Lcy09g007050 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g007050
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Chorismate synthase, chloroplastic
Location	Chr09: 6332724 .. 6334253 (+)
RNA-Seq Expression	Lcy09g007050
Synteny	Lcy09g007050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATTATTTAGCAAATGCATCTGAAGATTTTAGGAAATCCTTCGAGGATTTGGTTAGAGCGTACCGCACTTTCAAACAACTGTTAGGAGCCGTTCAGTTTGCTGATGATATAATGAATGCCGAGATCCAAATAATTCCTGGACTCGGAATACGCATAAATAATCCAGAAACCCGAGATGATCAGAACCGCACCCACGTCCGAAATCCTGGCGAAACTTCTGGAACAGATCCACAAAACCAAGATGACCAGAACCGCACCCACGTCCGAAATCCTGGCGAAACTTCTGGAACAGATCCACAAAACCAAGATGACCAGAACCGCACCTACGTCATTCCTGGAATACGCATTAACCTGAACCGCCCCCGCGTCCTATTTCCTGGCGAAACTTCTAGAACACGCCGCATTAATAATCCGGAAACCCGAGGCCGCAGATTGCGAAGCCATTCTATTAATCTTCCAGTAAGGAGAGAATCACGGAAACGACCACGGGAATACTGATCTAAAATTTAGGGTTCTTTGGGAAAGATAATTGGATCTGAGGAATATATTTGTTTCTGTTTCTGATAAAAAAGAAAAGAAGAAGAAGATTGTTCACTTTTAATAGGCCATTAGGTTGTTCAATACGCATCAATGAAACTCTTTTAAATCGTTTCCTGGTATTTACAATGGCTCTTTCGTTAATTGTTATATCATTATTCTCTCGTTAAAAGATCCTGGTATTACATGAATTATACGGTTAAAAATAAATTATCTGCTGCCGACTTGATCATAAATTATATCGACAAGAAAGTCCGATTTGTTATTGTCATGTCTTTAGGTACTTGCCTATGTATCTCAAGTCTACAAGGTTGTACTGGCAGAGGGTTTGGTTGATCATGAAACTCTGTTAATGGAGCAGGTAAGCTAGAGATGCAGAAAGTTAAAATGTTTGTTCTCTAAAATATTCTAAGACATATAGTTGCTATATTGTGTGTCATGAATTTTAATGCAAGAATCTGATGCTACTTGCAACCTCCGATATTAAAAATGACTAAATCATTTTTAATGGACTTTAGTTACTTTAAATAATGTTAACAAATTTTTTTTCTGGAAAAAAAAATACTATTTATTTTTTTGATAGTTACTTTAAATAATGTCATGATTTGACTGTAAGGTATTTCAAATGGACTTTTCGAATAAGGTGATTTTGGCCATTCCAAAATCATTCCCAAATGCGCCTAAGTCAAACAGTTGAATGTGTAAACTGTAAGTTTAAACTAAAAAAGTGGAGAAATGTTGGCCACAAAATTTATTAGGTTCTTTTATTGAATGAAATCTTTGTGGGTTCAGTCAAAGAGTGCAAAGCCAACAATCTTGTTTAATGATCTTGATGATCCCTAAACAATGATTGATAAGGTGTACAAGACTGTTTGGTTCTCAGGAAATGCAGGGAAGGAAATAAAAAAGATAAAAGCTATGGTAAATTTCAAATTCTGGGAGTATTATTATAATCTAGAGAAGAAACTTGTTGCTGTTGGTGTGTGA

mRNA sequence

ATGATGAATTATTTAGCAAATGCATCTGAAGATTTTAGGAAATCCTTCGAGGATTTGGTTAGAGCGTACCGCACTTTCAAACAACTGTTAGGAGCCGTTCAGTTTGCTGATGATATAATGAATGCCGAGATCCAAATAATTCCTGGACTCGGAATACGCATAAATAATCCAGAAACCCGAGATGATCAGAACCGCACCCACGTCCGAAATCCTGGCGAAACTTCTGGAACAGATCCACAAAACCAAGATGACCAGAACCGCACCCACGTCCGAAATCCTGGCGAAACTTCTGGAACAGATCCACAAAACCAAGATGACCAGAACCGCACCTACGTCATTCCTGGAATACGCATTAACCTGAACCGCCCCCGCGTCCTATTTCCTGGCGAAACTTCTAGAACACGCCGCATTAATAATCCGGAAACCCGAGGCCGCAGATTGCGAAGCCATTCTATTAATCTTCCAGTACTTGCCTATGTATCTCAAGTCTACAAGGTTGTACTGGCAGAGGGTTTGGTTGATCATGAAACTCTGTTAATGGAGCAGGTGTACAAGACTGTTTGGTTCTCAGGAAATGCAGGGAAGGAAATAAAAAAGATAAAAGCTATGGTAAATTTCAAATTCTGGGAGTATTATTATAATCTAGAGAAGAAACTTGTTGCTGTTGGTGTGTGA

Coding sequence (CDS)

ATGATGAATTATTTAGCAAATGCATCTGAAGATTTTAGGAAATCCTTCGAGGATTTGGTTAGAGCGTACCGCACTTTCAAACAACTGTTAGGAGCCGTTCAGTTTGCTGATGATATAATGAATGCCGAGATCCAAATAATTCCTGGACTCGGAATACGCATAAATAATCCAGAAACCCGAGATGATCAGAACCGCACCCACGTCCGAAATCCTGGCGAAACTTCTGGAACAGATCCACAAAACCAAGATGACCAGAACCGCACCCACGTCCGAAATCCTGGCGAAACTTCTGGAACAGATCCACAAAACCAAGATGACCAGAACCGCACCTACGTCATTCCTGGAATACGCATTAACCTGAACCGCCCCCGCGTCCTATTTCCTGGCGAAACTTCTAGAACACGCCGCATTAATAATCCGGAAACCCGAGGCCGCAGATTGCGAAGCCATTCTATTAATCTTCCAGTACTTGCCTATGTATCTCAAGTCTACAAGGTTGTACTGGCAGAGGGTTTGGTTGATCATGAAACTCTGTTAATGGAGCAGGTGTACAAGACTGTTTGGTTCTCAGGAAATGCAGGGAAGGAAATAAAAAAGATAAAAGCTATGGTAAATTTCAAATTCTGGGAGTATTATTATAATCTAGAGAAGAAACTTGTTGCTGTTGGTGTGTGA

Protein sequence

MMNYLANASEDFRKSFEDLVRAYRTFKQLLGAVQFADDIMNAEIQIIPGLGIRINNPETRDDQNRTHVRNPGETSGTDPQNQDDQNRTHVRNPGETSGTDPQNQDDQNRTYVIPGIRINLNRPRVLFPGETSRTRRINNPETRGRRLRSHSINLPVLAYVSQVYKVVLAEGLVDHETLLMEQVYKTVWFSGNAGKEIKKIKAMVNFKFWEYYYNLEKKLVAVGV

Homology

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BLAST of Lcy09g007050 vs. ExPASy Swiss-Prot
Match: P27793 (Chorismate synthase, chloroplastic OS=Capnoides sempervirens OX=3464 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.3e-04
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 156 VLAYVSQVYKVVLAEGLVDHETLLMEQVYKTV 188
           VLAYVSQ +KVVL EGLVDHETL +EQ+   +
Sbjct: 210 VLAYVSQAHKVVLPEGLVDHETLSLEQIESNI 241

The following BLAST results are available for this feature:

BLAST of Lcy09g007050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27793	4.3e-04	68.75	Chorismate synthase, chloroplastic OS=Capnoides sempervirens OX=3464 PE=1 SV=1	[more]

BLAST of Lcy09g007050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lcy09g007050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lcy09g007050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g007050.1	Lcy09g007050.1	mRNA