Lcy09g010560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g010560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	extensin-like
Location	Chr09: 11313370 .. 11313956 (-)
RNA-Seq Expression	Lcy09g010560
Synteny	Lcy09g010560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCACATCTAAAGCCAAACTTGGAATTGGAAAGAGAACAATGGGGTATGTAATATTTGTGTCCTATGTTTTATCCCTTCTCATTGCATTTGTTTCTTTAGATCTGCCTTCAAAATTGACTGCACACTACATTCACCCATCTCCACCCACCAAGCCTCATGAATATCAACCTCCGCCACCGCGGTCTAGAAAACTGCCCTATCCATCTCCTCCTCCCTGCAACCAAGGCTCACCACCGCCAGCCAACAAGAAATACAAAATCAAGTCTCCGCCGCTGCCACCACCGCCACCTAAGAAGCCATGGCCAGGAGGGTTCACTCGTAAATCGCCTCCACCTCCTTTCTAACATCATCAATTAGGTAAATTAATTAGCTTTGTTCTTGTGTGGAAGATGTTATTATGAGGCATAGTTTTTATGGTTGGATTTGAATAAATTGTTATCATGAGGTAAGGAGGCTTCTTATTTACCTCTCTGGCTACCCGTGTATTTTTCTTTTATAATGTCAGAACTTTTGAATTTATTTTTCCATTTCGGTGAATCTAAAATGTAGATTTGTTCATCCTTGTATGAAACCATCTTAATTTGAA

mRNA sequence

GCCACATCTAAAGCCAAACTTGGAATTGGAAAGAGAACAATGGGGTATGTAATATTTGTGTCCTATGTTTTATCCCTTCTCATTGCATTTGTTTCTTTAGATCTGCCTTCAAAATTGACTGCACACTACATTCACCCATCTCCACCCACCAAGCCTCATGAATATCAACCTCCGCCACCGCGGTCTAGAAAACTGCCCTATCCATCTCCTCCTCCCTGCAACCAAGGCTCACCACCGCCAGCCAACAAGAAATACAAAATCAAGTCTCCGCCGCTGCCACCACCGCCACCTAAGAAGCCATGGCCAGGAGGGTTCACTCGTAAATCGCCTCCACCTCCTTTCTAACATCATCAATTAGGTAAATTAATTAGCTTTGTTCTTGTGTGGAAGATGTTATTATGAGGCATAGTTTTTATGGTTGGATTTGAATAAATTGTTATCATGAGGTAAGGAGGCTTCTTATTTACCTCTCTGGCTACCCGTGTATTTTTCTTTTATAATGTCAGAACTTTTGAATTTATTTTTCCATTTCGGTGAATCTAAAATGTAGATTTGTTCATCCTTGTATGAAACCATCTTAATTTGAA

Coding sequence (CDS)

ATGGGGTATGTAATATTTGTGTCCTATGTTTTATCCCTTCTCATTGCATTTGTTTCTTTAGATCTGCCTTCAAAATTGACTGCACACTACATTCACCCATCTCCACCCACCAAGCCTCATGAATATCAACCTCCGCCACCGCGGTCTAGAAAACTGCCCTATCCATCTCCTCCTCCCTGCAACCAAGGCTCACCACCGCCAGCCAACAAGAAATACAAAATCAAGTCTCCGCCGCTGCCACCACCGCCACCTAAGAAGCCATGGCCAGGAGGGTTCACTCGTAAATCGCCTCCACCTCCTTTCTAA

Protein sequence

MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPPRSRKLPYPSPPPCNQGSPPPANKKYKIKSPPLPPPPPKKPWPGGFTRKSPPPPF

Homology

[Close]

BLAST of Lcy09g010560 vs. ExPASy Swiss-Prot
Match: P06599 (Extensin OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.9e-05
Identity = 50/111 (45.05%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 8   SYVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPPRSRKLP---YPSPPPCNQGS 67
           S ++SLL+  VSL+L S+ TA Y + SPP  P E+ PPPP     P   Y SPPP  + S
Sbjct: 12  SLIVSLLVVLVSLNLASETTAKYTYSSPP--PPEHSPPPPEHSPPPPYHYESPPP-PKHS 71

Query: 68  PPPANKKYKIKSPPLP------------PPPPKKPWPGG---FTRKSPPPP 101
           PPP    YK KSPP P            PPPPK   P     +  KSPPPP
Sbjct: 72  PPPPTPVYKYKSPPPPMHSPPPPYHFESPPPPKHSPPPPTPVYKYKSPPPP 119

[Close]

BLAST of Lcy09g010560 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.4e-15
Identity = 62/103 (60.19%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 1   MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPPRSRKLP-YPSPPP 60
           MG+    SY+ SLLIAF  L+LPSKLTAHYIH S  T  +EY PPP     LP  P PP 
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPPP-----LPLLPPPPI 60

Query: 61  CNQGSPPPANKKYKIKS-PPLPPPPPKKPWPGGFTRKSPPPPF 102
           C QG+PPPA K+ K+K  P L PPPPK  WP  FT KSPPPPF
Sbjct: 61  CRQGAPPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lcy09g010560 vs. ExPASy TrEMBL
Match: A0A6J1JSJ5 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 59/103 (57.28%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MGYVIFVS-YVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPP-RSRKLPYPSPP 60
           MG +I  S Y+ SLLIA +SLDLPSKL A  +HPSP T PHEYQPPPP  S KLPYP P 
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPPPS 60

Query: 61  PCNQGSPPPANKKYKIKSPPLPPPPPKKPWPGGFTRKSPPPPF 102
            C Q +PPP   ++K K+    PP    PW   FT  SPPPPF
Sbjct: 61  VCTQLAPPPPKNRHKFKT---SPPHRMPPWQRKFTHTSPPPPF 100

[Close]

BLAST of Lcy09g010560 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.4e-13
Identity = 59/103 (57.28%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPPRSRKLPYPSPPP- 60
           MG+    SY+ SLLIAF  L+LP+KLTAHYIH S  T  + Y  PP     LP P PPP 
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPP-----LPLPPPPPI 60

Query: 61  CNQGSPPPANKKYKIKS-PPLPPPPPKKPWPGGFTRKSPPPPF 102
           C QG+PPPA K+ K+K  P L PPPP   WP  FT KSPPPPF
Sbjct: 61  CRQGAPPPAKKQNKLKQLPSLSPPPPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lcy09g010560 vs. ExPASy TrEMBL
Match: A0A5D3E2A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63236G00010 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.6e-12
Identity = 65/140 (46.43%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 1   MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQ---------------PP 60
           MG+VI  SY+  LL AF SL+LPSKLTAHYIHPS PTK  EY+               PP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  PPRSRKLPYPSP--------PPCNQGS--------PPPANKKYKIKSPPLP--------P 102
           PP+ +  P PSP        PP +           PPPA K+   KSPPLP         
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

[Close]

BLAST of Lcy09g010560 vs. ExPASy TrEMBL
Match: A0A6J1FFZ9 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 1   MGYVIFVS-YVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPP-----RSRKLPY 60
           MG +I  S Y+ SLLIA +SLDLPSKL A  +HPSP T PH+YQPPPP      S+KLPY
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PSPPPCNQGSPPPANKKYKIKSPPLPPPPPKKPWPGGFTRKSPPPPF 102
           P P  C Q +PPP   K + K     PP    PW   FT  SPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKF-KTSPPHRMPPWQRKFTHTSPPPPF 106

[Close]

BLAST of Lcy09g010560 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-13
Identity = 59/103 (57.28%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MGYVIFVS-YVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPP-RSRKLPYPSPP 60
           MG +I  S Y+ SLLIA +SLDLPSKL A  +HPSP T PHEYQPPPP  S KLPYP P 
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPPPS 60

Query: 61  PCNQGSPPPANKKYKIKSPPLPPPPPKKPWPGGFTRKSPPPPF 102
            C Q +PPP   ++K K+    PP    PW   FT  SPPPPF
Sbjct: 61  VCTQLAPPPPKNRHKFKT---SPPHRMPPWQRKFTHTSPPPPF 100

[Close]

BLAST of Lcy09g010560 vs. NCBI nr
Match: KAA0058957.1 (hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK10990.1 hypothetical protein E5676_scaffold874G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 4.9e-13
Identity = 59/103 (57.28%), Postives = 67/103 (65.05%), Query Frame = 0


