Lcy09g005530 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g005530
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr09: 4837203 .. 4837862 (-)
RNA-Seq Expression	Lcy09g005530
Synteny	Lcy09g005530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAATCACCACCTCACCACAATAATTCAACTTAATCAACCATTAATTCTCCTAATTCTCCGTCACCGTCCGCTATGTCGTCAGCCAACGACGCCACCTCTTACAGCCAAAAACTCGACATTTTCCTCATCGCCGTCGGCTCTGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGCTGGTGCGACCGCCGCCGCCTCAACACCGGCGACGAGACGCCGGGTATCGACCTACACTCCCTGCCGCCGGCGGAGACACCGCGGAGCACCGACAATTCCGTGGTCCACTTGATTCCGGCTCACAAATACGAGAAGCGAATGGCGGTGGATGGCGGCGGGTGCGGCGGCGGCGGCGACGGGGACTGTGATGGCACGTGCGCGATCTGTTTGAGCGAGTTCGAAGAGGGGGAGGAAGTAAGGACGTTGCCGGAGTGTATGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCGATGTGTCGTACTGATGCCACTCCGACGTCGTTTCATGACAGGCTGCAGTTTGAGACGCAGCCCAGTTCTGGGATTGCTGTGCACGTGCGGCCCACGAGGGATTGAGTTGTTTCATATTGAAAGGTTTTCTACTTTCTTGAATATGAAAAAATACTTTCC

mRNA sequence

TTGAAATCACCACCTCACCACAATAATTCAACTTAATCAACCATTAATTCTCCTAATTCTCCGTCACCGTCCGCTATGTCGTCAGCCAACGACGCCACCTCTTACAGCCAAAAACTCGACATTTTCCTCATCGCCGTCGGCTCTGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGCTGGTGCGACCGCCGCCGCCTCAACACCGGCGACGAGACGCCGGGTATCGACCTACACTCCCTGCCGCCGGCGGAGACACCGCGGAGCACCGACAATTCCGTGGTCCACTTGATTCCGGCTCACAAATACGAGAAGCGAATGGCGGTGGATGGCGGCGGGTGCGGCGGCGGCGGCGACGGGGACTGTGATGGCACGTGCGCGATCTGTTTGAGCGAGTTCGAAGAGGGGGAGGAAGTAAGGACGTTGCCGGAGTGTATGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCGATGTGTCGTACTGATGCCACTCCGACGTCGTTTCATGACAGGCTGCAGTTTGAGACGCAGCCCAGTTCTGGGATTGCTGTGCACGTGCGGCCCACGAGGGATTGAGTTGTTTCATATTGAAAGGTTTTCTACTTTCTTGAATATGAAAAAATACTTTCC

Coding sequence (CDS)

ATGTCGTCAGCCAACGACGCCACCTCTTACAGCCAAAAACTCGACATTTTCCTCATCGCCGTCGGCTCTGCCGGCGCCGTCGTCACCATTTACCACTGCATCATGGCTTGCTGGTGCGACCGCCGCCGCCTCAACACCGGCGACGAGACGCCGGGTATCGACCTACACTCCCTGCCGCCGGCGGAGACACCGCGGAGCACCGACAATTCCGTGGTCCACTTGATTCCGGCTCACAAATACGAGAAGCGAATGGCGGTGGATGGCGGCGGGTGCGGCGGCGGCGGCGACGGGGACTGTGATGGCACGTGCGCGATCTGTTTGAGCGAGTTCGAAGAGGGGGAGGAAGTAAGGACGTTGCCGGAGTGTATGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCGATGTGTCGTACTGATGCCACTCCGACGTCGTTTCATGACAGGCTGCAGTTTGAGACGCAGCCCAGTTCTGGGATTGCTGTGCACGTGCGGCCCACGAGGGATTGA

Protein sequence

MSSANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPAETPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPECMHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRPTRD

Homology

[Close]

BLAST of Lcy09g005530 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-18
Identity = 53/155 (34.19%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 3   SANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLP-PA 62
           S++ ++S+S  L I LI + ++  ++  Y+ +++ +C R    +  ET  ++ +     +
Sbjct: 47  SSSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFS 106

Query: 63  ETPRSTDN------SVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGT-CAICLSEFEEGE 122
            T R + N      S++  I  +KY+             GDG  DG+ C++CLSEFEE E
Sbjct: 107 STQRISTNGDGLNESMIKSITVYKYK------------SGDGFVDGSDCSVCLSEFEENE 166

Query: 123 EVRTLPECMHSYHVPCIDMWLYSHSSCPMCRTDAT 150
            +R LP+C H++H+PCID WL SHS+CP+CR   T
Sbjct: 167 SLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of Lcy09g005530 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-16
Identity = 51/164 (31.10%), Postives = 83/164 (50.61%), Query Frame = 0


Query: 5   NDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDET-------------P 64
           + ++S    L I LI + ++  ++  Y+ +++ +C RRR N+   +              
Sbjct: 50  DSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQ 109

Query: 65  GIDLHSLPPAETPRST---------DNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGT 124
           G + ++   A  P  T         D S++  I  +KY K             DG  + +
Sbjct: 110 GTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKM------------DGFVESS 169

Query: 125 -CAICLSEFEEGEEVRTLPECMHSYHVPCIDMWLYSHSSCPMCR 146
            C++CLSEF+E E +R LP+C H++HVPCID WL SHS+CP+CR
Sbjct: 170 DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of Lcy09g005530 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.3e-16
Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 21  VGSAGAVVTIYHCIMACWCD-------RRRLNTGDETPGIDLHSLPPAETPRSTDNSVVH 80
           + +A  +V+ Y  ++ C  +       RRR  + D+ P   L    P E  R  D S + 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNP---LMIYSPHEVNRGLDESAIR 111

Query: 81  LIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPECMHSYHVPCIDM 140
            IP  K++KR  V     G          C++CL+EF+E E++R +P C H +H+ CID+
Sbjct: 112 AIPVFKFKKRDVV----AGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDI 171

Query: 141 WLYSHSSCPMCRTDAT 150
           WL  +++CP+CRT  +
Sbjct: 172 WLQGNANCPLCRTSVS 180

[Close]

BLAST of Lcy09g005530 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 5.0e-16
Identity = 47/122 (38.52%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 39  CDRRRL-----NTGDETPGIDLHSLPP---------AETPRSTDNSVVHLIPAHKYEKRM 98
           C RRRL      +   T   DL S  P         + +P   D+SV+  +P   Y    
Sbjct: 79  CRRRRLLHLSSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAA 138

Query: 99  AVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPECMHSYHVPCIDMWLYSHSSCPMC 147
                  G     +C   CA+CL EFEEG+ VRTLP C H++H+ CID WL SH +CP+C
Sbjct: 139 CTGKPAVGKTSAANC-RDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLC 198

[Close]

BLAST of Lcy09g005530 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 43/95 (45.26%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 85  AVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPECMHSYHVPCIDMWLYSHSSCPMC 144
           A D   C   GDGD    CAIC++EF EGEE+R LP C H++HV CID WL S SSCP C
Sbjct: 95  AADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSC 154

Query: 145 RTDATPTSF----HDRLQFETQPSSGIAVHVRPTR 176
           R    P       H     ETQ       H  P++
Sbjct: 155 RRILVPVKCDRCGHHASTAETQVKDQPPHHQHPSQ 189

[Close]

BLAST of Lcy09g005530 vs. ExPASy TrEMBL
Match: A0A6J1FG87 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.2e-82
Identity = 147/174 (84.48%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 3   SANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPAE 62
           S++DA  YSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLN GD+TP  DLHS+  AE
Sbjct: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61

Query: 63  TPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPEC 122
           TPRST+NSVVHLIPAHKYEK+ AVD GGC G      DGTCAICLSEFEEGEE+RTLPEC
Sbjct: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGGCDG------DGTCAICLSEFEEGEEIRTLPEC 121

Query: 123 MHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRPTRD 177
           +HSYHVPCIDMWLYSHSSCPMCRTDATPTS HDRLQFETQPSSGI VHVRPTR+
Sbjct: 122 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRN 169

[Close]

BLAST of Lcy09g005530 vs. ExPASy TrEMBL
Match: A0A5D3DI14 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00280 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 139/174 (79.89%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 2   SSANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPA 61
           SS  DA  YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GD++   D H+LP  
Sbjct: 3   SSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPIT 62

Query: 62  ETPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPE 121
           +TPRST+NSVVHLIPAHKYEKRMAVDGGG G G D D DGTCAICLSEFEEGEE++TLPE
Sbjct: 63  DTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPE 122

Query: 122 CMHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRPTR 176
           C HSYH+PCIDMWLYSHSSCPMCRT+ATPTSF+DRLQF+TQP+SGI VHV PTR
Sbjct: 123 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Lcy09g005530 vs. ExPASy TrEMBL
Match: A0A1S3C9L0 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 139/174 (79.89%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 2   SSANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPA 61
           SS  DA  YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GD++   D H+LP  
Sbjct: 3   SSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPIT 62

Query: 62  ETPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPE 121
           +TPRST+NSVVHLIPAHKYEKRMAVDGGG G G D D DGTCAICLSEFEEGEE++TLPE
Sbjct: 63  DTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPE 122

Query: 122 CMHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRPTR 176
           C HSYH+PCIDMWLYSHSSCPMCRT+ATPTSF+DRLQF+TQP+SGI VHV PTR
Sbjct: 123 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Lcy09g005530 vs. ExPASy TrEMBL
Match: A0A0A0KNT5 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.0e-76
Identity = 139/174 (79.89%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 2   SSANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPA 61
           SS  DA  YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GD++   D H+LP  
Sbjct: 3   SSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPIT 62

Query: 62  ETPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPE 121
           +TPRST+NSVVHLIPAHKYEKRMAVDGG  GGG D D DGTCAICLSEFEEGEE++TLPE
Sbjct: 63  DTPRSTENSVVHLIPAHKYEKRMAVDGG--GGGKDVDGDGTCAICLSEFEEGEEIKTLPE 122

Query: 122 CMHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRPTR 176
           C HSYH+PCIDMWLYSHSSCPMCRT+ATPTSF+DRLQFETQ +SGI VHV PTR
Sbjct: 123 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTR 174

[Close]

BLAST of Lcy09g005530 vs. ExPASy TrEMBL
Match: A0A6J1BX43 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111006127 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.9e-60
Identity = 127/181 (70.17%), Postives = 136/181 (75.14%), Query Frame = 0


Query: 3   SANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRR-LNTGDETPGI-DLHSLPP 62
           S ++A +YS KLDIFLIAVGSAG VVTIYHCIMACWCDRRR    G +TP   DLHSLP 
Sbjct: 7   SPSEAIAYSHKLDIFLIAVGSAGIVVTIYHCIMACWCDRRRPSGGGGQTPAARDLHSLPG 66

Query: 63  AETPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLP 122
            ETPRST+NSVVHLIPAHKYEKRM  D    G       DGTCAICLSEFEEGE++RTLP
Sbjct: 67  LETPRSTENSVVHLIPAHKYEKRM--DHLEVG-------DGTCAICLSEFEEGEDLRTLP 126

Query: 123 ECMHSYHVPCIDMWLYSHSSCPMCRTDATPTS-----FHDRLQFETQPSSGIAVHVRPTR 177
           ECMHSYHVPCIDMWLYSHSSCPMCR DATPT      F D L  E    S + VHVR TR
Sbjct: 127 ECMHSYHVPCIDMWLYSHSSCPMCRADATPTPSSPAVFRDGLDSE----SVVVVHVRATR 174

[Close]

BLAST of Lcy09g005530 vs. NCBI nr
Match: XP_022939139.1 (RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.3 bits (804), Expect = 6.6e-82
Identity = 147/174 (84.48%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 3   SANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPAE 62
           S++DA  YSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLN GD+TP  DLHS+  AE
Sbjct: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61

Query: 63  TPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPEC 122
           TPRST+NSVVHLIPAHKYEK+ AVD GGC G      DGTCAICLSEFEEGEE+RTLPEC
Sbjct: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGGCDG------DGTCAICLSEFEEGEEIRTLPEC 121

Query: 123 MHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRPTRD 177
           +HSYHVPCIDMWLYSHSSCPMCRTDATPTS HDRLQFETQPSSGI VHVRPTR+
Sbjct: 122 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRN 169

[Close]

BLAST of Lcy09g005530 vs. NCBI nr
Match: XP_038889238.1 (probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 3.3e-81
Identity = 144/171 (84.21%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 3   SANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPAE 62
           S  DAT YS+KLDIFL+A+GSAGAVVTIYHCIMACWCDRRR N+G +TP  D HSLP  +
Sbjct: 2   SDTDATIYSRKLDIFLVAIGSAGAVVTIYHCIMACWCDRRRFNSGGQTPANDPHSLPITD 61

Query: 63  TPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPEC 122
           TPRST+NSVVHLIPAHKYEKRMAVDGGGC GG  G+ DGTCAICLSEFEEGEE++TLPEC
Sbjct: 62  TPRSTENSVVHLIPAHKYEKRMAVDGGGC-GGDHGEGDGTCAICLSEFEEGEEIKTLPEC 121

Query: 123 MHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRP 174
           MHSYHVPCIDMWLYSHSSCPMCRT+ATPTSFHDRLQFETQPSSGI VHV P
Sbjct: 122 MHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPSSGIVVHVLP 171

[Close]

BLAST of Lcy09g005530 vs. NCBI nr
Match: XP_023551520.1 (probable E3 ubiquitin-protein ligase ATL44 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 312.0 bits (798), Expect = 3.3e-81
Identity = 146/174 (83.91%), Postives = 156/174 (89.66%), Query Frame = 0


Query: 3   SANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPAE 62
           S++DA  YSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLN GD+TP  DLHS+  AE
Sbjct: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61

Query: 63  TPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPEC 122
           TPRST+NSVVHLIPA+KYEK+ AVD GGC G      DGTCAICLSEFEEGEE+RTLPEC
Sbjct: 62  TPRSTENSVVHLIPAYKYEKQKAVDSGGCDG------DGTCAICLSEFEEGEEIRTLPEC 121

Query: 123 MHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRPTRD 177
           +HSYHVPCIDMWLYSHSSCPMCRTDATPTS HDRLQFETQPSSGI VHVRPTR+
Sbjct: 122 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRN 169

[Close]

BLAST of Lcy09g005530 vs. NCBI nr
Match: KAG6578710.1 (putative E3 ubiquitin-protein ligase ATL44, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303.5 bits (776), Expect = 1.2e-78
Identity = 142/168 (84.52%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 3   SANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPAE 62
           S++DA  YSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLN GD+TP  DLHS+  AE
Sbjct: 2   SSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLAE 61

Query: 63  TPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPEC 122
           TPRST+NSVVHLIPAHKYEK+ AVD GGC G      DGTCAICLSEFEEGEE+RTLPEC
Sbjct: 62  TPRSTENSVVHLIPAHKYEKQKAVDSGGCDG------DGTCAICLSEFEEGEEIRTLPEC 121

Query: 123 MHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVH 171
           +HSYHVPCIDMWLYSHSSCPMCRTDATPTS HDRLQFETQPSSGI VH
Sbjct: 122 LHSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVH 163

[Close]

BLAST of Lcy09g005530 vs. NCBI nr
Match: XP_008458935.1 (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa] >TYK22889.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 5.8e-78
Identity = 139/174 (79.89%), Postives = 154/174 (88.51%), Query Frame = 0


Query: 2   SSANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLPPA 61
           SS  DA  YS+KLDIFLIA+GSAGAVVTIYHCIMACWCDRRR  +GD++   D H+LP  
Sbjct: 3   SSTGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPIT 62

Query: 62  ETPRSTDNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPE 121
           +TPRST+NSVVHLIPAHKYEKRMAVDGGG G G D D DGTCAICLSEFEEGEE++TLPE
Sbjct: 63  DTPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPE 122

Query: 122 CMHSYHVPCIDMWLYSHSSCPMCRTDATPTSFHDRLQFETQPSSGIAVHVRPTR 176
           C HSYH+PCIDMWLYSHSSCPMCRT+ATPTSF+DRLQF+TQP+SGI VHV PTR
Sbjct: 123 CKHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Lcy09g005530 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-19
Identity = 53/155 (34.19%), Postives = 88/155 (56.77%), Query Frame = 0


Query: 3   SANDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDETPGIDLHSLP-PA 62
           S++ ++S+S  L I LI + ++  ++  Y+ +++ +C R    +  ET  ++ +     +
Sbjct: 47  SSSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFS 106

Query: 63  ETPRSTDN------SVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGT-CAICLSEFEEGE 122
            T R + N      S++  I  +KY+             GDG  DG+ C++CLSEFEE E
Sbjct: 107 STQRISTNGDGLNESMIKSITVYKYK------------SGDGFVDGSDCSVCLSEFEENE 166

Query: 123 EVRTLPECMHSYHVPCIDMWLYSHSSCPMCRTDAT 150
            +R LP+C H++H+PCID WL SHS+CP+CR   T
Sbjct: 167 SLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of Lcy09g005530 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 88.2 bits (217), Expect = 7.2e-18
Identity = 51/164 (31.10%), Postives = 83/164 (50.61%), Query Frame = 0


Query: 5   NDATSYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNTGDET-------------P 64
           + ++S    L I LI + ++  ++  Y+ +++ +C RRR N+   +              
Sbjct: 50  DSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQ 109

Query: 65  GIDLHSLPPAETPRST---------DNSVVHLIPAHKYEKRMAVDGGGCGGGGDGDCDGT 124
           G + ++   A  P  T         D S++  I  +KY K             DG  + +
Sbjct: 110 GTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKM------------DGFVESS 169

Query: 125 -CAICLSEFEEGEEVRTLPECMHSYHVPCIDMWLYSHSSCPMCR 146
            C++CLSEF+E E +R LP+C H++HVPCID WL SHS+CP+CR
Sbjct: 170 DCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of Lcy09g005530 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17
Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 21  VGSAGAVVTIYHCIMACWCD-------RRRLNTGDETPGIDLHSLPPAETPRSTDNSVVH 80
           + +A  +V+ Y  ++ C  +       RRR  + D+ P   L    P E  R  D S + 
Sbjct: 52  LATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNP---LMIYSPHEVNRGLDESAIR 111

Query: 81  LIPAHKYEKRMAVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPECMHSYHVPCIDM 140
            IP  K++KR  V     G          C++CL+EF+E E++R +P C H +H+ CID+
Sbjct: 112 AIPVFKFKKRDVV----AGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDI 171

Query: 141 WLYSHSSCPMCRTDAT 150
           WL  +++CP+CRT  +
Sbjct: 172 WLQGNANCPLCRTSVS 180

[Close]

BLAST of Lcy09g005530 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-17
Identity = 47/122 (38.52%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 39  CDRRRL-----NTGDETPGIDLHSLPP---------AETPRSTDNSVVHLIPAHKYEKRM 98
           C RRRL      +   T   DL S  P         + +P   D+SV+  +P   Y    
Sbjct: 79  CRRRRLLHLSSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAA 138

Query: 99  AVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPECMHSYHVPCIDMWLYSHSSCPMC 147
                  G     +C   CA+CL EFEEG+ VRTLP C H++H+ CID WL SH +CP+C
Sbjct: 139 CTGKPAVGKTSAANC-RDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLC 198

[Close]

BLAST of Lcy09g005530 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.6e-17
Identity = 47/122 (38.52%), Postives = 61/122 (50.00%), Query Frame = 0


Query: 39  CDRRRL-----NTGDETPGIDLHSLPP---------AETPRSTDNSVVHLIPAHKYEKRM 98
           C RRRL      +   T   DL S  P         + +P   D+SV+  +P   Y    
Sbjct: 79  CRRRRLLHLSSASSASTSSSDLRSFSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAA 138

Query: 99  AVDGGGCGGGGDGDCDGTCAICLSEFEEGEEVRTLPECMHSYHVPCIDMWLYSHSSCPMC 147
                  G     +C   CA+CL EFEEG+ VRTLP C H++H+ CID WL SH +CP+C
Sbjct: 139 CTGKPAVGKTSAANC-RDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLC 198

The following BLAST results are available for this feature:

BLAST of Lcy09g005530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	1.8e-18	34.19	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SRQ8	1.0e-16	31.10	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
P93823	2.3e-16	32.35	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q67YI6	5.0e-16	38.52	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
Q9ZT49	1.1e-15	45.26	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]

BLAST of Lcy09g005530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG87	3.2e-82	84.48	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137...	[more]
A0A5D3DI14	2.8e-78	79.89	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C9L0	2.8e-78	79.89	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 ...	[more]
A0A0A0KNT5	2.0e-76	79.89	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE...	[more]
A0A6J1BX43	5.9e-60	70.17	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11100612...	[more]

BLAST of Lcy09g005530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939139.1	6.6e-82	84.48	RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 fin...	[more]
XP_038889238.1	3.3e-81	84.21	probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida]	[more]
XP_023551520.1	3.3e-81	83.91	probable E3 ubiquitin-protein ligase ATL44 [Cucurbita pepo subsp. pepo]	[more]
KAG6578710.1	1.2e-78	84.52	putative E3 ubiquitin-protein ligase ATL44, partial [Cucurbita argyrosperma subs...	[more]
XP_008458935.1	5.8e-78	79.89	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H...	[more]

BLAST of Lcy09g005530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	1.3e-19	34.19	RING/U-box superfamily protein	[more]
AT3G03550.1	7.2e-18	31.10	RING/U-box superfamily protein	[more]
AT1G04360.1	1.6e-17	32.35	RING/U-box superfamily protein	[more]
AT3G18930.1	3.6e-17	38.52	RING/U-box superfamily protein	[more]
AT3G18930.2	3.6e-17	38.52	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 103..144 e-value: 2.6E-7 score: 40.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 102..145 e-value: 2.7E-13 score: 50.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 103..145 score: 12.267982
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 58..151 e-value: 7.4E-21 score: 75.6
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 7..157
None	No IPR available	PANTHER	PTHR45676:SF43	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 7..157
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 96..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g005530.1	Lcy09g005530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane