Lcy09g005830 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g005830
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	60S ribosomal protein L35
Location	Chr09: 5117295 .. 5118531 (+)
RNA-Seq Expression	Lcy09g005830
Synteny	Lcy09g005830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAAATTCTAAATCAAATCTTATCATTATCGAAATCTGACATTCTCCATCCGGATTTCGGCTCAGGAAAACGATGAAATTTTTGTTATTCGATTTGATGTTTTTGATTTTCAGCGAGGATCAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCGGATCTGTTGTTGCAGCTTAAGGATCTTAAGGCGGAGCTTGCTCTCCTTCGAGTTGCTAAAGTCACTGGCGGTGCCCCAAACAAACTATCCAAAATGTAATTCCCTTTCCTTCGAGTCCTTTTTTTTCCCTTTTCCATAATCCATCTCATTGTTTTGTTGACCTTGTTCTTCTTGATGGTTTATTTTGCAGCAAGGTAGTGAGATTGTCGATCGCTCAAGTCTTGACAGTAATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGCCCTAAGAAGACCAGGGCCATCCGTAGAAGGCTAACCAAGCACCAGGTAACTTATTCGTCTTAATTTCTAAATCTTGTGATTTCATGTGTATCTCGCAATACACTTTTTGGCCCCAAGCATAATGTATTCTGTTCCTTAATGTACAATGAATGCATACAATACTTTATGCAAAGCTACTTGTTGGCCGTTTGGTTTTTCAAGGTTGGTTCCAATGAGGAATAGGAAATCATGTTTGAATTTCATGAATAGAGAATGACTTTGTTAGTTTTACAACCTTGATACCTACTGTTGAAGTTGGTATTTAAAATATTTAGAATTAGTTAGTTACATGATCTCTGTTCTAATTCATTGAATTTAACGAATTAATTTTAATGGGGAGAATTTACATTTTAATCATTCAGTTTAATAATATCAATTGGTTTAAATAAACCCTTCTTATGTGAGAAACTTCTCGTCTTCAAGTAATCATCTGCCTGGTGTTTTTTCTACTGCTGTGATATTCCTTTAATGTGTGATGTCTAGAGTAGTGGGTTAGGCTCGATACCAGCAGATATATAAATGAAAAACTTTTCCTCATTCATTTCCTAATCATTGTCATTGTCATTGATGCAACTGTAATGCTGTTAACTGGTTGGTAATCCATTTCTTTTTCTTTAGTTTGCTTTCGACCATTTTGTTGAATGAATCAACTTTCTCATGCAGGCATCTTTGAAAACCGAGCGACAGAAGAAGAAAGAGATGTACTATCCATTGAGGAAATATGCCATTAAGGTGTAG

mRNA sequence

ATGGCGAGGATCAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCGGATCTGTTGTTGCAGCTTAAGGATCTTAAGGCGGAGCTTGCTCTCCTTCGAGTTGCTAAAGTCACTGGCGGTGCCCCAAACAAACTATCCAAAATCAAGGTAGTGAGATTGTCGATCGCTCAAGTCTTGACAGTAATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGCCCTAAGAAGACCAGGGCCATCCGTAGAAGGCTAACCAAGCACCAGGCATCTTTGAAAACCGAGCGACAGAAGAAGAAAGAGATGTACTATCCATTGAGGAAATATGCCATTAAGGTGTAG

Coding sequence (CDS)

ATGGCGAGGATCAAGGTTCACGAGTTGAGGCAGAAATCGAAGGCGGATCTGTTGTTGCAGCTTAAGGATCTTAAGGCGGAGCTTGCTCTCCTTCGAGTTGCTAAAGTCACTGGCGGTGCCCCAAACAAACTATCCAAAATCAAGGTAGTGAGATTGTCGATCGCTCAAGTCTTGACAGTAATTTCCCAGAAGCAGAAGGCGGCATTGAGGGAAGCTTACAAGAAGAAGAAGCTTTTGCCTCTCGATCTGCGCCCTAAGAAGACCAGGGCCATCCGTAGAAGGCTAACCAAGCACCAGGCATCTTTGAAAACCGAGCGACAGAAGAAGAAAGAGATGTACTATCCATTGAGGAAATATGCCATTAAGGTGTAG

Protein sequence

MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYAIKV

Homology

[Close]

BLAST of Lcy09g005830 vs. ExPASy Swiss-Prot
Match: Q9M5L0 (60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 9.8e-51
Identity = 113/123 (91.87%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQK+KA+LL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQK ALREAYK KK LPLDLRPKKTRAIRRRLTKHQ SLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKLALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQQSLKTEREKKKEMYFPMRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy Swiss-Prot
Match: O80626 (60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.9e-50
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy Swiss-Prot
Match: Q9SF53 (60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-49
Identity = 111/123 (90.24%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy Swiss-Prot
Match: Q9LZ41 (60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-49
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy Swiss-Prot
Match: Q9M3D2 (60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-48
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL  QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy TrEMBL
Match: A0A0A0KQT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505200 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.2e-52
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLLQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy TrEMBL
Match: A0A6J1CDN9 (60S ribosomal protein L35-2 OS=Momordica charantia OX=3673 GN=LOC111010277 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.1e-52
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLGQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy TrEMBL
Match: A0A0A0KLK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G178720 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.4e-52
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy TrEMBL
Match: A0A6J1BZV3 (60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.4e-52
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. ExPASy TrEMBL
Match: A0A1S3CJH2 (60S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103501660 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.0e-52
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLLQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKE+Y+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKELYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. NCBI nr
Match: XP_004149815.1 (60S ribosomal protein L35 [Cucumis sativus] >KGN51259.1 hypothetical protein Csa_008929 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 6.5e-52
Identity = 121/123 (98.37%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLLQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. NCBI nr
Match: XP_022139337.1 (60S ribosomal protein L35-2 [Momordica charantia])

HSP 1 Score: 213.8 bits (543), Expect = 8.5e-52
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLGQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. NCBI nr
Match: XP_022134532.1 (60S ribosomal protein L35 [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLTQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMY+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. NCBI nr
Match: XP_004150961.1 (60S ribosomal protein L35 [Cucumis sativus] >KGN50505.1 hypothetical protein Csa_000675 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSK DLL QLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKGDLLAQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. NCBI nr
Match: XP_008463526.1 (PREDICTED: 60S ribosomal protein L35 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 120/123 (97.56%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELRQKSKADLLLQLKDLKAEL+LLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV
Sbjct: 1   MARIKVHELRQKSKADLLLQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKE+Y+PLRKYA
Sbjct: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKELYFPLRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. TAIR 10
Match: AT2G39390.1 (Ribosomal L29 family protein )

HSP 1 Score: 198.4 bits (503), Expect = 3.4e-51
Identity = 112/123 (91.06%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSKADL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKADLSGQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. TAIR 10
Match: AT3G09500.1 (Ribosomal L29 family protein )

HSP 1 Score: 196.8 bits (499), Expect = 1.0e-50
Identity = 111/123 (90.24%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR+KSK+DL  QLK+LKAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELREKSKSDLQNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. TAIR 10
Match: AT5G02610.1 (Ribosomal L29 family protein )

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-50
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK DL  QLK+ KAELALLRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKTDLQNQLKEFKAELALLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
           ISQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKKEMY+P+RKYA
Sbjct: 61  ISQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEMYFPVRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. TAIR 10
Match: AT3G55170.1 (Ribosomal L29 family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-49
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL  QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

[Close]

BLAST of Lcy09g005830 vs. TAIR 10
Match: AT3G55170.2 (Ribosomal L29 family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-49
Identity = 109/123 (88.62%), Postives = 116/123 (94.31%), Query Frame = 0


Query: 1   MARIKVHELRQKSKADLLLQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTV 60
           MARIKVHELR KSK+DL  QLK+LKAELA LRVAKVTGGAPNKLSKIKVVR SIAQVLTV
Sbjct: 1   MARIKVHELRDKSKSDLSTQLKELKAELASLRVAKVTGGAPNKLSKIKVVRKSIAQVLTV 60

Query: 61  ISQKQKAALREAYKKKKLLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKEMYYPLRKYA 120
            SQKQK+ALREAYK KKLLPLDLRPKKTRAIRRRLTKHQASLKTER+KKK+MY+P+RKYA
Sbjct: 61  SSQKQKSALREAYKNKKLLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKDMYFPIRKYA 120

Query: 121 IKV 124
           IKV
Sbjct: 121 IKV 123

The following BLAST results are available for this feature:

BLAST of Lcy09g005830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5L0	9.8e-51	91.87	60S ribosomal protein L35 OS=Euphorbia esula OX=3993 GN=RPL35 PE=2 SV=1	[more]
O80626	4.9e-50	91.06	60S ribosomal protein L35-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1	[more]
Q9SF53	1.4e-49	90.24	60S ribosomal protein L35-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1	[more]
Q9LZ41	2.4e-49	90.24	60S ribosomal protein L35-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35D PE=2 SV=1	[more]
Q9M3D2	1.6e-48	88.62	60S ribosomal protein L35-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1	[more]

BLAST of Lcy09g005830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQT2	3.2e-52	98.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505200 PE=3 SV=1	[more]
A0A6J1CDN9	4.1e-52	99.19	60S ribosomal protein L35-2 OS=Momordica charantia OX=3673 GN=LOC111010277 PE=3 ...	[more]
A0A0A0KLK6	5.4e-52	98.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G178720 PE=3 SV=1	[more]
A0A6J1BZV3	5.4e-52	98.37	60S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111006751 PE=3 SV...	[more]
A0A1S3CJH2	7.0e-52	97.56	60S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103501660 PE=3 SV=1	[more]

BLAST of Lcy09g005830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149815.1	6.5e-52	98.37	60S ribosomal protein L35 [Cucumis sativus] >KGN51259.1 hypothetical protein Csa...	[more]
XP_022139337.1	8.5e-52	99.19	60S ribosomal protein L35-2 [Momordica charantia]	[more]
XP_022134532.1	1.1e-51	98.37	60S ribosomal protein L35 [Momordica charantia]	[more]
XP_004150961.1	1.1e-51	98.37	60S ribosomal protein L35 [Cucumis sativus] >KGN50505.1 hypothetical protein Csa...	[more]
XP_008463526.1	1.5e-51	97.56	PREDICTED: 60S ribosomal protein L35 [Cucumis melo]	[more]

BLAST of Lcy09g005830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39390.1	3.4e-51	91.06	Ribosomal L29 family protein	[more]
AT3G09500.1	1.0e-50	90.24	Ribosomal L29 family protein	[more]
AT5G02610.1	1.7e-50	90.24	Ribosomal L29 family protein	[more]
AT3G55170.1	1.1e-49	88.62	Ribosomal L29 family protein	[more]
AT3G55170.2	1.1e-49	88.62	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	GENE3D	6.10.250.3450		coord: 78..123 e-value: 3.8E-22 score: 80.2
None	No IPR available	PANTHER	PTHR45722:SF18	60S RIBOSOMAL PROTEIN L35-LIKE	coord: 1..123
None	No IPR available	CDD	cd00427	Ribosomal_L29_HIP	coord: 8..64 e-value: 2.84692E-6 score: 39.7783
IPR036049	Ribosomal protein L29/L35 superfamily	GENE3D	1.10.287.310		coord: 1..77 e-value: 5.4E-35 score: 121.6
IPR036049	Ribosomal protein L29/L35 superfamily	SUPERFAMILY	46561	Ribosomal protein L29 (L29p)	coord: 4..65
IPR001854	Ribosomal protein L29/L35	PFAM	PF00831	Ribosomal_L29	coord: 8..64 e-value: 6.4E-17 score: 61.3
IPR001854	Ribosomal protein L29/L35	TIGRFAM	TIGR00012	TIGR00012	coord: 8..64 e-value: 1.0E-17 score: 61.9
IPR001854	Ribosomal protein L29/L35	HAMAP	MF_00374	Ribosomal_L29	coord: 4..64 score: 12.592433
IPR045059	60S ribosomal protein L35	PANTHER	PTHR45722	60S RIBOSOMAL PROTEIN L35	coord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g005830.1	Lcy09g005830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome