Lcy09g010520 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g010520
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	extensin-like
Location	Chr09: 11217346 .. 11218293 (-)
RNA-Seq Expression	Lcy09g010520
Synteny	Lcy09g010520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCATCGACGCCATTGGTAGATCGTCCTCTGCCATGAAGGAGGTTTGATTCAGCCATTGTAGGAGAGACAATCTCGTCTGTAATCGTGATTTTTTTTGGTCATCGGGAGCTTTCCCCTGCACGGATAATAGGACTTTTTTCCTTTTAGTCTCGTGATATTCCTCTTTGGATCTACCCGTATCTTAATGAGGGTAGTTGCGTTTAGTTGGCTTTATGAAGTTTATTTTCCAAAAAAAGGAAAAAAAACAATGTTGGTAAAAGATTTAAGCCAACGAGAACTCTTTTGTCGGTCGGAGCAATTAAATCATTTTCCAACTTGACCAACCATCACACTATCTGCCCGTAGAATTTATTCCACTCTATATATATCTCCTCGATAAACGACCATTAGTATTCACATCCTCTCTTAAGAATGGATTAAACTATTCTCAAGTTGCCTCTTTTTCTTTTGTTTCTTTTTTGAAAAGCTCAAGTTGCCTCATTGTTCATTAATCGACGATGTGTCCAATCAGAGTTTTTATTCTTGTTATTATTAATATTTTTTAATTTGTTGCATTTTTCATATATAATGTGGGTGTGAGAGGCCAGGTTTCAAAGCCACATCTAGGACTAAAACCAATCTTGAAATTTTGGAAAGAGAATAATGGAGTCGATGATATTTGTTTCTCCCTTCTCATTGCATTTGTCTCTTTAGATCTGCCTTCAAAATTAGCTGCATACTCCATCCACCCATCTCCATCCACCAACCCTCATGAATACAAGCCTCCGCCACCGCTGCCGTCTAGAAAACTCTCATATCCTCCTCGTCCGCTCTGCAGGCAAGACCCACCACCGCCAGCCATGAAGAAATACAAATTCAAGTCGCCGCCGCCGCCGCGACCACCACCGCCCAAGTTCCAATGGCCACGAAGGTTCAACCGTAAATCGCCTCCACCTCCTTTCTAG

mRNA sequence

ATGATCATCGACGCCATTGGTAGATCGTCCTCTGCCATGAAGGAGGTTTCAAAGCCACATCTAGGACTAAAACCAATCTTGAAATTTTGGAAAGAGAATAATGGAGTCGATGATATTTGTTTCTCCCTTCTCATTGCATTTGTCTCTTTAGATCTGCCTTCAAAATTAGCTGCATACTCCATCCACCCATCTCCATCCACCAACCCTCATGAATACAAGCCTCCGCCACCGCTGCCGTCTAGAAAACTCTCATATCCTCCTCGTCCGCTCTGCAGGCAAGACCCACCACCGCCAGCCATGAAGAAATACAAATTCAAGTCGCCGCCGCCGCCGCGACCACCACCGCCCAAGTTCCAATGGCCACGAAGGTTCAACCGTAAATCGCCTCCACCTCCTTTCTAG

Coding sequence (CDS)

ATGATCATCGACGCCATTGGTAGATCGTCCTCTGCCATGAAGGAGGTTTCAAAGCCACATCTAGGACTAAAACCAATCTTGAAATTTTGGAAAGAGAATAATGGAGTCGATGATATTTGTTTCTCCCTTCTCATTGCATTTGTCTCTTTAGATCTGCCTTCAAAATTAGCTGCATACTCCATCCACCCATCTCCATCCACCAACCCTCATGAATACAAGCCTCCGCCACCGCTGCCGTCTAGAAAACTCTCATATCCTCCTCGTCCGCTCTGCAGGCAAGACCCACCACCGCCAGCCATGAAGAAATACAAATTCAAGTCGCCGCCGCCGCCGCGACCACCACCGCCCAAGTTCCAATGGCCACGAAGGTTCAACCGTAAATCGCCTCCACCTCCTTTCTAG

Protein sequence

MIIDAIGRSSSAMKEVSKPHLGLKPILKFWKENNGVDDICFSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPPPPLPSRKLSYPPRPLCRQDPPPPAMKKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF

Homology

[Close]

BLAST of Lcy09g010520 vs. ExPASy TrEMBL
Match: A0A6J1JSJ5 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPPPPLPSRKLSYPPRPLCRQDPPPPAM 100
           FSLLIA +SLDLPSKLAA S+HPSP TNPHEY+PPPP PS KL YPP  +C Q  PPP  
Sbjct: 12  FSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPPPSVCTQLAPPPPK 71

Query: 101 KKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF 134
            ++KFK+ PP R PP    W R+F   SPPPPF
Sbjct: 72  NRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 100

[Close]

BLAST of Lcy09g010520 vs. ExPASy TrEMBL
Match: A0A6J1FFZ9 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPP----PPLPSRKLSYPPRPLCRQ--D 100
           FSLLIA +SLDLPSKLAA S+HPSP TNPH+Y+PP    PP PS+KL YPP  +C Q   
Sbjct: 12  FSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAP 71

Query: 101 PPPPAMKKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF 134
           PPPP   ++KFK+ PP R PP    W R+F   SPPPPF
Sbjct: 72  PPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 106

[Close]

BLAST of Lcy09g010520 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.4e-15
Identity = 59/93 (63.44%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPPPPLPSRKLSYPPRPLCRQDPPPPAM 100
           FSLLIAF  L+LPSKL A+ IH S STN +EY  PPPLP      PP P+CRQ  PPPA 
Sbjct: 11  FSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEY-GPPPLP----LLPPPPICRQGAPPPAK 70

Query: 101 KKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF 134
           K+ K K  P   PPPPKF+WPRRF  KSPPPPF
Sbjct: 71  KQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lcy09g010520 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-13
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPPP-PLPSRKLSYPPRPLCRQDPPPPA 100
           FSLLIAF  L+LP+KL A+ IH S STN + Y  PP PLP      PP P+CRQ  PPPA
Sbjct: 11  FSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLP------PPPPICRQGAPPPA 70

Query: 101 MKKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF 134
            K+ K K  P   PPPP F+WPRRF  KSPPPPF
Sbjct: 71  KKQNKLKQLPSLSPPPPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lcy09g010520 vs. ExPASy TrEMBL
Match: A0A5D3E2A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63236G00010 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 62/130 (47.69%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPPP-PLPSRKLSY--PPRPLCRQDPPP 100
           F LL AF SL+LPSKL A+ IHPS  T   EYKPPP PLP    SY  PP P  +  PPP
Sbjct: 11  FFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPPPPKYKFQPPP 70

Query: 101 --------------PAMKKYKFKSPPPPRP--------------------PPPKFQWPRR 134
                         PA K+YKFK PPPP                      PPPK+ WPR+
Sbjct: 71  SPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSRPPPKYSWPRK 130

[Close]

BLAST of Lcy09g010520 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-19
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPPPPLPSRKLSYPPRPLCRQDPPPPAM 100
           FSLLIA +SLDLPSKLAA S+HPSP TNPHEY+PPPP PS KL YPP  +C Q  PPP  
Sbjct: 12  FSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPPPSVCTQLAPPPPK 71

Query: 101 KKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF 134
            ++KFK+ PP R PP    W R+F   SPPPPF
Sbjct: 72  NRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 100

[Close]

BLAST of Lcy09g010520 vs. NCBI nr
Match: XP_022939147.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-17
Identity = 60/99 (60.61%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPP----PPLPSRKLSYPPRPLCRQ--D 100
           FSLLIA +SLDLPSKLAA S+HPSP TNPH+Y+PP    PP PS+KL YPP  +C Q   
Sbjct: 12  FSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAP 71

Query: 101 PPPPAMKKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF 134
           PPPP   ++KFK+ PP R PP    W R+F   SPPPPF
Sbjct: 72  PPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 106

[Close]

BLAST of Lcy09g010520 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.8 bits (242), Expect = 7.4e-17
Identity = 61/98 (62.24%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPP----PPLPSRKLSYPPRPLCRQ-DP 100
           FSLLIA +SLDLPSKLAA S+HPSP TNPH+Y+PP    PP PS+KL YPP  +C Q  P
Sbjct: 12  FSLLIALLSLDLPSKLAAPSLHPSPCTNPHQYQPPPPPLPPFPSKKLPYPPPSVCTQLAP 71

Query: 101 PPPAMKKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF 134
           PPP   ++KFK P PP P P    W R+F  KSPPPPF
Sbjct: 72  PPPPKNRHKFK-PSPPHPMP----WQRKFTHKSPPPPF 104

[Close]

BLAST of Lcy09g010520 vs. NCBI nr
Match: KAA0058957.1 (hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK10990.1 hypothetical protein E5676_scaffold874G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 6.4e-13
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPPP-PLPSRKLSYPPRPLCRQDPPPPA 100
           FSLLIAF  L+LP+KL A+ IH S STN + Y  PP PLP      PP P+CRQ  PPPA
Sbjct: 11  FSLLIAFFFLNLPTKLTAHYIHKSSSTNLYGYGAPPLPLP------PPPPICRQGAPPPA 70

Query: 101 MKKYKFKSPPPPRPPPPKFQWPRRFNRKSPPPPF 134
            K+ K K  P   PPPP F+WPRRF  KSPPPPF
Sbjct: 71  KKQNKLKQLPSLSPPPPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of Lcy09g010520 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-12
Identity = 62/130 (47.69%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 41  FSLLIAFVSLDLPSKLAAYSIHPSPSTNPHEYKPPP-PLPSRKLSY--PPRPLCRQDPPP 100
           F LL AF SL+LPSKL A+ IHPS  T   EYKPPP PLP    SY  PP P  +  PPP
Sbjct: 11  FFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPPPPKYKFQPPP 70

Query: 101 --------------PAMKKYKFKSPPPPRP--------------------PPPKFQWPRR 134
                         PA K+YKFK PPPP                      PPPK+ WPR+
Sbjct: 71  SPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPSRPPPKYSWPRK 130

The following BLAST results are available for this feature:

BLAST of Lcy09g010520 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g010520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JSJ5	1.0e-19	64.52	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1	[more]
A0A6J1FFZ9	1.2e-17	60.61	extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1	[more]
A0A0A0KI69	4.4e-15	63.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1	[more]
A0A5A7UW72	3.1e-13	59.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E2A1	1.5e-12	47.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy09g010520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993352.1	2.1e-19	64.52	extensin-like [Cucurbita maxima]	[more]
XP_022939147.1	2.5e-17	60.61	extensin-like [Cucurbita moschata]	[more]
XP_023551507.1	7.4e-17	62.24	extensin-3-like [Cucurbita pepo subsp. pepo]	[more]
KAA0058957.1	6.4e-13	59.57	hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK1099...	[more]
TYK29731.1	3.2e-12	47.69	hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy09g010520 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g010520.1	Lcy09g010520.1	mRNA