Lcy09g005290 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g005290
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	cyclin-dependent protein kinase inhibitor SMR2
Location	Chr09: 4651503 .. 4651971 (-)
RNA-Seq Expression	Lcy09g005290
Synteny	Lcy09g005290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAGTATAGTTTAGTTTAATACAGGGCGAAGTGAAGTGGTGGCGATGGCAGAGAAAGAAGATGGTTGCTGCAACACGCCGAGACACAGCGGCTGCCGTATTCCAGTGGCGTCCGGTTGTCCGCCGCCGCCGCCAAGGAAGAAACCGTTTTACAACATGGCGAAGGTCGATGATCCACCAAAGAATGGGTATTTCAATCACCCTGATATTGAGCTTCTATTCTCCATTATCGCTGTGACACTCCCCACAAAGAAAGCTTGTGCTTGAATTTACCAATAAGGTGCTTATACTGTGTAATTATATATATAGATGATGATATTCAGCCACCAATTGCTATATATATATATATGGTTTTCCCCCCTCTCTCTCTCTCTGTCTTTTGTTCTGTATTTTTCAGATCTTGATTTTGGAGTGTAAACTTAAAATTTAGCTTGTGTTCTCAACAGTGTTTTGTTTCACTAGTTTCTA

mRNA sequence

TTAGAGTATAGTTTAGTTTAATACAGGGCGAAGTGAAGTGGTGGCGATGGCAGAGAAAGAAGATGGTTGCTGCAACACGCCGAGACACAGCGGCTGCCGTATTCCAGTGGCGTCCGGTTGTCCGCCGCCGCCGCCAAGGAAGAAACCGTTTTACAACATGGCGAAGGTCGATGATCCACCAAAGAATGGGTATTTCAATCACCCTGATATTGAGCTTCTATTCTCCATTATCGCTGTGACACTCCCCACAAAGAAAGCTTGTGCTTGAATTTACCAATAAGGTGCTTATACTGTGTAATTATATATATAGATGATGATATTCAGCCACCAATTGCTATATATATATATATGGTTTTCCCCCCTCTCTCTCTCTCTGTCTTTTGTTCTGTATTTTTCAGATCTTGATTTTGGAGTGTAAACTTAAAATTTAGCTTGTGTTCTCAACAGTGTTTTGTTTCACTAGTTTCTA

Coding sequence (CDS)

ATGGCAGAGAAAGAAGATGGTTGCTGCAACACGCCGAGACACAGCGGCTGCCGTATTCCAGTGGCGTCCGGTTGTCCGCCGCCGCCGCCAAGGAAGAAACCGTTTTACAACATGGCGAAGGTCGATGATCCACCAAAGAATGGGTATTTCAATCACCCTGATATTGAGCTTCTATTCTCCATTATCGCTGTGACACTCCCCACAAAGAAAGCTTGTGCTTGA

Protein sequence

MAEKEDGCCNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAVTLPTKKACA

Homology

[Close]

BLAST of Lcy09g005290 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-09
Identity = 26/57 (45.61%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 9  CNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAVT 66
          C TP    CRIP    CPPP  RK+      K  +PPK GYF  PD++L FS++A +
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAAS 78

[Close]

BLAST of Lcy09g005290 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-09
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 5  EDGCCNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAV 64
          E+G C TPR +  RIPVAS CPPPP +K     + +  DPP+NGYF  PD+E LF     
Sbjct: 12 EEG-CTTPRSTMYRIPVASVCPPPPRKK---LMVVRKRDPPRNGYFQPPDLETLF----Y 71

Query: 65 TLPTKKACA 74
            P ++ACA
Sbjct: 72 AQPRREACA 72

[Close]

BLAST of Lcy09g005290 vs. ExPASy TrEMBL
Match: A0A059AD78 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01238 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 9  CNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAVTLPT 68
          C TPRH GC+IPV   CPPP PRKK  Y   +  DPPKNG+F  PD+ELLF+++    P 
Sbjct: 15 CRTPRHRGCQIPVDMACPPPAPRKKAAYE-GRRRDPPKNGFFQPPDLELLFAVV----PQ 74

Query: 69 KKACA 74
          ++ACA
Sbjct: 75 REACA 74

[Close]

BLAST of Lcy09g005290 vs. ExPASy TrEMBL
Match: A0A1U8A7K0 (cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LOC104601057 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.7e-11
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 5  EDGCCNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAV 64
          E+G C TP+H  CRIP+AS C PPPPRKKP Y   K  DPP NGYF  PD+ELLF+I   
Sbjct: 36 EEG-CETPKHRDCRIPMASVC-PPPPRKKPIY--GKKRDPPTNGYFQPPDLELLFAI--- 95

Query: 65 TLPTKKAC 73
            P ++AC
Sbjct: 96 -APRREAC 95

[Close]

BLAST of Lcy09g005290 vs. ExPASy TrEMBL
Match: A0A1U8A503 (uncharacterized protein LOC104597159 OS=Nelumbo nucifera OX=4432 GN=LOC104597159 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-10
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MAEKEDGCCNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFS 60
          M E+E G C TP+H  C+IP AS C PPPPRKKP Y   K  DPPKNGYF  PD+E+LF+
Sbjct: 11 MTEEEQG-CQTPKHGECQIPTASVC-PPPPRKKPVY--GKKRDPPKNGYFQPPDLEVLFA 67

Query: 61 I 62
          +
Sbjct: 71 L 67

[Close]

BLAST of Lcy09g005290 vs. ExPASy TrEMBL
Match: A0A067FZL3 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045306mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MAEKEDGCCNTPRHSGCRIP-VASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLF 60
          M ++E+G C+TP  + CRIP V S CPPPPPRKKPF +  K   PPKN YF  P+IELLF
Sbjct: 8  MMQEEEGGCSTPTRNECRIPAVPSACPPPPPRKKPF-SCGKKRGPPKNAYFQSPEIELLF 67

Query: 61 SI 62
          ++
Sbjct: 68 AM 68

[Close]

BLAST of Lcy09g005290 vs. ExPASy TrEMBL
Match: V4SGZ5 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029728mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-10
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MAEKEDGCCNTPRHSGCRIP-VASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLF 60
          M ++E+G C+TP  + CRIP V S CPPPPPRKKPF +  K   PPKN YF  P+IELLF
Sbjct: 8  MMQEEEGGCSTPTRNECRIPAVPSACPPPPPRKKPF-SCGKKRGPPKNAYFQSPEIELLF 67

Query: 61 SI 62
          ++
Sbjct: 68 AM 68

[Close]

BLAST of Lcy09g005290 vs. NCBI nr
Match: KAF8041880.1 (hypothetical protein BT93_A0470 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 9  CNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAVTLPT 68
          C TPRH  C+IPV + CPPP PRKKP +   +  DPPKNG+F  PD+ELLF+I+    P 
Sbjct: 15 CRTPRHRACQIPVDTACPPPAPRKKPAHE-GRRRDPPKNGFFQPPDLELLFAIV----PQ 74

Query: 69 KKACA 74
          ++ACA
Sbjct: 75 REACA 74

[Close]

BLAST of Lcy09g005290 vs. NCBI nr
Match: KCW51788.1 (hypothetical protein EUGRSUZ_J01238 [Eucalyptus grandis])

HSP 1 Score: 78.6 bits (192), Expect = 2.5e-11
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 9  CNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAVTLPT 68
          C TPRH GC+IPV   CPPP PRKK  Y   +  DPPKNG+F  PD+ELLF+++    P 
Sbjct: 15 CRTPRHRGCQIPVDMACPPPAPRKKAAYE-GRRRDPPKNGFFQPPDLELLFAVV----PQ 74

Query: 69 KKACA 74
          ++ACA
Sbjct: 75 REACA 74

[Close]

BLAST of Lcy09g005290 vs. NCBI nr
Match: VFQ80386.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 77.8 bits (190), Expect = 4.3e-11
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 2  AEKEDGCCNTPRHSGCRI-PVASGCPPPPPRKKPFYNMAKVD--DPPKNGYFNHPDIELL 61
          AE E+G C TPRH GCR+ P A  CPPPPPRKKP+Y   + +   PP  GYF  PD+EL 
Sbjct: 12 AEAEEG-CRTPRHDGCRLPPEAKVCPPPPPRKKPYYGRRRAEKRKPPAGGYFQPPDLELF 71

Query: 62 FSIIAVTLPTKKA 72
          F++I    P +KA
Sbjct: 72 FALIT---PRRKA 80

[Close]

BLAST of Lcy09g005290 vs. NCBI nr
Match: XP_039159875.1 (cyclin-dependent protein kinase inhibitor SMR4-like [Eucalyptus grandis])

HSP 1 Score: 77.8 bits (190), Expect = 4.3e-11
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 9  CNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAVTLPT 68
          C TPRH GC+IPV   CPPP PRKK  Y   +  DPPKNG+F  PD+ELLF+++    P 
Sbjct: 15 CRTPRHRGCQIPVDMTCPPPAPRKKAAYE-GRRRDPPKNGFFQPPDLELLFAVV----PQ 74

Query: 69 KKACA 74
          ++ACA
Sbjct: 75 REACA 74

[Close]

BLAST of Lcy09g005290 vs. NCBI nr
Match: XP_010262549.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Nelumbo nucifera])

HSP 1 Score: 76.6 bits (187), Expect = 9.6e-11
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 5  EDGCCNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAV 64
          E+G C TP+H  CRIP+AS C PPPPRKKP Y   K  DPP NGYF  PD+ELLF+I   
Sbjct: 36 EEG-CETPKHRDCRIPMASVC-PPPPRKKPIY--GKKRDPPTNGYFQPPDLELLFAI--- 95

Query: 65 TLPTKKAC 73
            P ++AC
Sbjct: 96 -APRREAC 95

[Close]

BLAST of Lcy09g005290 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-10
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 5  EDGCCNTPRHSGCRIPVASGCPPPPPRKKPFYNMAKVDDPPKNGYFNHPDIELLFSIIAV 64
          E+G C TPR +  RIPVAS CPPPP +K     + +  DPP+NGYF  PD+E LF     
Sbjct: 12 EEG-CTTPRSTMYRIPVASVCPPPPRKK---LMVVRKRDPPRNGYFQPPDLETLF----Y 71

Query: 65 TLPTKKACA 74
            P ++ACA
Sbjct: 72 AQPRREACA 72

The following BLAST results are available for this feature:

BLAST of Lcy09g005290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNX4	2.5e-09	45.61	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1JPP8	3.2e-09	49.28	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Lcy09g005290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A059AD78	1.2e-11	55.38	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J01238 PE=4 SV...	[more]
A0A1U8A7K0	4.7e-11	58.82	cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LO...	[more]
A0A1U8A503	1.0e-10	60.66	uncharacterized protein LOC104597159 OS=Nelumbo nucifera OX=4432 GN=LOC104597159...	[more]
A0A067FZL3	1.8e-10	58.06	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g045306mg PE=4 SV=1	[more]
V4SGZ5	1.8e-10	58.06	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029728mg PE=4 ...	[more]

BLAST of Lcy09g005290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF8041880.1	2.5e-11	55.38	hypothetical protein BT93_A0470 [Corymbia citriodora subsp. variegata]	[more]
KCW51788.1	2.5e-11	55.38	hypothetical protein EUGRSUZ_J01238 [Eucalyptus grandis]	[more]
VFQ80386.1	4.3e-11	53.42	unnamed protein product [Cuscuta campestris]	[more]
XP_039159875.1	4.3e-11	55.38	cyclin-dependent protein kinase inhibitor SMR4-like [Eucalyptus grandis]	[more]
XP_010262549.1	9.6e-11	58.82	PREDICTED: cyclin-dependent protein kinase inhibitor SMR2 [Nelumbo nucifera]	[more]

BLAST of Lcy09g005290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	2.3e-10	49.28	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 4..63
None	No IPR available	PANTHER	PTHR33142:SF56	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5	coord: 4..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g005290.1	Lcy09g005290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus