Lcy09g008880 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g008880
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr09: 8544946 .. 8559838 (+)
RNA-Seq Expression	Lcy09g008880
Synteny	Lcy09g008880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCACAAGCAGGGGGAAAAAGAAATTCAGACTCAGATCCACGGCGGAGCCTTCAACTCCGGCCCCGATTCCGTCCTAAATGTCGAAGGATAAGGGAGGTATCTTCACGAGAACGGAAGGACGTTTCATTCAGTGAATGGCGGAGGAGGAAGTTAGGGTTTACTTATAATTCCATTACGCAGCAGGGGATCTTCACGCCAAAAGAGCCTGGTAAGGTTGATACGTACGTCTATGGCATCACGACCCACGATTTCAGCCATTTCCTCGCCGCCGTCAACTTCGACGTCCTCTACAGGTATGCAGGTTTACCGATTTCTACATTTCGTATCTCTATAATATACAATTGATTGCATATACGATCAATTTTTTGATAATGAGGTTGTAGATAGCGCCGGGATATCAAGATTCTGGGAGTTATATATTATTACACCGTATTGCAACTGTTTGGTTATTATTTCTGTCTTATTTAGCTTAAGTATCAGAGAAGCAGTGGAACATCTGTTCCTGGAAACTCGGTTCTTCGTTGTTCTGTAAAATTTAATTTGTCTGTGATACTGGAAGTATTGGAGATACTCCATGCTAGTCCAATGTGGGAGGGATTAAAAAGGGAAGCTAGTGTGAATCTGAATATTATGGATATGGGTACGCCTTAGCATTTTTTTAAGTGGTGATTTGACTTGTACGAATGAATTAGGTGCCACACGAAAATGTCAACGATGCTTGATTGATAAATGGAAGATTTTGGAGTGGGAATATGAAAGTGAAATGCTAACTGTGAGGCTATAAGCTTTAGTTAATATTAAGGAGGTCTATTTTTGCTAAATGCACACTTTCTTTGAAGTTGTAAGGCTCAGTACTCTATAGTAAACTTCCTGGATGAGTAATTCTTTACCTCTTTATAATTATATCTATATTTCTTAAAAAGGGTGAACAATTTTCTAGTTGAGCTCATGAGATAATGTGAACATCTTTGGAGATATTTTATTACTCAGACATTGATCTATGGGCATGAGATATTTAATATTTTAGTGTATGGAATAACTTTGCAAAAGTGAATCTTTTCAACTTTTTTAGTTTGAATATTTATAACAAATTTAAAAAAAAAACCAAAGGTTTTCAAATTTTAGCATCTTCTGACTGGTCTAGAAGTTGGAGCATGACTTATTATGTGCAACTATAGTCTAAACTGCTGATTGAATTTTGGAGTCTTGTTCTCATGAGAGCCAATAGTACCTCTAGGATCTATCCAACTCTCTTGACGTTTAGATATTTTCTGCATGTCTGATGATTCATTTTGCAGTTCTGAAGATATTTTAAATGAAATGCTTCAAAATTGTTTGTAACTTGGTAACAATATCCCTGCACATATTGTAAGCTCTTGGGATATGAAATTACTTACGTGCAGAATTTTACTGACCTCAATGACTAGGTGAGAGTGTATATATATATATATCTTACATCAAGCAGGAAGTTTTGTTTGCTGTAGTTCAATGATTTACTTGTGCAGGGGTGGCTTCTTGGAGTTCTGACTTTTTCTATTTATTTATTTTTGATATGGAAGATAACAAAATTTCCCAACAATGTCAGGGAGTTTTAAAAATTAACCTCCAATTGGCATTAATCGTAAGATTTATATTTGGAAAAAGGTTTTAGAGAGAGTACACCACTGTGAACAAAGAAATACAGCCAGATACCACACTTCCTCTAACTCTCTAGCTTTATCTTCAAAATTCTTAGCTCCAAAGCAAAGCTCTGACCGCCATGTTCTACATGATCTTGGTCCTGCTCTTGGGTGGTGTACAAAGCACAAGAAAATCTTTTGTAATTATAGTTTGTCTATGATCCAATCTAATTGGAATGCTCTCACTTAGTCTTTTGTTTCGGGAGGGGGTTCTCTCTTCCCCTTGCCCTTAGGTTGTATTTTGTGACCTTGTGCATAATATGATCTTTCCTGTTTCTTATAAAAAAAAAATAATAAAAAATCTTTGGTTTCTTTCCTTTATAATCCTCCTAAAGAATGGTTTTAGTTTCGTTCCACATAATTTTAAATATCTTTAAACAGCTTACGACATAGAAAATAGACCAAAATTCTGGACTACATGCCAGGAAACAGCAGCAGACCCAAAATTTCTTGGAAAATTATTGCAGCACCTTGTTGCAATAGGACAGTGAAGGAAAGTACAACTTTGGTTCTCAACAACCTGATTACATTAGCAGCATTAAGTGGGATGAAGAACCATGTTTGATTCTTTTGTGTATTTTATCCACTCTTAAGTCTTGGACAATTAGGAGCCAAAGCCAAGTGATGAAAATCTAAGTATGGAAATGATTGCAAACTTTTGTTTTGTGGAAAAGTATTTAAGGAGGCATTTCATGACCATGAACAACACACAACACTTGCTGGATATTGAAACGCAAGCATGTATTTAAAGTGATCATCAAGTGTATTTAAATGGCTTTGGCGATTTCATCATGAATCCGACGCCTTGTGGTACAAGGTTATGCTAGCAAGTATGGGCCTCACCCCTTTGAGTGGATTGCCGGTGGGGTTAAAGACACTTCCAAAAATCCATGGAAAGAAATTTCAGCCCAGTTTCCTATTTATTCTCACTTTATTCATAATGTGGTGGGAGATGGGAGGGATACTTATTTCTGGGAGGATAAGTGGATTGGGGATGCTCCCCTTTGCTCTTTTTTTTTTTTGATTGAAAAACCAACTTTCATTGAGAAAAAATGAAAGAATACACGGGGATACAAAAAACAAGCCCACAAAAAGGAGTTCAACTAGAGAAAGGGACCCCAATCAAGCAAAATACAACTTAACGGATAATTACAAAACATCTTTGAGACTGAAGCCCAAAGAGAAACATGATAACGAGTGAGGGACCACACATCCTCAGGATCTCTCTCTCTCCCCCTAAACACTCTATTGTTCCTTTCACCCCAAAGATTCCACAATAAAGCACACATCCCCCCGAGCCACAAAAAACTCGCTCTCTCTCGAAATGGCGGATGGAGGAGGAACTCCTCGATCATCTCCCTGTGGTCAACAAAAGATATCCCTTGCAACCCAAAAACCTGACCAAACCGATCCCACGCAGCACGCGCAAAGGCACAACTCCACAGAATATGATCCAGATCTTCCTCCGCCTTCCGACACAGAATACAGCAAAACGGACCAACCAAAGAAGGCATCCTTTTCCAACAGACGATCATAGGTATTAACCCTGCCATGGATAACTTGCCACATAAAAAACCTGATCTTCTTCGGAACTTTAATCTTCCACACGCGAAAAAATAGACTCACTTTGGGGAGAAGGAAGCAAGAGCCAACGGAAAAGGGAGCTACAAGAGAACCCGACAGAAGGACTAGGGCTCCAACAACGAATATCCCTCCTCCCCACCCTGAAATCAAACTCCTCAATCAAAGACATAAGGGACATAACATCCGTCGTTTCCCTATTGGACAACGGACGACTGAAGCCAAAAGAAAACGAAGGAGAGCTCCCTGAATGAAACAAAACATCAGCCACAGAGCGGTTTTTCATGGAGGATAAATAGAACAAACGAGGGAAAGATAGACAGAGGGGTCTATCCCCCAACCATCTGTCTTCCCAGAAATACGTATCCTTCCCGTCCCCCACCAAACAATGAACAAGGCTAGAAAAGGTAGGAATCTCGAGGGCTATATCTTTCAATGGATTTTTGAAAGTGCCTTTACCCCCACCCGTCAACCACTCATTAGGATGAGGACCGTATTTGCTCACAATGATCCTATGCCAAAGGGAAGAAGACTCGAAGGGGAACTGCCAGAGCCATTTAGCTAACGGGGCTTTGTTGCGAACCTTAAGATTCCCCAATTCTAAACCCCCCAAACTAATCGACTTACCCACAACCTCCCAACTCACTAGATGGGCCCCTTTACCTCCCTCTCCCCCCTTCCATAAGAAATCCCTCATGAGCTTCTCCATTCTCCTACACACCTTCTGGGGAGCTCTAAACAACGAGAAGAAGTAAGTAGGGATCCCACTCAAAACAGATCAGATAAGAGTTAACCTTCCTCCTTTAGAAAAGAAACTCCTTTTCCAAGAGGCAAGCCTCCTTCTCACCTTATCTTCCACTGGACTCCAGAAAGAAAGACTCCTAGGATTGTGACCAAGAGGAAGACCTAAATAGGAGATCGGGAACACACCCACATCACAACCCACTAAGGAGGCCCACCTACCGACTTTGGTATCATCACAATTCAAACCTATCACTTGGCATTTACTTCTATTGATCTTCAATCCTGACATTAACTCAAAGAATCCCAACATATGGTTCAGGATCAGGAAGGACTCCTCTTTACCAGAGCAAAAGAATATCGTATCATCGGCAAACTGCAGATGGGACAGAGACACACCTTCCCTACCCACCTTGAAGCCCTCAATAATTCCCCCCTCAACCCCTTTTGATATCATTCTACTAAGAGCATCCACCACTAAGAGAAAGAGAAAGGGCGATAGGGGATCACCTTGCTTAAGGCCTCTAGACACCACGATTTTACCTTTGGGGCTACCATTCACAAGAATCGAATACCTCACCGATCTCGTACAACTCCAAACCCACGATCTCCACCGATATCCAAAGCCCTTTTTAGCCAAGATTTTGTCAAGAAAGTTCCAGTCCACATGATCGTAGGCCTTCTCAAAATCGATTTTGAGAATCACACCTTCCTTCTTAGAGGACCTATAGTCTTCAATGGCTTCATTAGCAATGAGGGCTTGATCCAAAATTTGTCTACTTGAGATGAAAGCACCCTGCTCCTCTAAGACCATGGAAGGAAGAACTCTCTTCAATCTATTAGCAAGGACTTTAGCAATAATTTTATAGACACTAGTCACAAGACTGATTGGTCTAAAGTCCTTCACCCTAAGCACCTTCTCCTTCTTAGGAATCAAGCACACGAAAGTCTCGTTCAAGGAACTATCAAGGGTGCCTCTTTCGTAAAACTCCCTAAACACCCGCAAGAGATTCGACTTAATGACTTCCCAATTTTCCTGGAAGAAGCCCAAAGAAAACCCATCGGGACCCGGGGATTTATTCCTATCACACTCAAAGACCACCTTCCTAATTTCCTCCACAGAAAAAGGGGAATCCAAATCCGTCTTCTCACTATCCAAAATAGGGCTCCAGTCTAACCCTTCCACAAAAGGTTTGGGCTCCATTGAGGGGCCATAAAGGTTCGAGAAGAATGTGAGGATTTCCTCCTCAATCTTCTTCTCCCATCTAAGCTTTTCCTACCATTAGCCCAACGATGAAAGAACGCCGAGTTGCTATCACCATCCTTAGCCCATTTGATTTTAACTTTTTGATGCCAACTGCTGGTCTCCTTAAGCACAACTTCGGCAAGCTCCATCTTTAAAGCGAGACTTTCCTCCTTCATGCCCTCTTCCAATCTACCTTCCTCTTCCAGGTCGTCAATAACTTTGATCCTCCCCAAAATTTCCTTTTTCCTAAGCCTAAAGTCTCCGAAAACCTCCTGGTTCCACTTTTTGAGCTCCTTCTTAAGCACCCTCAATTTTCCCATAAAACGATACCCCTCCCACTTACCATGCACCTCCCCATTCCACCACACCGGGAGCGAGGATTTAAAGGACAGGTGACTCATCCACATATTTTCAAACCTAAAGGGACAAAGACCCCATTTGAGATCCCCAGAATTGAGAACTAAAGGCCAGTGATCCGAGGTCACCCTGGGGCCCAAACTTTGTCTGACAGTACTAAAGGCTTCCATCCAACCTCTGGACAACAGAAAACGATCAATCCTACTTCTGACACGACTATTGGCCCAAGTAAAGCTCCCATTCATCAATGGAGGGTTCGTGAGGCACGATCCCTCAATGAACTCATTGAATCTTTTCATGGACCTAGTGTATCTACCCCCCCCCCCCCCCCCCCCCCCGAAGATTTCTCAGAGGGCGCTCGAATCACATTAAAATCCCCAGCCATGCACCAACAATCACCACAGAGGCCAGAAAGATCTCCCAACTCCTTCCAAAAATCCGATCTACCTCTAGTTCTAGGGGGACTGTAAACACCCGTCACCCAGCTAACAACACCATCCTTCAGCCGAAAAGAGATTGACACGGAAAACAAACCTTTAATGACTTCGGTCGGAGCAACCACCCTACTATTCACCAATTGACGATTAACGCAACCTCTCTTAGTTTCCACTAAAATGACAATATCCGGATTTTCTTGAGATATAGTCTCTTTCACCAATCTCCGCTTAACTTTACCCCCCACACCCCTCACATTCCAGGACAACAAAATCATTAGGAAACCACCACCTCCCCGGCTTGCTTAGAAGCTCTCTTTTTATCGTAATTAACCGAACTATCCAATTTCCTAAGCTCTTTTTCCACCTTATCAATCTTAGCAACCTTTTTCTTTTTTCCCCCCTCATTCTTGCTGACTTTCGGCTCTTTGGGCATTGCAACTGTAGCAGGTTGACTCTCCTTTGGAGGGATCGCCTGGATACCTACGGAGGCTAGAGCTGCCCACCCCAAGGGCCAGCTTCCAATGGGGCCCCATTCAACGAGCAACTCACATTAAGAGGGCTAGAAATAGGAACAAAATTACCCATCGCAACCCCATTGTAAAATTGCTGACCTCCCCCCCCCCCCCCCCCAGATTCACTCCCCGATGACATAGAAATTGGGACCAAATTCGAAACACTCTTTCCTATTGAATAATACACCGGGTGGGGAAAAGCACTACCAGAACCATGGAAAGAGCTAGGGTAGGAATTAAGGATGAAAGGAGGCACTGAGTAAGGATAAAAGCCCATGATATTGTCCCCTGACGACATCCCCTAGATAACAAGCATCGAGTTTTCACACGGATTGGGATAGACCAAGTTAGACACACTCCCCTGCTTATAACCCAACACCGAAGGAGAAAGAACCGAGGAAGGAGGACTTACCTGGCAAGATATCCATGGCGAACTAACCTGGATCGGCTGAATCGAAGAAGTCTCCGTGATGGGTCTGTTGCTGATCAAGTCTTCGGAAGCTTCCTGCCATCGGTCCTTATTCTCCTCAGACGGCTCAAACTGATTACTAAGAGCGGTTGGCAAATCACGAGGATCCTGCTCTTCCTTCGTCGGACCCACTTGGACTTGACCTTCATTCTCCTCATTCTCGAACAGATCCTTCACACTGATAACTGGCCCCTGAGGAGCGAACGGGGTCGAGAGGAAAGAATCATCTTCTGAATAACTTACCACGGATTGGTCAGATGCATATCCTTCATCCCCTAAGAGATTTTCTAACGGCCCAAGCCCAAGACTTCGTTCCATCTCCATCTGATAATCATAAGGTTTTGGCGCCTCCTTTTGGGCCCACAATACATTGGGATCGTTTGGCCCTTCATCAATCTCATTCACGGGCCCGCTTTCTCAGATTCGCTTTCGGTGAGGCTCGCTTCATGATCTGCAATTTCTTGGACCCATTAACAACCTCACAGCCCAACTTATGTGGGCCTACTTTGGGCCCTTTAATCTCACCTCTCTCAGAATCTTTTAAACCTTGTGAAGACTCACCAACCCAAGGCCCACTCTCTACATCTTGATGACAACTTAACTGGGCCTCAACCTCCGTACTACTCACGGGTTTTTTACCCTCTCTGCAATAGCTGACCCGCTACAGTGGCTGACACTGGCAGCTTTGACAGAACCATCTTCCTCTTTCCCTTTCCTTTCACGCTTTCTCTCTCTCTTCCTCTGCTTCTCGTCGGCCGGCTACAAGTCTGATCGGAAAAAATACATTCTCATGCTTCAGATAACCTAACAAAGGAATGAATCCGTCTGACCTTCCTTTAGCTTGGAAGCAAACCTCTTCTGTAGACACCCCTTCCCCAAAAATCTCTTCGTTCTCAGATAGTCCCCCACACAAATCCGCGACAGACTCAATCAACTGGCGAGTTCTTAGAAAAGGAGGGATGTCCAACACTGTGATCCACCCGCCTGAAAAAACCAATTTCCGATCCTCCGCGATTCGTTTCAGATCCCACTGGTGCACTCGAAAGACCCTCGGATCGGACTTATTGCCTTCTTCCACCACAGCCTCAGCTTCGGCTTTAGTATTGCAAATACCCACCGCCATGTTTCTGCAAAACGGTTTAAACATCATACCAGCTTTTACTCTCTTTTGAATAGCATCTCTAATGGTGAACCATGCCTCCCCTGCTTCAAACCTCTCTATAATCACCGTGGATGAGCATTCAAACGCAAAATCGAACTCGTCTGAACATTCAGAGATTTCACCCTCTAGTTCCTTCCCAATCTCGCCCTCGACTGGATAATCCTCGGTTAAACCCACCCCCTCAGATATCGCCTGCGCAAACGATTTCTTTTCGACCTCTTTCCTACCTGAAACCTGCTTAGGAACTATCACCTTCCTCCCCTTCCCATGTGACGGAGATTTGAGAATACCTTCAAATTCCTCTGCCATAGTACCCCATCTTTTACCATTCAGACCCTCCGGAAAGACGATAGACGACCTCCTACCCCTGAAGGGCTCCATCGATAGGAGAATAAATCTTCCTCTCGCATTGGACAGAACCTGAAAGAAAAGCACAGCTGCATCTAATCTTCTTCTTCTCCAGAAACCCAACGGTTGCCTTATCTTCGAAACCGACACGAGACAATCACGGACCCACGCCAACGAACTCACATCCAACTCTACCAACCTAACTCTGGACCCTCCCCGTTCTTTGACTGAAACTCTGTTTCCACACTCACTCCTTCGAAGGGAGAAAGTCTTCCGGTCGATTATCACCTTCTTCATCTTCCTCTCCTCATGATGCGAAGGAGAAGCTCTAACTCTCTCTCTCTCTCTCTGCTCCCCTTTGCTCTTTGTTTCCTCGTTTATATCAGTTGTCTTCTTTGAGGAATCATTCAGTGGCGACCATTCTTTCGTCTTCTGACAACCAGGTTGCCCTAGCTCTGGGCTTTCATAGACCTTTGACAAACAAGGAAACGACAGACATTATGTCTCTTCTCTCCATGCTTGAGACCTTTAGATTTTGTCCTGACAGGAGGGATATCTGCTTGTGGAGTCCTTGTCCTTCTAAAGGTTTTTCGTGCTCCTCTTTATTTCACTGATTGTCTATCTCTTCTTTGGGGAGTGGCTCGGTTTTTGCTTCATTATAGAAGGTAAAGATTCCGAAGAAGATTAGATTCTTTGCATTCCGAAGAAGATCAGATTTTGGCTAGAGGGTCTTCTTTGGTTGGGTCATTCTGTTGTATTCTCTGTAGGAGGGAGGCTAAGGATCTGGACCACTTGCTCTGGGGTTGCGAGTATGCCTTGGCAGTTTGGGGTTGCTTCTTCTAGGAGTTTGGCTTTTGTTTTGTCAGAGGTCTGGCATTTAGGACGATCTTCGAGGAGCTTTTTCTTTGTCCGCCCGTTCGTGACAGAGGGCGCTTTTTGTGGCAGGCGGGGGTTTGTGCGATTATTTGGGGTCTGTGGGGGAGAGAAACAATAGAATCTTTAAAGGGCGCGAGAGTTCTTGGAGCGATGTTTGGTCCCTTGTTAGATTCTATGTTAATCTTTGGGCCTCGGTGTCTAAGCCCTTTTGTAATTATTCCTTAGGTTTGATCTTGCTTGGTTGGAATCCCTTTTTATAGTGTGGCTCCGCTTTCTTTTTTGTGGGCTTTTCTTTTTTGTATGCCCATGTATTCTTTCATTTTTTCTCAATGAAAGCTCGGTTTATTATAAAAAAAAAAGTGAGAAGAATTGAAAGGGGAATGTTTACTTTACATGTTTCTGTTGTATATAATATCGATTTATTTACCCATTCAAAACTGCTCATCCTCCCGATCTGGAAATGCATTTTGGTTGCCTTTTGCATTGAGTTTGTCAAGAGACTTTATGCTTTGAAAATGCTGGCAAGACCCTTTAGGAGGCCAGGTATTCATAGTTGAATCCCTAACTCAGAGTCAGAGATATCTCTTCTAAACAACAAATTTCATCCCCCTTGCTGTTCAGGCTGGCATCTGTTGATGAGGAAAACTCTAAAACTTGCCACCTGATATAGTCTTGGGACAACCAATTTGAAATGAAATTACCCTTACAGACATCTTCCCAAAACTTAATCTTCTCTCCACTGTCTAATTCAAATGCTACCATGTATCTCTCTGCTGGATAGGATTTTGTCTATTCAGATGCCCCCCACTGAGGAAGTGTCCAAGTGATGGAAATGTCCAAGTTCTTTAGTTCCTGCTTAAGTAGGAACAGGTTGGGGAAGTAATGTTTTTCTCCTGGCTATATTACCATCAATACATCTTGTTTCCTCCACTCCATTTATTGAAGTCATGTATTGATTGTCTGCCTCATTTTGGTAATTAAATACTCATTTCTTCGTTTCTACTGCACTTCATAGAATCATTGTTATCACACATTTTTTTGTAATCTCAACTACATGAGTCATAATGGATAAAATGAGGTGGATCTACTGCTTTTGTTGATCCTCATCTAAATTTCTTTATAATTTTATTCTGTTTCTACTTAAACTCAATTTGGTGAAGCTTTTTGTATGCTCCTTTTGGAAAGGGTTTACATTAACGTTTTTGTTCGTCATTGATTTTTTTTTTTCTTGTAAAAAGAGATTATTGAAATGCATAAAGGATAACATGACAACAAATTTCTACAAATGAGTGAGTTAAGTTTCTCCTGTGTTTTAGAAAATTGGAGCCAGTGATTGAACATATGAACCATCCAATAATTTAGTTTTGGAGACAATTATCATGCAGTTCATTTGCTTAATTTGTCTATTTTAACACTTCCCTAATAGTAAAGGCGTGGCATTCCCTGCTTGTGAGATTTCTCGGTACTTAAGATTGCTATTCTTAATGTTAACAGATAATTGGATGAGCAAATGAATGTGGGGGGAGAATCCACTAGCATTAGTGACCGATTTTGCCAAGAATATCTTGCTGACATGGTTGATCTTCAGTGCCCTTCTCCAACACACCAACCTTGTGTGTCTGATCATTTGGAACAAATCAAGGCTATGATAACTCAGGTATGGATTTTTTTACGACATGGTTGATCTTCAGTGCCCTTCTCCAACGCACCAACCTTGTGTGTCTGATCACTTGGAACAAATCAAGGCTATGATAACTCAGGTATGAATTTTTTTTACCCCCTCAACAATAAACAAAATGCAAAATGCACCAATCCAGATCTACAAAGTAAAATATATATATATATATATATATATATTTTCTTCTGTAAATTGCAATCACATTGTTTTGTTTACAAGTATATGTACAATTATTTTGTAGAGTACCCATAACTTTTGTCTGCCAAGTGGTGCAGATTTGCATTAGGAATTATTGTTGCAGTGTGTTTACAACCTAAATATTCTTTAAGGGTCTGTCTTTAAGGGTCTGTTTGAGGCATTGAGTTAGTTATGATAGTCCGTGATTATTATAGTCTGGGGTTATAATAATCTGTGGAGTTAAATAGTTTGTGTTTGGAGTATAGATTATTTTAGTCTGGGATAAAATAGTCTGTGCTTAGGGTGCAGATTATTTTAGTCTGGGATAAAATAGTCTGTGCTTAGGGTGCAGATTATTTTAGTTTGAGATAAAATAGTCTGTGTTTGGGATGCAAATGCAAATTATTTTAGTCTGGGTTAAAATAGTCAATGTTTGAGGTGCTGATTTGTTTAACATGAGGTTCTGAATCAAAGGTTCAAGCTGTTTTTTTCCCAACTTTAACTTTGTACATCAAATATCATATTTTGCAAATATCAATTAAAAAAATGTTTGGGTTTAATTTAAAAAAGATAAAGTTCTGGGTATAGGGGTTAAATTATGTGTTTAACTTAAAAAGAAACAAAAATAACCTAAGGTAAGGGTTGATTTTCTTTGTTTTAGGGTCATGGTTTTTCACAAAAACAAGTCATGTTAGGATTACATATAGAAAAAAACCATATTAGTTTCCTTTCGGTATTTTCAACATAAAAATGGTAAATGCTTATTGAAAAACCATTTTACCTTTATTATCAAAAGAATCAAATAAAATAGTAATCAAATTAAATAAAAACTTGAGTAGTATATATATATATAATTGCACAAAAAAAAAAAAAAAATCTAGGAGGTAATGTTGCCTTGTATGGGCCACCACCATGGTAACACAAAAATATTGTTTCCTATAAATATATGAATACAGAAGACAGATAAAAAATTCTTGAAAGCAGCATGAATTTGTTGAGTGGTGGGTCAGTCGTGTTTTTCCAGGAGGTAGTCACAATACTCCAACTTCAGAGGAGCTGGAACAAAGAACTGTTGCTTGCATGTCATTGAAAAGGATATCCATCAGCTTCATCTCTTCCAGTTATCTAGTTCCGATACCTCCATCAAGTGGGTCACAATCCTATCTCAGAATTCGGTCTCTGTGGCACGTTTTTCTTTTGGCTACTTTGCAATGGACTTTAGTTGCTCTGTGTACGAGACCATTCCATCTCTGACAATTTCTGTAATGTGCATGTCAGACTCTAACCTCTTCTTCTTACTCCCCTGTGACGACCTTCCTGTTGGGCAAGTTCGACTGTCTGGTGTTTCTCGAGGCTCATATTGTGTCATATTTGTAGTAGGCATGGTGAACGACGGGATCGGGATGTCGTTCTCTAGGAATCCATTGAGGTCTACCTCATCTTCTGGCATGTTGGAGCCCATCTCCCTCATCACCTCTGACACCCTCCTTGTGGCTCGATCCTTCCCGAAAACATAGGCCTAGTCCTCGAAGTGCAGGAAAGGCTTGTTTCGCATGCCTTTTGCGATAGGATGGTTCTGTATTCACCCAAAAGTGTATGTTAGAAAGCGATAAAATATGAAAAGTCAATACGGTCACACGTTTTTACCTTCACCCACAGGTCAAACATTTCCTTCTCTACCTCGATATAGTTAAATTCATCGTTCTACCCAAAGCCGCTGCATCCAGGACCCATCATTTCTGCAATGGCTTGGTATTGTTTCTTTAAGGTGCGAACCTTGGATTCAATGTTGCTTTGTACTGGAATGTCCCGTCCAGGCAGTTTCTCCTTCATCAAATGCTCTAGTTGCACCAGATACTCAGGCCTGAAGTTCTCCTAGAAAAAAACTGAGCCAGTCACGACCTCTTGTACGGACCCGAGGTGGAAATGGTCGGTATAAATCATTATTCATCCAACTTTATCTAAGTTTGGAGTCACTTCTAGGGTTAGAAACGTGAACCAATATTGCCTCTATTATGTTGACGCAAAATTGCCTCGATGTGTTAGATGAAACATACATCAAGGTCAATGTTAGTGTCTTCGATTGCCCGAGGTATAGAACAAGGAAAGGTGAAATTGTAACGAATGTGCTTGTTGTCTATGATACAAAAGGAGATTTCATATTCGTCCTACCCGAGTGGGAAGGGTCTGCCGTTGATTCCTCAGTTCTTAGAGATGCATTATCAAAACGGACTCAGAGTTCCGAAGGTTAAATAATAAGACCTTTTTCCTTTCAACATAAAACCCTTAGGAAGATGTATTGAGCCAATACCACATTCTATAGGATATTATTATCTGTACGATGTTGGGTACCTTAACGTAGAGGGTTTCCTAGCACCGTATAGAGGGGAATGTTACCACGTTTTTGAATGACGTGGGGCGGGGAATGCACCAACTACTCCAAGAGAATTCTTTAACATGAAGCATTCATCTGCAAGGAACGTGATTGAGAGGGCATTCGGTTTGTTGAAAAAAAGGTGTGCTATCCTCCGAGGGAAATCGTACTATCCAGTTTGAATTCAAGGACGGACCATCGCAGTGTGCTGCTTACTTCACAATCTTATCAACAGGGAGATGAATGATCGTGAAATTCTCGATGAGTTGGATGAGGTGGACTCTACGTCGGCTATAACTGATGGAGAGAGTATTAATTTCATTGAGACTTTCGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAGAACAAATGTTTTCGGATTGGGAGTTATGTAATAGCTAATGGATTAATGTCGCTTTATAGAATTTAGGAATTGCTTCTCTTAATTCAAGTATTTAGTTTTGCTGGTTGTATGAACTGTTTACATTCTAATCATTAATGTACTTGTTTATCTTATTAATGCAATTTTCATTCGTGAACTCTGTGTACGTGATTTTTAGTACGTCATTGTTTAACATTTCCACAATGTGCGTATTCACATAATAGAATGGTCTGTTCGTCTAGAGCTCTGAAACACACTTGGACGCAAACGAGGATGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAGTTCATGCTGGCGGTTGGAGGTCTGATAATGAGACTTTCAGATCTGGGTATCTGGCGCAACTGGAGCATTTGATGAAGGAGAAACTGTTTGGATGGGATGTTCCGGTACAAAGCAACATTGAATCCAGGGTTCGCACTTTGAAGAAACAATACCAAGTCATTGTAGAAATGACGGGTCCTGGATGCAGCGACTTTGGGTGGAACGATGAATTTAAGTGTATCGAGGCAGAAAAAGAAACGTTTGATTTGTGGGTGAAGTTAAGAACGTGTGACTGTGTTAACTTCTCATATTTTATCACTTTCTAACATACACTTTTGGGTGAATGCAGAACTATCCTATCGCAAAAGGCATGCGAAATAAGTCTTTCCCGCACTTCGAGGACTTGACCTATGTTTTTGGGAAGGATCGAGCCATAGGGAGGGTGTCAGAGGTGATGGGGGAGATGGGCTCCAATGTGCCAAAAGATGAGGTAGACCTCAATGGATCCTCAGAGAATGACATCCTGATCCTATCGTTCACCATGCCTATTGTGAACATGACACAGGATGAGCCTCGGGGGACGTAA

mRNA sequence

CCCACAAGCAGGGGGAAAAAGAAATTCAGACTCAGATCCACGGCGGAGCCTTCAACTCCGGCCCCGATTCCGTCCTAAATGTCGAAGGATAAGGGAGGTATCTTCACGAGAACGGAAGGACGTTTCATTCAGTGAATGGCGGAGGAGGAAGTTAGGGTTTACTTATAATTCCATTACGCAGCAGGGGATCTTCACGCCAAAAGAGCCTGGTAAGGTTGATACGTACGTCTATGGCATCACGACCCACGATTTCAGCCATTTCCTCGCCGCCGTCAACTTCGACGTCCTCTACAGATAATTGGATGAGCAAATGAATGTGGGGGGAGAATCCACTAGCATTAGTGACCGATTTTGCCAAGAATATCTTGCTGACATGGTTGATCTTCAGTGCCCTTCTCCAACACACCAACCTTGTGTGTCTGATCATTTGGAACAAATCAAGGCTATGATAACTCAGTGCCCTTCTCCAACGCACCAACCTTGTGTGTCTGATCACTTGGAACAAATCAAGGCTATGATAACTCAGAGCTCTGAAACACACTTGGACGCAAACGAGGATGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAGTTCATGCTGGCGGTTGGAGGTCTGATAATGAGACTTTCAGATCTGGGTATCTGGCGCAACTGGAGCATTTGATGAAGGAGAAACTGTTTGGATGGGATGTTCCGGTACAAAGCAACATTGAATCCAGGGTTCGCACTTTGAAGAAACAATACCAAGTCATTGTAGAAATGACGGGTCCTGGATGCAGCGACTTTGGGTGGAACGATGAATTTAAGTGTATCGAGGCAGAAAAAGAAACGTTTGATTTGTGGAACTATCCTATCGCAAAAGGCATGCGAAATAAGTCTTTCCCGCACTTCGAGGACTTGACCTATGTTTTTGGGAAGGATCGAGCCATAGGGAGGGTGTCAGAGGTGATGGGGGAGATGGGCTCCAATGTGCCAAAAGATGAGGTAGACCTCAATGGATCCTCAGAGAATGACATCCTGATCCTATCGTTCACCATGCCTATTGTGAACATGACACAGGATGAGCCTCGGGGGACGTAA

Coding sequence (CDS)

ATGAATGTGGGGGGAGAATCCACTAGCATTAGTGACCGATTTTGCCAAGAATATCTTGCTGACATGGTTGATCTTCAGTGCCCTTCTCCAACACACCAACCTTGTGTGTCTGATCATTTGGAACAAATCAAGGCTATGATAACTCAGTGCCCTTCTCCAACGCACCAACCTTGTGTGTCTGATCACTTGGAACAAATCAAGGCTATGATAACTCAGAGCTCTGAAACACACTTGGACGCAAACGAGGATGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAGTTCATGCTGGCGGTTGGAGGTCTGATAATGAGACTTTCAGATCTGGGTATCTGGCGCAACTGGAGCATTTGATGAAGGAGAAACTGTTTGGATGGGATGTTCCGGTACAAAGCAACATTGAATCCAGGGTTCGCACTTTGAAGAAACAATACCAAGTCATTGTAGAAATGACGGGTCCTGGATGCAGCGACTTTGGGTGGAACGATGAATTTAAGTGTATCGAGGCAGAAAAAGAAACGTTTGATTTGTGGAACTATCCTATCGCAAAAGGCATGCGAAATAAGTCTTTCCCGCACTTCGAGGACTTGACCTATGTTTTTGGGAAGGATCGAGCCATAGGGAGGGTGTCAGAGGTGATGGGGGAGATGGGCTCCAATGTGCCAAAAGATGAGGTAGACCTCAATGGATCCTCAGAGAATGACATCCTGATCCTATCGTTCACCATGCCTATTGTGAACATGACACAGGATGAGCCTCGGGGGACGTAA

Protein sequence

MNVGGESTSISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMITQCPSPTHQPCVSDHLEQIKAMITQSSETHLDANEDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVPKDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT

Homology

[Close]

BLAST of Lcy09g008880 vs. ExPASy Swiss-Prot
Match: Q9LYL3 (Cysteine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g56300 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 2   NVGGESTSISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMI 48
           N G +   +S+RFC+EYL DM  LQC  PTHQP VSDH+EQI  MI
Sbjct: 85  NCGEKPLDLSNRFCEEYLLDMAALQCLLPTHQPRVSDHMEQIIKMI 130

[Close]

BLAST of Lcy09g008880 vs. ExPASy Swiss-Prot
Match: B3LFA4 (Cysteine--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At5g38830 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.3e-06
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 4   GGESTSISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMI 48
           G +   +S+RFC EYL DM  LQC  PTHQP VS+H++ I  MI
Sbjct: 88  GEDPLDLSNRFCDEYLVDMGALQCLPPTHQPRVSEHMDNIIKMI 131

[Close]

BLAST of Lcy09g008880 vs. ExPASy Swiss-Prot
Match: A0A1D6LAG9 (Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial OS=Zea mays OX=4577 GN=CPS1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-04
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 3   VGGESTSISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMITQ 50
           +G +  S+S RF  ++L+DM +LQC  P+ +P VSDH+++I  MI Q
Sbjct: 146 LGEDPFSLSKRFSDDFLSDMANLQCLPPSVEPRVSDHVDEIINMIKQ 192

[Close]

BLAST of Lcy09g008880 vs. ExPASy Swiss-Prot
Match: F4IPY2 (Cysteine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SYCO PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.7e-04
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 9   SISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMITQ 50
           S+S RFC+E+  DM  LQC  P+ QP VSDH+ QI  +I Q
Sbjct: 150 SLSRRFCEEFNRDMEQLQCLDPSVQPRVSDHIPQIIDLIKQ 190

[Close]

BLAST of Lcy09g008880 vs. ExPASy Swiss-Prot
Match: Q0IZQ2 (Cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0556500 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.3e-04
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 3   VGGESTSISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMITQ 50
           +G +  S+S R+  ++L+DM +L C  P+ +P VSDH++QI  MI Q
Sbjct: 152 LGEDPFSLSKRYSDDFLSDMANLHCLPPSVEPRVSDHIDQIINMIKQ 198

[Close]

BLAST of Lcy09g008880 vs. ExPASy TrEMBL
Match: A0A5A7SWU2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00190 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.3e-41
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+  LVE L+ LV  GGW+SDN TFR GYLAQL  +M EKL G  V   + I+ R++TLK
Sbjct: 121 EEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK 180

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           + +Q I EM GP CS FGWNDE KCI AEKE FD W  ++P+AKG+ NK FP++++LTYV
Sbjct: 181 RTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPVAKGLLNKPFPYYDELTYV 240

Query: 202 FGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT 256
           FG+DRA GR +E   +MGSN P    D  D+    E+   + S     ++++QD+ R +
Sbjct: 241 FGRDRATGRFAETFADMGSNEPGGGYDRFDMGDGKEDFPPMYS---QRIDLSQDDVRAS 296

[Close]

BLAST of Lcy09g008880 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.8e-41
Identity = 89/179 (49.72%), Postives = 120/179 (67.04%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+  LVE L+ LV  GGW+SDN TFR GYLAQL  +M +KL G  V   + I+ R++TLK
Sbjct: 16  EEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLK 75

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           + +Q I EM GP CS FGWNDE KCI AEKE FD W  ++P AKG+ NKSFP++++LTYV
Sbjct: 76  RTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYV 135

Query: 202 FGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT 256
           FG+DRA GR +E   ++GSN P    D  D+   +E+   + S     V+++QD+ R +
Sbjct: 136 FGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYS---QGVDISQDDVRAS 191

[Close]

BLAST of Lcy09g008880 vs. ExPASy TrEMBL
Match: A0A5A7TC56 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00560 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.8e-41
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+  LVE L+ LV  GGW+SDN TFR GYLAQL  +M EKL G  V   + I+ R++TLK
Sbjct: 16  EEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK 75

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           + +Q I EM GP CS FGWNDE KCI AEKE FD W  ++P AKG+ NK FP++++LTYV
Sbjct: 76  RTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYV 135

Query: 202 FGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT 256
           FG+DRA GR +E   ++GSN P    D  D+   +E+   + S     V+++QD+ R +
Sbjct: 136 FGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSPVYS---QGVDISQDDVRAS 191

[Close]

BLAST of Lcy09g008880 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.9e-41
Identity = 85/159 (53.46%), Postives = 110/159 (69.18%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+ K VE LV LV +GGWRSDN TF+ GYLAQL+ +M EKL G ++   S I+  V++LK
Sbjct: 16  EEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLK 75

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           K Y  I EM GP CS FGWN+EF+CI AE++ FD W  ++P AKG+ +KSFP+++DL+YV
Sbjct: 76  KTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYV 135

Query: 202 FGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDI 236
           FGKDRA G  SE    +GSNV     D + L  S + DI
Sbjct: 136 FGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDI 174

[Close]

BLAST of Lcy09g008880 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.9e-41
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+  LVE L+ LV  GGW+SDN TFR GYLAQL  +M EKL G  V   + I+ R++TLK
Sbjct: 16  EEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK 75

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           + +Q I EM GP CS FGWNDE KCI AEKE FD W  ++P AKG+ NK FP++++LTYV
Sbjct: 76  RTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYV 135

Query: 202 FGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT 256
           FG+DRA GR +E   ++GSN P    D  D+   +E+   + S     V+++QD+ R +
Sbjct: 136 FGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYS---QGVDISQDDVRAS 191

[Close]

BLAST of Lcy09g008880 vs. NCBI nr
Match: XP_031739703.1 (uncharacterized protein LOC116403241 [Cucumis sativus])

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-41
Identity = 92/203 (45.32%), Postives = 129/203 (63.55%), Query Frame = 0


Query: 58  CVSDHLEQIKA--MITQSSETHLDAN-----EDAKLVESLVSLVHAGGWRSDNETFRSGY 117
           C+   L+Q+    +++ +S + +  N     E+A LVES+V LV AGGW+SDN+TFR GY
Sbjct: 25  CLLKVLKQMHGCMIVSMTSSSRVPKNVWTKEEEATLVESMVELVFAGGWKSDNDTFRPGY 84

Query: 118 LAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAE 177
           LAQL  +M  KL G +V   + I+ R++TLK+ YQ I EM GP CS FGWND+ KCI AE
Sbjct: 85  LAQLLRMMAAKLSGCNVHATTVIDCRIKTLKRSYQAIAEMCGPSCSGFGWNDDAKCIVAE 144

Query: 178 KETFDLW--NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVPKDEVDLN 237
           KE FD W  ++P   G+ NK F ++++L Y+FGKDRA G  +E   ++GSNVP    +  
Sbjct: 145 KELFDNWVRSHPATNGLLNKHFSYYDELAYLFGKDRATGAHAETFADVGSNVPPGLEEFP 204

Query: 238 GSSENDILILSFTMPIVNMTQDE 252
               ND+ I S +    NM+QD+
Sbjct: 205 HVDLNDLKIPSMSSHRFNMSQDD 227

[Close]

BLAST of Lcy09g008880 vs. NCBI nr
Match: KAA0035078.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK03601.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 4.8e-41
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+  LVE L+ LV  GGW+SDN TFR GYLAQL  +M EKL G  V   + I+ R++TLK
Sbjct: 121 EEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK 180

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           + +Q I EM GP CS FGWNDE KCI AEKE FD W  ++P+AKG+ NK FP++++LTYV
Sbjct: 181 RTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPVAKGLLNKPFPYYDELTYV 240

Query: 202 FGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT 256
           FG+DRA GR +E   +MGSN P    D  D+    E+   + S     ++++QD+ R +
Sbjct: 241 FGRDRATGRFAETFADMGSNEPGGGYDRFDMGDGKEDFPPMYS---QRIDLSQDDVRAS 296

[Close]

BLAST of Lcy09g008880 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-40
Identity = 89/179 (49.72%), Postives = 119/179 (66.48%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+  LVE L+ LV  GGW+SDN TFR GYLAQL  +M EKL G  V   + I+ R++TLK
Sbjct: 16  EEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLK 75

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           + +Q I EM GP CS FGWNDE KCI AEKE FD W  ++P AKG+ NK FP++++LTYV
Sbjct: 76  RTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYV 135

Query: 202 FGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT 256
           FG+DRA GR +E   ++GSN P    D  D+   +E+   + S     V+++QD+ R +
Sbjct: 136 FGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSPVYS---QGVDISQDDVRAS 191

[Close]

BLAST of Lcy09g008880 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-40
Identity = 89/179 (49.72%), Postives = 120/179 (67.04%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+  LVE L+ LV  GGW+SDN TFR GYLAQL  +M +KL G  V   + I+ R++TLK
Sbjct: 16  EEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLK 75

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           + +Q I EM GP CS FGWNDE KCI AEKE FD W  ++P AKG+ NKSFP++++LTYV
Sbjct: 76  RTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYV 135

Query: 202 FGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT 256
           FG+DRA GR +E   ++GSN P    D  D+   +E+   + S     V+++QD+ R +
Sbjct: 136 FGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYS---QGVDISQDDVRAS 191

[Close]

BLAST of Lcy09g008880 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-40
Identity = 88/172 (51.16%), Postives = 114/172 (66.28%), Query Frame = 0


Query: 82  EDAKLVESLVSLVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLK 141
           E+A LVE +V LV AG W+SDN TFR GYLAQL  +M  KL G +V   + I+ R++TLK
Sbjct: 16  EEATLVECMVKLVSAGRWKSDNGTFRPGYLAQLLRMMVVKLPGCNVHATTVIDYRIKTLK 75

Query: 142 KQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYV 201
           + YQ I EM GP CS FGWND+ KCI AEKE FD W  ++P AKG+ NK FP+++   YV
Sbjct: 76  RSYQAIAEMRGPSCSGFGWNDDAKCIIAEKEFFDNWVRSHPAAKGLLNKPFPYYDKFAYV 135

Query: 202 FGKDRAIGRVSEVMGEMGSNVPKDEVDLNGSSENDILILSFTMPIVNMTQDE 252
           FGKDRA+G   E   ++GSNVP    +     +ND+ I S +    NM+QD+
Sbjct: 136 FGKDRAMGAHVETFADVGSNVPPGFEEFPPVDQNDMEIPSMSSHRFNMSQDD 187

[Close]

BLAST of Lcy09g008880 vs. TAIR 10
Match: AT3G56300.1 (Cysteinyl-tRNA synthetase, class Ia family protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-09
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 2   NVGGESTSISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMI 48
           N G +   +S+RFC+EYL DM  LQC  PTHQP VSDH+EQI  MI
Sbjct: 85  NCGEKPLDLSNRFCEEYLLDMAALQCLLPTHQPRVSDHMEQIIKMI 130

[Close]

BLAST of Lcy09g008880 vs. TAIR 10
Match: AT5G38830.1 (Cysteinyl-tRNA synthetase, class Ia family protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-07
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 4   GGESTSISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMI 48
           G +   +S+RFC EYL DM  LQC  PTHQP VS+H++ I  MI
Sbjct: 88  GEDPLDLSNRFCDEYLVDMGALQCLPPTHQPRVSEHMDNIIKMI 131

[Close]

BLAST of Lcy09g008880 vs. TAIR 10
Match: AT2G31170.1 (Cysteinyl-tRNA synthetase, class Ia family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-05
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 9   SISDRFCQEYLADMVDLQCPSPTHQPCVSDHLEQIKAMITQ 50
           S+S RFC+E+  DM  LQC  P+ QP VSDH+ QI  +I Q
Sbjct: 150 SLSRRFCEEFNRDMEQLQCLDPSVQPRVSDHIPQIIDLIKQ 190

[Close]

BLAST of Lcy09g008880 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 6.6e-04
Identity = 28/111 (25.23%), Postives = 50/111 (45.05%), Query Frame = 0


Query: 129 VQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWN-----YPIAK 188
           V  N    +R L    + ++E  G     F W+     + A+    D+WN     +P A+
Sbjct: 377 VLKNRYKHLRRLYNDIKFLLEQNG-----FSWDARRDMVIADD---DIWNTYIQAHPEAR 436

Query: 189 GMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVPKDEVDLNGSSEND 235
             R K+ P + +L ++FGK+ + GR +  + +     P + V +N S   D
Sbjct: 437 SYRVKTIPSYPNLCFIFGKETSDGRYTR-LAQAFDPSPAETVRMNESGSTD 478

The following BLAST results are available for this feature:

BLAST of Lcy09g008880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYL3	1.5e-08	60.87	Cysteine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g5630...	[more]
B3LFA4	2.3e-06	54.55	Cysteine--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At5g3883...	[more]
A0A1D6LAG9	2.9e-04	44.68	Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial OS=Zea mays OX=4577 GN=C...	[more]
F4IPY2	3.7e-04	53.66	Cysteine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q0IZQ2	8.3e-04	42.55	Cysteine--tRNA ligase CPS1 homolog, chloroplastic/mitochondrial OS=Oryza sativa ...	[more]

BLAST of Lcy09g008880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SWU2	2.3e-41	49.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V6Q9	6.8e-41	49.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TC56	6.8e-41	49.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U0H7	8.9e-41	53.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CWL2	8.9e-41	49.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy09g008880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739703.1	1.3e-41	45.32	uncharacterized protein LOC116403241 [Cucumis sativus]	[more]
KAA0035078.1	4.8e-41	49.72	retrotransposon protein [Cucumis melo var. makuwa] >TYK03601.1 retrotransposon p...	[more]
KAA0038975.1	1.4e-40	49.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064022.1	1.4e-40	49.72	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_031742657.1	1.4e-40	51.16	uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact...	[more]

BLAST of Lcy09g008880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56300.1	1.0e-09	60.87	Cysteinyl-tRNA synthetase, class Ia family protein	[more]
AT5G38830.1	1.7e-07	54.55	Cysteinyl-tRNA synthetase, class Ia family protein	[more]
AT2G31170.1	2.7e-05	53.66	Cysteinyl-tRNA synthetase, class Ia family protein	[more]
AT2G24960.2	6.6e-04	25.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 80..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g008880.1	Lcy09g008880.1	mRNA