Query: 1   MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPPRSRKLPYPSPPP- 60
           MG+    SY+ SLLIAF  L+LP+KLTAHYIH S  T  + Y  PP     LP P PPP 
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPP-----LPLPPPPPI 60

Query: 61  CNQGSPPPANKKYKIKS-PPLPPPPPKKPWPGGFTRKSPPPPF 102
           C QG+PPPA K+ K+K  P L PPPP   WP  FT KSPPPPF
Sbjct: 61  CRQGAPPPAKKQNKLKQLPSLSPPPPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lcy09g010560 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 61/108 (56.48%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 1   MGYVIFVS-YVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPP-----RSRKLPY 60
           MG +I  S Y+ SLLIA +SLDLPSKL A  +HPSP T PH+YQPPPP      S+KLPY
Sbjct: 1   MGSLILPSFYLFSLLIALLSLDLPSKLAAPSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PSPPPCNQGSPPPANK-KYKIKSPPLPPPPPKKPWPGGFTRKSPPPPF 102
           P P  C Q +PPP  K ++K K    P PP   PW   FT KSPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPKNRHKFK----PSPPHPMPWQRKFTHKSPPPPF 104

[Close]

BLAST of Lcy09g010560 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 65/140 (46.43%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 1   MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQ---------------PP 60
           MG+VI  SY+  LL AF SL+LPSKLTAHYIHPS PTK  EY+               PP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  PPRSRKLPYPSP--------PPCNQGS--------PPPANKKYKIKSPPLP--------P 102
           PP+ +  P PSP        PP +           PPPA K+   KSPPLP         
Sbjct: 61  PPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSR 120

[Close]

BLAST of Lcy09g010560 vs. NCBI nr
Match: XP_022939147.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 6.0e-11
Identity = 58/107 (54.21%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 1   MGYVIFVS-YVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPP-----RSRKLPY 60
           MG +I  S Y+ SLLIA +SLDLPSKL A  +HPSP T PH+YQPPPP      S+KLPY
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PSPPPCNQGSPPPANKKYKIKSPPLPPPPPKKPWPGGFTRKSPPPPF 102
           P P  C Q +PPP   K + K     PP    PW   FT  SPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKF-KTSPPHRMPPWQRKFTHTSPPPPF 106

[Close]

BLAST of Lcy09g010560 vs. TAIR 10
Match: AT1G21310.1 (extensin 3 )

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 43/105 (40.95%), Postives = 53/105 (50.48%), Query Frame = 0


Query: 8   SYVLSLLIAFVSLDLPSKLTAHYIHPSPPTKPHEYQPPPPRSRKLPYPSPPPCNQGSPPP 67
           S V +LL+  +SL   S+ TA+Y + SPP     Y PP      + + SPPP    SPPP
Sbjct: 7   SLVATLLVLTISLTFVSQSTANYFYSSPPPPVKHYTPP------VKHYSPPPVYH-SPPP 66

Query: 68  ANKKYKIKSPPLP------------PPPPKKPWPGGFTRKSPPPP 101
             K Y+ KSPP P            PPPPKK     +  KSPPPP
Sbjct: 67  PKKHYEYKSPPPPVKHYSPPPVYHSPPPPKK----HYVYKSPPPP 100

The following BLAST results are available for this feature:

BLAST of Lcy09g010560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P06599	3.9e-05	45.05	Extensin OS=Daucus carota OX=4039 PE=2 SV=1	[more]

BLAST of Lcy09g010560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI69	7.4e-15	60.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1	[more]
A0A6J1JSJ5	1.1e-13	57.28	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1	[more]
A0A5A7UW72	2.4e-13	57.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E2A1	7.6e-12	46.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FFZ9	2.9e-11	54.21	extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1	[more]

BLAST of Lcy09g010560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993352.1	2.2e-13	57.28	extensin-like [Cucurbita maxima]	[more]
KAA0058957.1	4.9e-13	57.28	hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK1099...	[more]
XP_023551507.1	8.3e-13	56.48	extensin-3-like [Cucurbita pepo subsp. pepo]	[more]
TYK29731.1	1.6e-11	46.43	hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]	[more]
XP_022939147.1	6.0e-11	54.21	extensin-like [Cucurbita moschata]	[more]

BLAST of Lcy09g010560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21310.1	2.0e-04	40.95	extensin 3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g010560.1	Lcy09g010560.1	mRNA