Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTCTTTAAGTCTAAAGATTCTGTAGAAGAAGAGGAAGAAGAGGAAAAAACATTACAAGCTTTTGAGGAGAAAATTGATGGAGATGATGAGACCGAGAAAGCCAATAAGTTAAATGTTGAGTACTATGAGCCCAAACCTAGAGATGTTGTGGTTGATGTGGTTGTCCCAGGTATCGAAAACAAGCTCGATATCAACGTGGGAGCGGATTTATTGGGAACAATGTTGACTAAAGAAGTGCTTCCCTTGTATGACAAAGAGATGGAGTTTTTGATGTGTGATCTTGACAATGATGCTGAGTCTTTTATGGTGAATGGAAAGATGGGGTTGGTGATATATGATGGTGCTGTTAGCCGTGGACCGGGGCCAGTGCGCCCTGTTGTGGAGACTGGCACAGAGTTTTGTTTGCTGTGGTTCTGGGAAGGACACTCAGTGGTTGTCCATTGCTCTCGACAAGAAGGTACTTTCGACGGTTAGCCTGGCATCGAATGAGGCAGGTTCTTTTCTTGATTAGCTTCTCTGTTTATTGAAGTTTCTGTTTTAGGGGGCAGAAAGAAGAAATGTATATATTTGTTGTGGTTTCCTTGGTCGACAGATAAAACGACTCTTTAAGCCAATTGAAGTTAAAATATCGGAGTGGAATACTGGAGGCCTTCTTACACTTGAGGTTGTCTATGCGATAGTGACTCATTTGGTCTTTAGCTTATACATTTGTTTGGGTGGCTTATATTTCATTTTGGTTTTGAACTTTTGTTGTGCAGAGTTTGCGAGCATTTCTTCCAAAGGCTGAGTTATTGAATCGAGTACATAACTTCACAGAGTCAAAAGAAAATGTGAGTAGGATCCAGTTTCTTCTATTTTTGAGCTGCCATCTGCGTTACCTCACCCTTCATTTAAATGGCATCTCCATCTTCCATCGAAAATGATCGTTGCCTCGAGACTGCAGATTTACTATGTTCTACAAACATTGTTGTGTTTCTTTATTTACTGACTAGAATAGTACCAAGGATAATATGAAATTACGTATAGAGATGTTCAAGGAACACCATTTAGATATTATTTACTATAACATAGCAAGAAATTATTTCTGCTTTGGGGCCTGCCATATTCTGTTGTTCTTATTAATCTTTAGTTTCTGAAGTTATTGACGCATCCGCTCGAATGTTCCTCAGTGGGTTACTCCATGTTTCGAACATCACCCGTGCTCGAGTTACCTCGGTGAGCGACTTTACTTGCAGTGGGTGAAATGGTCCAAGTTTTAGTTGTGAAGTCAATGTTTCCTGACAAGACATCTCTAAGGTAATTCAAGAGTATATTACTCAATTTAACAGTCATGGTTGGTACCTCTTATAACTAATCATTTTGCTTTTGTGGCTTTACAGTATTGCAGACCTCGAAAGTGAGCCCGGCCTCTTTATATCGAACAAAGAGGTAATACTCATAATGATCTTCCTCACCATTGAACTTCATTTTATTCGAAATTTGACTCGGTCGTTTTTTCTTTTCCTTTATTAGAAAGTATTTTCAGAGGCCAAGATCATGGCGAAGAAGTTCAGGCAAAAGCTACCTGCGGTCGAAGGCATTCCCTGGCCAGAACCTGCTCCAACTATTGATCTTCTGTTTGAAAATGAATCGAACATGTATGCAAATTGGAAGTGGTTCAAATTCGAAAGGTAG
mRNA sequence
ATGAAGTTCTTTAAGTCTAAAGATTCTGTAGAAGAAGAGGAAGAAGAGGAAAAAACATTACAAGCTTTTGAGGAGAAAATTGATGGAGATGATGAGACCGAGAAAGCCAATAAGTTAAATGTTGAGTACTATGAGCCCAAACCTAGAGATGTTGTGGTTGATGTGGTTGTCCCAGGTATCGAAAACAAGCTCGATATCAACGTGGGAGCGGATTTATTGGGAACAATGTTGACTAAAGAAGTGCTTCCCTTGTATGACAAAGAGATGGAGTTTTTGATGTGTGATCTTGACAATGATGCTGAGTCTTTTATGGTGAATGGAAAGATGGGGTTGGTGATATATGATGGTGCTGTTAGCCGTGGACCGGGGCCAGTGCGCCCTGTTGTGGAGACTGGCACAGAGTTTTGTTTGCTGTGGTTCTGGGAAGGACACTCAGTGGTTGTCCATTGCTCTCGACAAGAAGTGGGTGAAATGGTCCAAGTTTTAGTTGTGAAGTCAATGTTTCCTGACAAGACATCTCTAAGTATTGCAGACCTCGAAAGTGAGCCCGGCCTCTTTATATCGAACAAAGAGAAAGTATTTTCAGAGGCCAAGATCATGGCGAAGAAGTTCAGGCAAAAGCTACCTGCGGTCGAAGGCATTCCCTGGCCAGAACCTGCTCCAACTATTGATCTTCTGTTTGAAAATGAATCGAACATGTATGCAAATTGGAAGTGGTTCAAATTCGAAAGGTAG
Coding sequence (CDS)
ATGAAGTTCTTTAAGTCTAAAGATTCTGTAGAAGAAGAGGAAGAAGAGGAAAAAACATTACAAGCTTTTGAGGAGAAAATTGATGGAGATGATGAGACCGAGAAAGCCAATAAGTTAAATGTTGAGTACTATGAGCCCAAACCTAGAGATGTTGTGGTTGATGTGGTTGTCCCAGGTATCGAAAACAAGCTCGATATCAACGTGGGAGCGGATTTATTGGGAACAATGTTGACTAAAGAAGTGCTTCCCTTGTATGACAAAGAGATGGAGTTTTTGATGTGTGATCTTGACAATGATGCTGAGTCTTTTATGGTGAATGGAAAGATGGGGTTGGTGATATATGATGGTGCTGTTAGCCGTGGACCGGGGCCAGTGCGCCCTGTTGTGGAGACTGGCACAGAGTTTTGTTTGCTGTGGTTCTGGGAAGGACACTCAGTGGTTGTCCATTGCTCTCGACAAGAAGTGGGTGAAATGGTCCAAGTTTTAGTTGTGAAGTCAATGTTTCCTGACAAGACATCTCTAAGTATTGCAGACCTCGAAAGTGAGCCCGGCCTCTTTATATCGAACAAAGAGAAAGTATTTTCAGAGGCCAAGATCATGGCGAAGAAGTTCAGGCAAAAGCTACCTGCGGTCGAAGGCATTCCCTGGCCAGAACCTGCTCCAACTATTGATCTTCTGTTTGAAAATGAATCGAACATGTATGCAAATTGGAAGTGGTTCAAATTCGAAAGGTAG
Protein sequence
MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSRGPGPVRPVVETGTEFCLLWFWEGHSVVVHCSRQEVGEMVQVLVVKSMFPDKTSLSIADLESEPGLFISNKEKVFSEAKIMAKKFRQKLPAVEGIPWPEPAPTIDLLFENESNMYANWKWFKFER
Homology
BLAST of Lcy09g010010 vs. ExPASy Swiss-Prot
Match:
Q9M9H4 (Protein PIGMENT DEFECTIVE 338, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE338 PE=1 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 4.1e-40
Identity = 130/393 (33.08%), Postives = 178/393 (45.29%), Query Frame = 0
Query: 5 KSKDSVEEEEEEEKTLQAF------EEKIDG--DDETEKANKLNVEYYEPKPRDVVVDVV 64
KS++ + +++ L+ F EE+ +G + +++ ++++VEYY+PKP D VV VV
Sbjct: 106 KSENEESGKADDDAILEPFLKFFKPEEEGEGIESEVSDETDRVSVEYYDPKPGDFVVGVV 165
Query: 65 VPGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDG 124
V G ENKLD+N+GAD+LGTMLTKE+LPLYDKE+++L+CDL DAE F+VNGKMG+V D
Sbjct: 166 VSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDLKYDAEEFLVNGKMGIVKDDD 225
Query: 125 ---AVSRGPGPVRPVVETGTEFC----------------------LLWF----------- 184
++ RPVVE GT + W
Sbjct: 226 EGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSRRYFRRIAWHRVRQIKQLNEP 285
Query: 185 ------------------------------------------------------------ 244
Sbjct: 286 IEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELKENVGRRFLVQITRLNEDKND 345
BLAST of Lcy09g010010 vs. ExPASy TrEMBL
Match:
A0A6J1JY23 (uncharacterized protein LOC111489862 OS=Cucurbita maxima OX=3661 GN=LOC111489862 PE=4 SV=1)
HSP 1 Score: 315.8 bits (808), Expect = 1.5e-82
Identity = 199/386 (51.55%), Postives = 212/386 (54.92%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+ DSVEEEEEEEK ++AFEEKIDGD+E KANKLNVEYYEPKP DVVV VVV G
Sbjct: 140 MKFFKNTDSVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPGDVVVGVVVSGN 199
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKE+EFLMCDLD DAESFM+NGKMGLV YD AVSR
Sbjct: 200 ENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKMGLVKYDDAVSR 259
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
GPGP RPVVETGT L W
Sbjct: 260 GPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKRLDEPIEVKISE 319
Query: 181 ------------------------------------------------------------ 240
Sbjct: 320 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDEAKNDLILSERQ 379
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 380 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLAVGEK 439
BLAST of Lcy09g010010 vs. ExPASy TrEMBL
Match:
A0A6J1FMS2 (uncharacterized protein LOC111445605 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445605 PE=4 SV=1)
HSP 1 Score: 312.8 bits (800), Expect = 1.3e-81
Identity = 198/386 (51.30%), Postives = 211/386 (54.66%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E KANKLNVEYYEPKP DVVV VVV G
Sbjct: 140 MKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPGDVVVGVVVSGN 199
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKE+EFLMCDLD DAESFM+NGKMGLV YD AVSR
Sbjct: 200 ENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKMGLVKYDDAVSR 259
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
G GP RPVVETGT L W
Sbjct: 260 GLGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKRLDEPIEVKISE 319
Query: 181 ------------------------------------------------------------ 240
Sbjct: 320 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDEAKNDLILSERQ 379
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 380 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLAVGEK 439
BLAST of Lcy09g010010 vs. ExPASy TrEMBL
Match:
A0A5A7TVE5 (30S ribosomal protein S1-like protein A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001510 PE=4 SV=1)
HSP 1 Score: 307.0 bits (785), Expect = 7.1e-80
Identity = 194/386 (50.26%), Postives = 211/386 (54.66%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+KDS +E+EEE+K L+AFEEKIDGDDETE ANKLNVEYYEPKP DVVV VVV G
Sbjct: 167 MKFFKNKDSADEKEEEDKALRAFEEKIDGDDETEIANKLNVEYYEPKPGDVVVGVVVSGN 226
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLD DAESFM+NGKMGLV Y+ A SR
Sbjct: 227 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDKDAESFMMNGKMGLVKYEDAFSR 286
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
G GP RPVVE GT L W
Sbjct: 287 GQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKGLDEPIEVKISE 346
Query: 181 ------------------------------------------------------------ 240
Sbjct: 347 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQITRIDEAKNDLILSEKQ 406
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 407 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLTVGEK 466
BLAST of Lcy09g010010 vs. ExPASy TrEMBL
Match:
A0A5D3BZ92 (30S ribosomal protein S1-like protein A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00960 PE=4 SV=1)
HSP 1 Score: 307.0 bits (785), Expect = 7.1e-80
Identity = 194/386 (50.26%), Postives = 211/386 (54.66%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+KDS +E+EEE+K L+AFEEKIDGDDETE ANKLNVEYYEPKP DVVV VVV G
Sbjct: 129 MKFFKNKDSADEKEEEDKALRAFEEKIDGDDETEIANKLNVEYYEPKPGDVVVGVVVSGN 188
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLD DAESFM+NGKMGLV Y+ A SR
Sbjct: 189 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDKDAESFMMNGKMGLVKYEDAFSR 248
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
G GP RPVVE GT L W
Sbjct: 249 GQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKGLDEPIEVKISE 308
Query: 181 ------------------------------------------------------------ 240
Sbjct: 309 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQITRIDEAKNDLILSEKQ 368
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 369 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLTVGEK 428
BLAST of Lcy09g010010 vs. ExPASy TrEMBL
Match:
A0A1S4E163 (30S ribosomal protein S1 homolog A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496585 PE=4 SV=1)
HSP 1 Score: 307.0 bits (785), Expect = 7.1e-80
Identity = 194/386 (50.26%), Postives = 211/386 (54.66%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+KDS +E+EEE+K L+AFEEKIDGDDETE ANKLNVEYYEPKP DVVV VVV G
Sbjct: 129 MKFFKNKDSADEKEEEDKALRAFEEKIDGDDETEIANKLNVEYYEPKPGDVVVGVVVSGN 188
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLD DAESFM+NGKMGLV Y+ A SR
Sbjct: 189 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDKDAESFMMNGKMGLVKYEDAFSR 248
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
G GP RPVVE GT L W
Sbjct: 249 GQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKGLDEPIEVKISE 308
Query: 181 ------------------------------------------------------------ 240
Sbjct: 309 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQITRIDEAKNDLILSEKQ 368
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 369 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLTVGEK 428
BLAST of Lcy09g010010 vs. NCBI nr
Match:
XP_038886053.1 (protein PIGMENT DEFECTIVE 338, chloroplastic [Benincasa hispida])
HSP 1 Score: 317.4 bits (812), Expect = 1.1e-82
Identity = 198/386 (51.30%), Postives = 213/386 (55.18%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+KDS +EEEEEEK L+AFEEKIDGDDETEK NKLNVEYYEPKP DVVV VVV G
Sbjct: 145 MKFFKTKDSADEEEEEEKALRAFEEKIDGDDETEKGNKLNVEYYEPKPGDVVVGVVVSGN 204
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLD DAESFM+NGKMGLV Y+ A SR
Sbjct: 205 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDKDAESFMMNGKMGLVKYEDAFSR 264
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
GPGP RPVVETGT L W
Sbjct: 265 GPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKRLDEPIEVKISE 324
Query: 181 ------------------------------------------------------------ 240
Sbjct: 325 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQITRIDEAKNDLILSERQ 384
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 385 AWESLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLAVGEK 444
BLAST of Lcy09g010010 vs. NCBI nr
Match:
KAG6578864.1 (Protein PIGMENT DEFECTIVE 338, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 316.6 bits (810), Expect = 1.8e-82
Identity = 196/375 (52.27%), Postives = 211/375 (56.27%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E KANKLNVEYYEPKP D+VV VVV G
Sbjct: 140 MKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPGDIVVGVVVSGN 199
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPL+DKE+EFLMCDLD DAESFM+NGKMGLV YD A SR
Sbjct: 200 ENKLDINVGADLLGTMLTKEVLPLHDKEVEFLMCDLDKDAESFMMNGKMGLVKYDDAFSR 259
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
GPGP RPVVETGT L W
Sbjct: 260 GPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKRLDEPIEVKISE 319
Query: 181 --------------------------------------------------WE-------- 240
WE
Sbjct: 320 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVNEAKNDLILSERQAWETLYLREGT 379
Query: 241 ---------------------GHSVVVHCSR------------QEVGEMVQVLVVKSMFP 245
S ++H S VGE V+VLVVKSMFP
Sbjct: 380 LLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLAVGEKVKVLVVKSMFP 439
BLAST of Lcy09g010010 vs. NCBI nr
Match:
XP_022994056.1 (uncharacterized protein LOC111489862 [Cucurbita maxima])
HSP 1 Score: 315.8 bits (808), Expect = 3.2e-82
Identity = 199/386 (51.55%), Postives = 212/386 (54.92%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+ DSVEEEEEEEK ++AFEEKIDGD+E KANKLNVEYYEPKP DVVV VVV G
Sbjct: 140 MKFFKNTDSVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPGDVVVGVVVSGN 199
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKE+EFLMCDLD DAESFM+NGKMGLV YD AVSR
Sbjct: 200 ENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKMGLVKYDDAVSR 259
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
GPGP RPVVETGT L W
Sbjct: 260 GPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKRLDEPIEVKISE 319
Query: 181 ------------------------------------------------------------ 240
Sbjct: 320 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDEAKNDLILSERQ 379
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 380 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLAVGEK 439
BLAST of Lcy09g010010 vs. NCBI nr
Match:
XP_023551503.1 (uncharacterized protein LOC111809291 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 315.8 bits (808), Expect = 3.2e-82
Identity = 199/386 (51.55%), Postives = 212/386 (54.92%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFK+ D+VEEEEEEEK ++AFEEKIDGD+E KA KLNVEYYEPKP DVVV VVV G
Sbjct: 140 MKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKATKLNVEYYEPKPGDVVVGVVVSGN 199
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKE+EFLMCDLD DAESFM+NGKMGLV YD AVSR
Sbjct: 200 ENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKMGLVKYDDAVSR 259
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
GPGP RPVVETGT L W
Sbjct: 260 GPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKRLDEPIEVKISE 319
Query: 181 ------------------------------------------------------------ 240
Sbjct: 320 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDEAKNDLILSERQ 379
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 380 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLAVGEK 439
BLAST of Lcy09g010010 vs. NCBI nr
Match:
KAG7016396.1 (30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 315.5 bits (807), Expect = 4.1e-82
Identity = 198/386 (51.30%), Postives = 211/386 (54.66%), Query Frame = 0
Query: 1 MKFFKSKDSVEEEEEEEKTLQAFEEKIDGDDETEKANKLNVEYYEPKPRDVVVDVVVPGI 60
MKFFKS D+VEEEEEEEK ++AFEEKIDGD+E KANKLNVEYYEPKP D+VV VVV G
Sbjct: 140 MKFFKSTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVEYYEPKPGDIVVGVVVSGN 199
Query: 61 ENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDGAVSR 120
ENKLDINVGADLLGTMLTKEVLPLYDKE+EFLMCDLD DAESFM+NGKMGLV YD A SR
Sbjct: 200 ENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAESFMMNGKMGLVKYDDAFSR 259
Query: 121 GPGPVRPVVETGTEFC----------------------LLWF------------------ 180
GPGP RPVVETGT L W
Sbjct: 260 GPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKRLDEPIEVKISE 319
Query: 181 ------------------------------------------------------------ 240
Sbjct: 320 WNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFVQIMRIDEAKNDLILSERQ 379
Query: 241 -WE-----------------------------GHSVVVHCSR------------QEVGEM 245
WE S ++H S VGE
Sbjct: 380 AWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSNITRARVTSVSDLLAVGEK 439
BLAST of Lcy09g010010 vs. TAIR 10
Match:
AT1G71720.1 (Nucleic acid-binding proteins superfamily )
HSP 1 Score: 166.4 bits (420), Expect = 2.9e-41
Identity = 130/393 (33.08%), Postives = 178/393 (45.29%), Query Frame = 0
Query: 5 KSKDSVEEEEEEEKTLQAF------EEKIDG--DDETEKANKLNVEYYEPKPRDVVVDVV 64
KS++ + +++ L+ F EE+ +G + +++ ++++VEYY+PKP D VV VV
Sbjct: 106 KSENEESGKADDDAILEPFLKFFKPEEEGEGIESEVSDETDRVSVEYYDPKPGDFVVGVV 165
Query: 65 VPGIENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDLDNDAESFMVNGKMGLVIYDG 124
V G ENKLD+N+GAD+LGTMLTKE+LPLYDKE+++L+CDL DAE F+VNGKMG+V D
Sbjct: 166 VSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDLKYDAEEFLVNGKMGIVKDDD 225
Query: 125 ---AVSRGPGPVRPVVETGTEFC----------------------LLWF----------- 184
++ RPVVE GT + W
Sbjct: 226 EGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSRRYFRRIAWHRVRQIKQLNEP 285
Query: 185 ------------------------------------------------------------ 244
Sbjct: 286 IEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELKENVGRRFLVQITRLNEDKND 345
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9M9H4 | 4.1e-40 | 33.08 | Protein PIGMENT DEFECTIVE 338, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1JY23 | 1.5e-82 | 51.55 | uncharacterized protein LOC111489862 OS=Cucurbita maxima OX=3661 GN=LOC111489862... | [more] |
A0A6J1FMS2 | 1.3e-81 | 51.30 | uncharacterized protein LOC111445605 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A5A7TVE5 | 7.1e-80 | 50.26 | 30S ribosomal protein S1-like protein A isoform X2 OS=Cucumis melo var. makuwa O... | [more] |
A0A5D3BZ92 | 7.1e-80 | 50.26 | 30S ribosomal protein S1-like protein A isoform X2 OS=Cucumis melo var. makuwa O... | [more] |
A0A1S4E163 | 7.1e-80 | 50.26 | 30S ribosomal protein S1 homolog A isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034... | [more] |
Match Name | E-value | Identity | Description | |
XP_038886053.1 | 1.1e-82 | 51.30 | protein PIGMENT DEFECTIVE 338, chloroplastic [Benincasa hispida] | [more] |
KAG6578864.1 | 1.8e-82 | 52.27 | Protein PIGMENT DEFECTIVE 338, chloroplastic, partial [Cucurbita argyrosperma su... | [more] |
XP_022994056.1 | 3.2e-82 | 51.55 | uncharacterized protein LOC111489862 [Cucurbita maxima] | [more] |
XP_023551503.1 | 3.2e-82 | 51.55 | uncharacterized protein LOC111809291 [Cucurbita pepo subsp. pepo] | [more] |
KAG7016396.1 | 4.1e-82 | 51.30 | 30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrospe... | [more] |
Match Name | E-value | Identity | Description | |
AT1G71720.1 | 2.9e-41 | 33.08 | Nucleic acid-binding proteins superfamily | [more] |