Lcy09g005960 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g005960
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionProtein phosphatase methylesterase 1
LocationChr09: 5184938 .. 5187537 (+)
RNA-Seq ExpressionLcy09g005960
SyntenyLcy09g005960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTGCTGTTTCAATTTTCAAATTCATTGCGGCATTGCGCAATTCAGAAGCCAGGTGATTTGCTTTTTTGGTTAGCTATGAGTTATTGGAATGGTGCTTTTCTTCTGTTGTTTCAGTGAAGTTTCTTGTGCTTAGGTGTGGATCACTTGAATATTAATCGCTTCCAAGCCTGATCGCCCTCCGATTCTGTAAGTTCTCAAATTCCCTTTACGCACCCCCATGTTGCCGCACTTTGTTTTGTTTTTTAGAATATCTGCATGGACTACCTAACCTTTCGTTTCTACTGAATTGTTTAGTATTGAATCGAGAGATCTGTTAATGTATTGACATGCATTCTTTTTCTTGATTGAAGCTCCTTAATTTGAATTCTTTTAACTCCTTGAAGCCCAAAGCATTATTTGTTTTCCTTTCTTTCAGGGGGGATGATGGGAAGTGTATTCTTTATGGGGAGTTGATATTGGGATTAAAATCATTCTTGGTTGGATATGTGATCGTTGTATTCACACCATGGTGAGTGCATGGAGCATCTTTTGACTGATTTACAGAAAGAAGTTTCTGGTTATAATATGGGAAGAAATAGCAGCAGAAAGTTTTTTAACCAAAAAAAAAAATAAATAATAATAATAATAAAGAATATATTTGGAATGAATTTGATAGAAAGAAGCTGAAATGTTATTGTACCAGTCAGAGTGTCAGTAGGTTTGTTCTTTACTGTTTTTTTATGTGAATGCATGAAGCTCGTGTTGAGCTGAGTGCTTTTTTGGTGTAAAGATAATATGTAGTTTTATTATGGCGTTTGGATTTAGTTTTTGATTCTATGTTGTCTTGAAGGAATTCTTCACAGAAGTACTTGCCCATAGATTGGCTTGGATATTTCGACCAAGAGGATGATATTTCCATTCCAAACTCGAATGATGTTAGTATTAATTTGCATCTTTCTCTCACATACTCAAGACTGCACACACTCAGGCAAACCCAAACACATACAAACACTTGTATACAAGTATACATGCAAACATAGGAGTAAGTTTTCAGGGATTTGTTCTTTTTCGTTTAACGTGCATTATCTTTTTAGGTTTTTCATGTATATTCGGCAGGAAAAGAAGGACCAGTTGTATTTTGTCTACACAGAGGAGGCTATTCTGGGTGTGTGATTATTCCTCTCTTTGTCCTATAATTTAAAGTATCTTCACTCTGTGGATCGTTAGATCTACACTTTACTCTTATTTTAGCCATTAAATGATGTTGATAGTTTTAACTTGAGACTTTAGACCCATGTTCCTAGGGATGTCCGAGAGTGATTTGAACCATTCAATTTAACCATGACAAAAATCACTTACACTTAATGGTTATGTTTGGATAGAAGCATTTTTCAATAAAGTTAAGCACTTAGGCTTTTGACATATGTTAGCTTCAGTCATGTCTTTTATGTGGGTTTCCTAATTTTTTGAAATCTAGTTTTCTGTGTTTCGATGTATCTCTTTTCCATATTTCCAGGGATATGCATGTCATATGTACTGTACCAGTTAATTATGTCCATATTTAATGTATTTTTGCCTTTTGTTTTCAGTATTCCTTTACACATTTCTGGCAATAATTTGCATTGCATCTGTAATTTAATTCTCACTTGGCTCATTGTCAAAATACATTTCACTAGGTTTTCTTTTGCTCTATCAGCTGGTATAATAAAGGAAAAGGCTAGAGTAGTTGCAATGGACTTCAGAGGACATGGAGAATCATCTTCTGAGAATGATTTTGACTTATCGATTGAGGTACTGATATGCTAATTAAATGATTGTTCAGCTATCTTTAGTTCGTAAGTTTTCTACTGTGCTGGGAACTTGTTAGCCATTTACGAAGTGTTTTATTACATTTGCAGACTATGTGCAATGATGTTTTGGCAGTTATAAAGACCATGTTTGGAGATTCACCTCCTGCAATTGTGCTTGTTGGTCACAGGTAGTGTATCTTTTAGTTAGCTAGTTTTGTCACTTTAAAAATAAGTACAAATAAGACTAGAAACAAAAAAAATAAAAAAATAAAAATTATGGCTAGGATGAAAGTGTACAGAACGACCCAAAAGTCTAAGAGCTTATAAGAAACTGCCCCAAAATCTTGGATTGTTGCAAAAGGGCTATAGTTACATAAGAGTCTGAGAGCGAGCACAGGATGAAGCATGGATGATGGAATCTACCTTGAACCTCGATCATTTACCAATCTCTACTTTCATTAAAACTCTTTGATTGCTTCATAACCAAATCTTCCGAAGGTTGACTTTTATAGCATTGGACCAGAAGACGCCTCCCTTGAAAAGGTAGAAGGTGCTCTAAACAATCTGCGAATGTACTCACTCATCCCAAAAAAGAAAAAAGAACAACCTGTTAATGTATTACGAAGAGCTCATTTAGTGTCAAATTCTTTGAAGAGGGAGTTCCACAAATTTTGGCTGTAGGGTAAATGATCAAACTCATGGAATGTTCACACATAATATTTCGAAAAGCAGCTAGTGCTAAGCTTGCGCCTGATGTTCCAAACAATGTCTAGATAACCTAACATTGCGTTTTGTTTATTGTTTTTTTTCTTGCAGCATGTTGTAA

mRNA sequence

ATGATCTGCTGTTTCAATTTTCAAATTCATTGCGGCATTGCGCAATTCAGAAGCCAGTTATTGGAATGGTGCTTTTCTTCTGTTGTTTCAGTGAAGTTTCTTGTGCTTAGGGGGGATGATGGGAAGTGTATTCTTTATGGGGAGTTGATATTGGGATTAAAATCATTCTTGGTTGGATATGTGATCGTTGTATTCACACCATGGAATTCTTCACAGAAGTACTTGCCCATAGATTGGCTTGGATATTTCGACCAAGAGGATGATATTTCCATTCCAAACTCGAATGATACTATGTGCAATGATGTTTTGGCAGTTATAAAGACCATGTTTGGAGATTCACCTCCTGCAATTGTGCTTGTTGGTCACAGCATGTTGTAA

Coding sequence (CDS)

ATGATCTGCTGTTTCAATTTTCAAATTCATTGCGGCATTGCGCAATTCAGAAGCCAGTTATTGGAATGGTGCTTTTCTTCTGTTGTTTCAGTGAAGTTTCTTGTGCTTAGGGGGGATGATGGGAAGTGTATTCTTTATGGGGAGTTGATATTGGGATTAAAATCATTCTTGGTTGGATATGTGATCGTTGTATTCACACCATGGAATTCTTCACAGAAGTACTTGCCCATAGATTGGCTTGGATATTTCGACCAAGAGGATGATATTTCCATTCCAAACTCGAATGATACTATGTGCAATGATGTTTTGGCAGTTATAAAGACCATGTTTGGAGATTCACCTCCTGCAATTGTGCTTGTTGGTCACAGCATGTTGTAA

Protein sequence

MICCFNFQIHCGIAQFRSQLLEWCFSSVVSVKFLVLRGDDGKCILYGELILGLKSFLVGYVIVVFTPWNSSQKYLPIDWLGYFDQEDDISIPNSNDTMCNDVLAVIKTMFGDSPPAIVLVGHSML
Homology
[Close]
BLAST of Lcy09g005960 vs. ExPASy TrEMBL
Match: A0A7J7GN81 (Protein phosphatase methylesterase 1 OS=Camellia sinensis OX=4442 GN=HYC85_019792 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 46/88 (52.27%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 70  SSQKYLPIDWLGYFDQEDDISIPNSND--------------------------------- 125
           SSQKY P+DWLGYFDQEDDI IP+SND                                 
Sbjct: 44  SSQKYSPLDWLGYFDQEDDIHIPDSNDVFHIYKAGSDGPAMDLRGHGKSSTENELDLSIE 103

[Close]
BLAST of Lcy09g005960 vs. ExPASy TrEMBL
Match: A0A6J1I7S5 (Protein phosphatase methylesterase 1 OS=Cucurbita maxima OX=3661 GN=LOC111472065 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 53/118 (44.92%), Postives = 56/118 (47.46%), Query Frame = 0 

Query: 69  NSSQKYLPIDWLGYFDQEDDISIPNSN--------------------------------- 125
           NSSQKYLP+DWLGYFDQE+DISIPNSN                                 
Sbjct: 41  NSSQKYLPLDWLGYFDQEEDISIPNSNEVFHVYTAGKEGPVVFCLHGGGYSGLSFALSAG 100

[Close]
BLAST of Lcy09g005960 vs. ExPASy TrEMBL
Match: A0A6J1I8X2 (Protein phosphatase methylesterase 1 OS=Cucurbita maxima OX=3661 GN=LOC111472065 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 53/118 (44.92%), Postives = 56/118 (47.46%), Query Frame = 0 

Query: 69  NSSQKYLPIDWLGYFDQEDDISIPNSN--------------------------------- 125
           NSSQKYLP+DWLGYFDQE+DISIPNSN                                 
Sbjct: 41  NSSQKYLPLDWLGYFDQEEDISIPNSNEVFHVYTAGKEGPVVFCLHGGGYSGLSFALSAG 100

[Close]
BLAST of Lcy09g005960 vs. ExPASy TrEMBL
Match: A0A6J1EBY6 (Protein phosphatase methylesterase 1 OS=Cucurbita moschata OX=3662 GN=LOC111432673 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 53/118 (44.92%), Postives = 56/118 (47.46%), Query Frame = 0 

Query: 69  NSSQKYLPIDWLGYFDQEDDISIPNSN--------------------------------- 125
           NSSQKYLP+DWLGYFDQE+DISIPNSN                                 
Sbjct: 41  NSSQKYLPLDWLGYFDQEEDISIPNSNEVFHVYTAGKEGPVVFCLHGGGYSGLSFALSAG 100

[Close]
BLAST of Lcy09g005960 vs. ExPASy TrEMBL
Match: A0A0A0KSW0 (Protein phosphatase methylesterase 1 OS=Cucumis sativus OX=3659 GN=Csa_5G649860 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 51/118 (43.22%), Postives = 55/118 (46.61%), Query Frame = 0 

Query: 69  NSSQKYLPIDWLGYFDQEDDISIPNSN--------------------------------- 125
           N S+KYLP+DWLGYFDQEDDISIPNSN                                 
Sbjct: 41  NVSEKYLPLDWLGYFDQEDDISIPNSNEVFHVYMAGKEGPVVFCLHGGGYSGLSFALSAG 100

[Close]
BLAST of Lcy09g005960 vs. NCBI nr
Match: XP_011006192.1 (PREDICTED: protein phosphatase methylesterase 1-like [Populus euphratica])

HSP 1 Score: 91.3 bits (225), Expect = 6.5e-15
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 0 

Query: 66  TPWNSSQKYLPIDWLGYFDQEDDISIPNSNDTMCNDVLAVIKTMFGDSPPAIVLVGHSM 125
           TP N  +KY P++W G FD+E+D+ IP+SND MCND  AV+K M+GDSPPA VLVGHSM
Sbjct: 6   TPINVQEKYAPLEWTGLFDEEEDVCIPDSNDAMCNDFSAVMKAMYGDSPPATVLVGHSM 64

[Close]
BLAST of Lcy09g005960 vs. NCBI nr
Match: KAF5942150.1 (hypothetical protein HYC85_019792 [Camellia sinensis])

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-14
Identity = 46/88 (52.27%), Postives = 52/88 (59.09%), Query Frame = 0 

Query: 70  SSQKYLPIDWLGYFDQEDDISIPNSND--------------------------------- 125
           SSQKY P+DWLGYFDQEDDI IP+SND                                 
Sbjct: 44  SSQKYSPLDWLGYFDQEDDIHIPDSNDVFHIYKAGSDGPAMDLRGHGKSSTENELDLSIE 103

[Close]
BLAST of Lcy09g005960 vs. NCBI nr
Match: KAG6592359.1 (Protein phosphatase methylesterase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14
Identity = 53/118 (44.92%), Postives = 56/118 (47.46%), Query Frame = 0 

Query: 69  NSSQKYLPIDWLGYFDQEDDISIPNSN--------------------------------- 125
           NSSQKYLP+DWLGYFDQE+DISIPNSN                                 
Sbjct: 41  NSSQKYLPLDWLGYFDQEEDISIPNSNEVFHVYTAGKEGPVVFCLHGGGYSGLSFALSAG 100

[Close]
BLAST of Lcy09g005960 vs. NCBI nr
Match: XP_022973537.1 (protein phosphatase methylesterase 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14
Identity = 53/118 (44.92%), Postives = 56/118 (47.46%), Query Frame = 0 

Query: 69  NSSQKYLPIDWLGYFDQEDDISIPNSN--------------------------------- 125
           NSSQKYLP+DWLGYFDQE+DISIPNSN                                 
Sbjct: 41  NSSQKYLPLDWLGYFDQEEDISIPNSNEVFHVYTAGKEGPVVFCLHGGGYSGLSFALSAG 100

[Close]
BLAST of Lcy09g005960 vs. NCBI nr
Match: XP_023535503.1 (protein phosphatase methylesterase 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-14
Identity = 53/118 (44.92%), Postives = 56/118 (47.46%), Query Frame = 0 

Query: 69  NSSQKYLPIDWLGYFDQEDDISIPNSN--------------------------------- 125
           NSSQKYLP+DWLGYFDQE+DISIPNSN                                 
Sbjct: 41  NSSQKYLPLDWLGYFDQEEDISIPNSNEVFHVYTAGKEGPVVFCLHGGGYSGLSFALSAG 100

[Close]
BLAST of Lcy09g005960 vs. TAIR 10
Match: AT4G10050.1 (esterase/lipase/thioesterase family protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-11
Identity = 42/118 (35.59%), Postives = 49/118 (41.53%), Query Frame = 0 

Query: 69  NSSQKYLPIDWLGYFDQEDDISIPNSND-------------------------------- 125
           NSS+KY P++W  YFD+EDDISI  S+D                                
Sbjct: 40  NSSEKYSPVEWKSYFDKEDDISITGSDDVFHVYMAGNEGPVVFCLHGGGYSGLSFSIVAS 99

The following BLAST results are available for this feature:
BLAST of Lcy09g005960 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g005960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J7GN811.2e-1452.27Protein phosphatase methylesterase 1 OS=Camellia sinensis OX=4442 GN=HYC85_01979... [more]
A0A6J1I7S51.6e-1444.92Protein phosphatase methylesterase 1 OS=Cucurbita maxima OX=3661 GN=LOC111472065... [more]
A0A6J1I8X21.6e-1444.92Protein phosphatase methylesterase 1 OS=Cucurbita maxima OX=3661 GN=LOC111472065... [more]
A0A6J1EBY61.6e-1444.92Protein phosphatase methylesterase 1 OS=Cucurbita moschata OX=3662 GN=LOC1114326... [more]
A0A0A0KSW01.3e-1343.22Protein phosphatase methylesterase 1 OS=Cucumis sativus OX=3659 GN=Csa_5G649860 ... [more]
BLAST of Lcy09g005960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011006192.16.5e-1564.41PREDICTED: protein phosphatase methylesterase 1-like [Populus euphratica][more]
KAF5942150.12.5e-1452.27hypothetical protein HYC85_019792 [Camellia sinensis][more]
KAG6592359.13.2e-1444.92Protein phosphatase methylesterase 1, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_022973537.13.2e-1444.92protein phosphatase methylesterase 1 isoform X2 [Cucurbita maxima][more]
XP_023535503.13.2e-1444.92protein phosphatase methylesterase 1 [Cucurbita pepo subsp. pepo][more]
BLAST of Lcy09g005960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10050.13.5e-1135.59esterase/lipase/thioesterase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g005960.1Lcy09g005960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity