Lcy09g010340 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g010340
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr09: 10932803 .. 10933351 (-)
RNA-Seq ExpressionLcy09g010340
SyntenyLcy09g010340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTAAGTCTTATTCTTACCATTCCCCTTCGACATGTGTTCTCTAAGGATAGTATCATTTGGCATTATGAGAAATGTGGTGTCTATTCTGTTAAGAGTAGGTACCAGTTAGGTCAAATGGGTTTGCTTGCCCAATCCCCTACATCTTCTTCGAATGAGTCGGTATCTAGTTGGTAGAAGAGTTGTTGGAAGATGGGGATCCCAAATAAAGTAAAGATTTTTTTGTGGAGACTTTGTTTTGATCGTCTTCCTACTGTTGATAATTTGAGTATTAGAGGCATTGATGTATTGATTGTGTGTTCATTGTGGTAGGCATGGGGAGTCAAGTATGCATCTATTTTGGCAGTGCAAATTTTTGTATAAAGTCTTGATGGGTTCTAAATGGACAGTTTTGTTGCGTAATGTTCAGGCAGGTTCTATGCTTAATATCCTTAGAGATATTAAAGATATGGTGGATTGGGCAAAGTTTGAGGAATTTGTGGTCCTGTTGTGGGCGGTGTGGAATTGTCAGAACAAAGGAAATTCATGGGAGTTGTTCCTTCGGTAG

mRNA sequence

ATGAAGCATGGGGAGTCAAGTATGCATCTATTTTGGCAGTGCAAATTTTTGTATAAAGTCTTGATGGGTTCTAAATGGACAGTTTTGTTGCGTAATGTTCAGGCAGGTTCTATGCTTAATATCCTTAGAGATATTAAAGATATGGTGGATTGGGCAAAGTTTGAGGAATTTGTGGTCCTGTTGTGGGCGGTGTGGAATTGTCAGAACAAAGGAAATTCATGGGAGTTGTTCCTTCGGTAG

Coding sequence (CDS)

ATGAAGCATGGGGAGTCAAGTATGCATCTATTTTGGCAGTGCAAATTTTTGTATAAAGTCTTGATGGGTTCTAAATGGACAGTTTTGTTGCGTAATGTTCAGGCAGGTTCTATGCTTAATATCCTTAGAGATATTAAAGATATGGTGGATTGGGCAAAGTTTGAGGAATTTGTGGTCCTGTTGTGGGCGGTGTGGAATTGTCAGAACAAAGGAAATTCATGGGAGTTGTTCCTTCGGTAG

Protein sequence

MKHGESSMHLFWQCKFLYKVLMGSKWTVLLRNVQAGSMLNILRDIKDMVDWAKFEEFVVLLWAVWNCQNKGNSWELFLR
Homology
[Close]
BLAST of Lcy09g010340 vs. ExPASy TrEMBL
Match: A0A6J1CNZ5 (uncharacterized protein LOC111013220 OS=Momordica charantia OX=3673 GN=LOC111013220 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-07
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 2   KHGESSMHLFWQCKFLYKVLMGSKWTVLLRNVQAGSMLNILRDIKDMVDWAKFEEFVVLL 61
           K GE ++HLFW CK        SK++ L ++V+  S+L++LRD + ++ W+ FEE VV L
Sbjct: 110 KKGEDALHLFWTCKVSKNQRQVSKFSHLPQDVRPLSLLHLLRDCEGILSWSDFEELVVFL 169

Query: 62  WAVWNCQN 70
           W +W+ +N
Sbjct: 170 WGIWSKRN 177

[Close]
BLAST of Lcy09g010340 vs. ExPASy TrEMBL
Match: A0A498JLW7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_009044 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.5e-04
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 0 

Query: 3   HGESSMHLFWQCKFLYKVLMGSKWTVLLRNVQAGSMLNILRDIKDMVDWAKFEEFVVLLW 62
           +GES++HL  +C +     M S+   LLRN    S +  + +I D++  A FE F+V+ W
Sbjct: 61  YGESTIHLMKECHYAKCAWMSSQVGPLLRNTHPSSYMIWINEIADLIPKASFEVFLVVCW 120

Query: 63  AVWNCQNK 71
           A+W   NK
Sbjct: 121 ALWGAGNK 128

[Close]
BLAST of Lcy09g010340 vs. NCBI nr
Match: XP_022143319.1 (uncharacterized protein LOC111013220 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-07
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 2   KHGESSMHLFWQCKFLYKVLMGSKWTVLLRNVQAGSMLNILRDIKDMVDWAKFEEFVVLL 61
           K GE ++HLFW CK        SK++ L ++V+  S+L++LRD + ++ W+ FEE VV L
Sbjct: 110 KKGEDALHLFWTCKVSKNQRQVSKFSHLPQDVRPLSLLHLLRDCEGILSWSDFEELVVFL 169

Query: 62  WAVWNCQN 70
           W +W+ +N
Sbjct: 170 WGIWSKRN 177

[Close]
BLAST of Lcy09g010340 vs. NCBI nr
Match: RXH96540.1 (hypothetical protein DVH24_009044 [Malus domestica])

HSP 1 Score: 53.9 bits (128), Expect = 7.2e-04
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 0 

Query: 3   HGESSMHLFWQCKFLYKVLMGSKWTVLLRNVQAGSMLNILRDIKDMVDWAKFEEFVVLLW 62
           +GES++HL  +C +     M S+   LLRN    S +  + +I D++  A FE F+V+ W
Sbjct: 61  YGESTIHLMKECHYAKCAWMSSQVGPLLRNTHPSSYMIWINEIADLIPKASFEVFLVVCW 120

Query: 63  AVWNCQNK 71
           A+W   NK
Sbjct: 121 ALWGAGNK 128

The following BLAST results are available for this feature:
BLAST of Lcy09g010340 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g010340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNZ51.5e-0741.18uncharacterized protein LOC111013220 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A498JLW73.5e-0436.76Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_009044 PE=4 SV=1[more]
BLAST of Lcy09g010340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143319.13.1e-0741.18uncharacterized protein LOC111013220 [Momordica charantia][more]
RXH96540.17.2e-0436.76hypothetical protein DVH24_009044 [Malus domestica][more]
BLAST of Lcy09g010340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g010340.1Lcy09g010340.1mRNA