Lcy09g008730 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g008730
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ty1-copia retrotransposon protein
Location	Chr09: 8369528 .. 8372692 (+)
RNA-Seq Expression	Lcy09g008730
Synteny	Lcy09g008730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTAACTACCGTCGTTGGTTTCAAAAACTGCTCATTTTCTTCGAACTGTAGGTCGACTACATTCTCACCATTGATTAAGCGGAGAAATCAAAAGCAGCACCTGTCATTGATCTGGAAAAGTCTAAGGAGGTCCAGCCTGATCCACACAGTTCTAAGGAGGTTCAAACAGTTCCTCAAAAATCAAAGGACGATGTTGACATTGATCCAGAAAAATTCGAGAAAGACAACAAGACGGTTCGTGGTCATCTTCTCAATCACATGAATGACTCGTTGTTCGACTTGTTCGTTGTTCACAAGTCATTTAAGGTGATCTGGGACACTCTGGAGTTGGTGGCGATGACGTAGGCAGAAAGAAGTGCGTGGTCGGTAAGTGGTTTCAGTTCCAAATGGTGGATGGCAAACTAGTGATGGACTAGGTCCACGAGTATGAGAATCTGGTGGCAAACATTCTGACCAAGGGTATGAAGATGTGCGAGATTCTTCAGGCGAATGTCTTGCTCGAGAAATTTCCTTCTTCATGGAGCGACTATCGCAACCATTTATAGCACAAGAAGAAGGACCTGACATTACAAGAGTTGATCAGCCACATGCGAACTGAAGAAACCAATAGGCCAAATGATAAGTTGCGATCTCAGTCTTTGAATTCAGTTAATGCCAACTTAGTTGAACCTTCTGCTGCATCAAAAGATAGGTTCAAAAATAAAAATAAGGGAAAAATACACTTTTGGTCCCTGAGGTTTGGGTTAGGTTTCATTTTGGTCACTGAGTTTTCAAACTCGACATTTTAGTCCTTGAGGTTTGGATTTTGTTTCATTTTAGTCCCTCCATCCAATTTTCCGTTAATTACTAATGGATTGCTGACATGACACTATTTTTTTAATTAAAAAATTGTTTTTTAATTTTTTAAAATAAAATAATATTAAAATAATAAAAAAATATTATTATTTTTTATCTTTTAATTTCTCTCTCTTTTCTTCTTCTTCCTCTTTCCTTTTCTTCTTCTTCTTCAAACCACCATCATCGCCACCGAAGTCGTCGTCCGTCGCCGTTTTCCATTGTCAGAATTAATTTTTTTTTTTAATCTTTTCATCTTCTTCTCTTTCCTTTTCCTTTCTTCTTCCATTTCTTCTTCTTCTTTCTTCCTATTTTCAGATTTGAAAATCAACAACCAAAGCCTTCTCTTTTTTCCCTATTTTGAGATCTGAAAATCAACACCTCCAACGCACGAGAACGCCATTGTTGCCGTCAAGCTGGAATCGAACGTTAGATCTGAAGCTCTTGAGTTCAGATCCGCGCGTGAGTTCAAATCTGATTCAGATTCGCGTCGTTCGTCGCTGAGTTCGTGAGTTCAGATCTGAAACTTGTGAGTTCAGATCCGACGACGTTAAGGACAGCTGCGAACCACCGGAGGTTGAAGGGAGAAGAAGACCCACACAAGTCACCGAAAAAATCGAGCCCCAACTCGCTGGACATCTATGCTCGAGTGAAGGACCCGCGTCGGAGAGATAACCGGGCTGGGCTCGTTGGAGAGATAATCGAAGAAGTTGCGGTCGACTTCACTATGCCTCGCCGGAGAGATAACCAAGCTGGCCTTCACGCAGAGAAATTGTTTGGGTCGCAGGCGGAAGAAATGAGATGGAGAGAGGGAGAGAGAAAGGAAAAAAAAAGGAAAAAAAAATCGGTGACAGGTGGTGGTTGTCGGCGGCGGTGACAGGTGGTGGTTGCCGGCGGCGGTGACTGGGCACAACTTGAAGAAGAAGAAGAAAGAGAAGAAGAAGAAAAAAAAAGAGATAATAAAAGAATAAAAAATACATTTTTTGATTAATTTAATATTATTTTTATTTTAAAAATTAACAAAATTATTTTTTAAAATAAAATAAAGGTGCCACGTCAGCAATCCGTTAGTTTTTAACGAAAAAATGGATGGAGGGACCAAAATGAAACTAAAACCAAACATCAGGGGCTAAATTGTTGAGTTTGAAAACTCAGGGGCCAAAATGAAACCTAACCCAAACCTCAGGGACTAAAAGTTTATTTTTCCCTAAAAATAAAGACAAATCCTCGCAAAAGAAGAACCATCAATTCAAGTCTCCTAAAGGGAAAATAGAGAAGGAGAAGTTCAAGCTGATATGTTATGTCTGCTGAAAACAAAGGCACAAATCCTATCAGTGCAACCAGAGGAAAGGGAAACCAAATCGGAAGCCTGCTGGTGCACAAGCCATCGTTGTTGAAGCAAACGACATCATTGCTACAGTGGTGGTGGAGGCTAACTTGGTAGAAAATAAATCAAACTGGATTCTTAAATCGACCTATTGCAATTTTGTGAGGAATTTTTTAGTGAGAATTGTGAGTGTTCATCTTGTGTATTTTGCCTTCCAAAGTTTTTTTTTTTTTTGTGAGATTCTTTTTCTTTTCAATCGAGAACTTGTAATGAGGTGTGAGTGCACCTTGCAAACGTAGTAAGTGGTTAATCTTGAACCCGAAAAATGATTTGTAGTGGTTTGATCCTGAGCCCGATTAAAATGATCGTAGTGGTTTGATCTTAAACCTCTTTAACTAGTGTAGGTTGGGTCATGAACCTCTAAAAAGATCGGTAGAGGTTTACTCTTGAACGTGGAAAAAAAGTGTTTGATCGGTTTGGTTCTCACCCGTAAGAGAGTTGTTGTAGTAAAATACCCAAGAAGGAGTCTTGGGGAATGGAGTAAGGATTTTTGAACCATTATAAAATTGTCTGGTGTTATCTCTTTCTACTCTTTTAAGTTTTCGCTATTTGATTATTTATATGAGTAGATTGTATGCTTAGATAAATTATATTATTCTATATTTCTAGCATATTTTGTAGTGTTTATTAAATTATTTTAGTTTAAATCAACTAAGGTTAATTTATCGAAAAATTAGTTTAAAATCTATACTATGTATACTATCTATATCTATACTATATATAAATCTATACTATATATAAAAGGGGCTAAGAGGGGAGAATCTTTACTTTCCTCTTTTGCCCTTACAATTTTAATAAATTCCTATTTTAACCTTCACTCTTTGTTGATAGGGTGTGACTCTTCGGGTCAAGGTGTCTGTTGAGAGAAATTTGTACAATCAAGGTAGTCATTCAAACATGACTATTCGAGTTATTGTATATATGAAAAGTGAACTTTAA

mRNA sequence

ATGGTTCTAACTACCGTCGTTGGTTTCAAAAACTGCTCATTTTCTTCGAACTCGGAGAAATCAAAAGCAGCACCTGTCATTGATCTGGAAAAGTCTAAGGAGGTCCAGCCTGATCCACACAGTTCTAAGGAGGTTCAAACAGTTCCTCAAAAATCAAAGGACGATGTTGACATTGATCCAGAAAAATTCGAGAAAGACAACAAGACGGTTCGTGGTCATCTTCTCAATCACATGAATGACTCGTTGTTCGACTTGTTCGTTGTTCACAAGTCATTTAAGGTGATCTGGGACACTCTGGAGTTGGTGGCGATGACATTCGCGTCGTTCGTCGCTGAGTTCGTGAGTTCAGATCTGAAACTTGTGAGTTCAGATCCGACGACGTTAAGGACAGCTGCGAACCACCGGAGGTTGAAGGGAGAAGAAGACCCACACAAGTCACCGAAAAAATCGAGCCCCAACTCGCTGGACATCTATGCTCGAGTGAAGGACCCGCGTCGGAGAGATAACCGGGCTGGGCTCGTTGGAGAGATAATCGAAGAAGTTGCGGTCGACTTCACTATGCCTCGCCGGAGAGATAACCAAGCTGGCCTTCACGCAGAGAAATTGTTTGGGCACAAATCCTATCAGTGCAACCAGAGGAAAGGGAAACCAAATCGGAAGCCTGCTGGTGCACAAGCCATCGTTGTTGAAGCAAACGACATCATTGCTACAGTGGTGGTGGAGGCTAACTTGGGTGTGACTCTTCGGGTCAAGGTGTCTGTTGAGAGAAATTTGTACAATCAAGGTAGTCATTCAAACATGACTATTCGAGTTATTGTATATATGAAAAGTGAACTTTAA

Coding sequence (CDS)

ATGGTTCTAACTACCGTCGTTGGTTTCAAAAACTGCTCATTTTCTTCGAACTCGGAGAAATCAAAAGCAGCACCTGTCATTGATCTGGAAAAGTCTAAGGAGGTCCAGCCTGATCCACACAGTTCTAAGGAGGTTCAAACAGTTCCTCAAAAATCAAAGGACGATGTTGACATTGATCCAGAAAAATTCGAGAAAGACAACAAGACGGTTCGTGGTCATCTTCTCAATCACATGAATGACTCGTTGTTCGACTTGTTCGTTGTTCACAAGTCATTTAAGGTGATCTGGGACACTCTGGAGTTGGTGGCGATGACATTCGCGTCGTTCGTCGCTGAGTTCGTGAGTTCAGATCTGAAACTTGTGAGTTCAGATCCGACGACGTTAAGGACAGCTGCGAACCACCGGAGGTTGAAGGGAGAAGAAGACCCACACAAGTCACCGAAAAAATCGAGCCCCAACTCGCTGGACATCTATGCTCGAGTGAAGGACCCGCGTCGGAGAGATAACCGGGCTGGGCTCGTTGGAGAGATAATCGAAGAAGTTGCGGTCGACTTCACTATGCCTCGCCGGAGAGATAACCAAGCTGGCCTTCACGCAGAGAAATTGTTTGGGCACAAATCCTATCAGTGCAACCAGAGGAAAGGGAAACCAAATCGGAAGCCTGCTGGTGCACAAGCCATCGTTGTTGAAGCAAACGACATCATTGCTACAGTGGTGGTGGAGGCTAACTTGGGTGTGACTCTTCGGGTCAAGGTGTCTGTTGAGAGAAATTTGTACAATCAAGGTAGTCATTCAAACATGACTATTCGAGTTATTGTATATATGAAAAGTGAACTTTAA

Protein sequence

MVLTTVVGFKNCSFSSNSEKSKAAPVIDLEKSKEVQPDPHSSKEVQTVPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDSLFDLFVVHKSFKVIWDTLELVAMTFASFVAEFVSSDLKLVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVKDPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEKLFGHKSYQCNQRKGKPNRKPAGAQAIVVEANDIIATVVVEANLGVTLRVKVSVERNLYNQGSHSNMTIRVIVYMKSEL

Homology

[Close]

BLAST of Lcy09g008730 vs. ExPASy TrEMBL
Match: A0A5D3CNJ2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold356G00110 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-17
Identity = 91/283 (32.16%), Postives = 122/283 (43.11%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLE-------------------LVAMT-----------FASFVA 144
           +FDLFVV KS K IW TLE                      MT           + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. ExPASy TrEMBL
Match: A0A5D3BZH6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001760 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-17
Identity = 91/283 (32.16%), Postives = 122/283 (43.11%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLE-------------------LVAMT-----------FASFVA 144
           +FDLFVV KS K IW TLE                      MT           + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-17
Identity = 91/283 (32.16%), Postives = 122/283 (43.11%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLE-------------------LVAMT-----------FASFVA 144
           +FDLFVV KS K IW TLE                      MT           + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. ExPASy TrEMBL
Match: A0A5D3C7Z8 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001160 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-17
Identity = 89/283 (31.45%), Postives = 120/283 (42.40%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTFDPPTTTSTSSDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLEL------------------------------VAMTFASFVA 144
           +FDLFVV KS K IW TLE                                   + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. ExPASy TrEMBL
Match: A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-17
Identity = 91/283 (32.16%), Postives = 121/283 (42.76%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTFDPPTTTSTSSDPESSTGPLTAIAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLE-------------------LVAMT-----------FASFVA 144
           +FDLFVV KS K IW TLE                      MT           + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   K  +  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLKLQELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. NCBI nr
Match: TYK11996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-17
Identity = 91/283 (32.16%), Postives = 122/283 (43.11%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLE-------------------LVAMT-----------FASFVA 144
           +FDLFVV KS K IW TLE                      MT           + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. NCBI nr
Match: TYK04957.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-17
Identity = 91/283 (32.16%), Postives = 122/283 (43.11%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLE-------------------LVAMT-----------FASFVA 144
           +FDLFVV KS K IW TLE                      MT           + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 9.0e-17
Identity = 91/283 (32.16%), Postives = 122/283 (43.11%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLE-------------------LVAMT-----------FASFVA 144
           +FDLFVV KS K IW TLE                      MT           + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. NCBI nr
Match: TYK07981.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-16
Identity = 89/283 (31.45%), Postives = 120/283 (42.40%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTFDPPTTTSTSSDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLEL------------------------------VAMTFASFVA 144
           +FDLFVV KS K IW TLE                                   + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

[Close]

BLAST of Lcy09g008730 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-16
Identity = 89/283 (31.45%), Postives = 120/283 (42.40%), Query Frame = 0


Query: 25  PVIDLEKSKEVQPDPHSSKEVQT---VPQKSKDDVDIDPEKFEKDNKTVRGHLLNHMNDS 84
           P  D   +     DP SS    T   V  + K D  IDPEK+ KDNKTVRGHLLNHM+D 
Sbjct: 49  PTSDPPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDP 108

Query: 85  LFDLFVVHKSFKVIWDTLEL------------------------------VAMTFASFVA 144
           +FDLFVV KS K IW TLE                                   + + VA
Sbjct: 109 MFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVA 168

Query: 145 EFVSSDLK---------LVSSDPTTLRTAANHRRLKGEEDPHKSPKKSSPNSLDIYARVK 204
             +S  +K         L+   P +     NH  LK ++   + P+  S    +   R+K
Sbjct: 169 NVLSEGMKMCEILQANVLLEKFPPSWNDYRNH--LKHKKKDLRLPELISHMRTEEANRLK 228

Query: 205 DPRRRDNRAGLVGEIIEEVAVDFTMPRRRDNQAGLHAEK--------------------- 245
           D     N   +   ++E   V+    ++     G ++EK                     
Sbjct: 229 DKLASQNLNSVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCG 288

The following BLAST results are available for this feature:

BLAST of Lcy09g008730 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g008730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CNJ2	4.4e-17	32.16	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZH6	4.4e-17	32.16	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T166	4.4e-17	32.16	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C7Z8	5.7e-17	31.45	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DSQ3	9.8e-17	32.16	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lcy09g008730 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11996.1	9.0e-17	32.16	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04957.1	9.0e-17	32.16	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	9.0e-17	32.16	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07981.1	1.2e-16	31.45	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	2.0e-16	31.45	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy09g008730 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g008730.1	Lcy09g008730.1	mRNA