Lcy09g008150 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g008150
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr09: 7523597 .. 7523908 (-)
RNA-Seq Expression	Lcy09g008150
Synteny	Lcy09g008150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATGGAAGTGATGTCTGTCTGATGTATTCTTCTGTTTTGAATTGGTTGGTCAGAATTGGATCGGCTCCATTCTTTTGGCCCTTGGTTGTGTTTTATGCCTACACCAGGGCCATTGCAAAGAAATACAAACAAGAAGAAGATGATGACGACGACAACAATGATGACGATGATTTAGGGCTGATTGGTCGGTTACCCCGCTGCCCCCCTGCTGCCCAATCAGACAAAATCAAATTGATGGCTGAGAAAAGACTGTTTGATCTTGATGTATGTCATGTCTCTGAGTTCCCCCAGCACACAAAATATTAA

mRNA sequence

ATGAAGAATGGAAGTGATGTCTGTCTGATGTATTCTTCTGTTTTGAATTGGTTGGTCAGAATTGGATCGGCTCCATTCTTTTGGCCCTTGGTTGTGTTTTATGCCTACACCAGGGCCATTGCAAAGAAATACAAACAAGAAGAAGATGATGACGACGACAACAATGATGACGATGATTTAGGGCTGATTGGTCGGTTACCCCGCTGCCCCCCTGCTGCCCAATCAGACAAAATCAAATTGATGGCTGAGAAAAGACTGTTTGATCTTGATGTATGTCATGTCTCTGAGTTCCCCCAGCACACAAAATATTAA

Coding sequence (CDS)

ATGAAGAATGGAAGTGATGTCTGTCTGATGTATTCTTCTGTTTTGAATTGGTTGGTCAGAATTGGATCGGCTCCATTCTTTTGGCCCTTGGTTGTGTTTTATGCCTACACCAGGGCCATTGCAAAGAAATACAAACAAGAAGAAGATGATGACGACGACAACAATGATGACGATGATTTAGGGCTGATTGGTCGGTTACCCCGCTGCCCCCCTGCTGCCCAATCAGACAAAATCAAATTGATGGCTGAGAAAAGACTGTTTGATCTTGATGTATGTCATGTCTCTGAGTTCCCCCAGCACACAAAATATTAA

Protein sequence

MKNGSDVCLMYSSVLNWLVRIGSAPFFWPLVVFYAYTRAIAKKYKQEEDDDDDNNDDDDLGLIGRLPRCPPAAQSDKIKLMAEKRLFDLDVCHVSEFPQHTKY

Homology

[Close]

BLAST of Lcy09g008150 vs. NCBI nr
Match: KAG7032611.1 (hypothetical protein SDJN02_06661 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18
Identity = 51/76 (67.11%), Postives = 61/76 (80.26%), Query Frame = 0


Query: 28  WPLVVFYAYTRAIAKKYKQEEDDDDDNNDDDDLGLIGRLPRCPPAAQSDKIKLMAEKRLF 87
           WPLVVFYA TRAIA+KY+  E+DDDDN  DDD+ +IGR  RC  AAQS+ I+LMAEKR+F
Sbjct: 245 WPLVVFYASTRAIARKYEHGEEDDDDN--DDDVEVIGRGNRCLAAAQSNGIELMAEKRVF 304

Query: 88  DLDVCHVSEFPQHTKY 104
           D+DVCHV E  QH +Y
Sbjct: 305 DIDVCHVCELLQHREY 318

[Close]

BLAST of Lcy09g008150 vs. NCBI nr
Match: KAG6601917.1 (hypothetical protein SDJN03_07150, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-13
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 37  TRAIAKKYKQEEDDDDDNNDDDDLGLIGRLPRCPPAAQSDKIKLMAEKRLFDLDVCHVSE 96
           TRAIA+KY+  E+DDDDN  DDD+ +IGR  RC  AAQS+ I+LMAEKR+FD+DVCHV E
Sbjct: 289 TRAIARKYEHGEEDDDDN--DDDVEVIGRGNRCLAAAQSNGIELMAEKRVFDIDVCHVCE 348

Query: 97  FPQHTKY 104
             QH +Y
Sbjct: 349 LLQHREY 353

The following BLAST results are available for this feature:

BLAST of Lcy09g008150 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g008150 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g008150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032611.1	1.0e-18	67.11	hypothetical protein SDJN02_06661 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601917.1	1.7e-13	64.18	hypothetical protein SDJN03_07150, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy09g008150 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g008150.1	Lcy09g008150.1	mRNA