Lcy09g004980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g004980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Cytochrome c-type biogenesis protein
Location	Chr09: 4430370 .. 4433557 (-)
RNA-Seq Expression	Lcy09g004980
Synteny	Lcy09g004980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTGATGAGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAACGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGGTGCCACTTATTTAGATAAACTCAAAGCTGTATAAGTTAACTTAGAGCGGAAAAATCAGAGAAACTTCGGAAAAGAACTACACGAAAGTTCAAAAACTCTTGAAAATTTCACAAAAGGTGGTTCAGGTAAAGGGGCAATGTATGTAGCATTAGGTGGTTCACTATTTCATTATTTTATTTTCATGAACTACTTGAAGGAAATAAAAATAAATTAGGATATTTTTTTTTTGGGTTTTCGTTATGCCTCTAGAGTTGGTGTTTTGATGCAAGAGATTTTCCTTGGATTAGTAGATTACCTTCAAAATAACTATCTATGCTGGCAGTCCCGTTGAAATTCTTAAATGATGCATATTTTTCAATAAACTCCATTGGATCACAGTGCCTCTTATGGCATAATGATGGACTAAAAAGACTGATTTACCAGATCATGAATCTTTGCTACATAAGGATTTCTCACTGATCTGTTGAGTTTTCTATTTTGTGCCCATAATTTTTGGATCAATATTTTTCTGCAATAAATTTTCTTGATATTGGGTTGTATTTGTAATATCACCGTAGTTGATCCGTGATGAGATTCGGTCTGGGAAAACGGACAAGGAGATCTATAAAAAGCTTGAGAATGATTATGGGGAGACCATCCTTTATACCCCAAAGTTCGACCTTCAAACTGCAGCATTATGGCTATCACCGGTCAGTTAATAATATTAGTAACAAATACAAAATTAAGTAAATATTTCTACCTATTTCTTCTAATTTTAGTTTTAAATATGTTGCTTTGGAATAGGTGATAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAATCTAACGTTCACATCATGGCTTTGAATCTAGTCAGAGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCTCCTGAGAGGACTACTTCTTCCTGGTGGAGGAGTTGGCGAAGGCAGTGAGGCAACTATTCTCTATTGCTAGCTCGAACAACAGTTAAAAGAGTTTCAGATTTCAGAGTATGTTGAAGATCAATAAATTAGATTACAGATATATGACAAGTATGTTGAAGATCAATAAATTAGATTACAGATATATGACAATCAGCCTTTAGTGAGGTTAATTTGGTTTTTGTCCTGTGAATCATGATGCAATTTTATGTACTGTACTCAACGATCAATTTATGATTGCTTTTGTTAGAAAACTGTTACTGAGTAACATCTAAGTGTGAACTTGCACATGACAATTGGTTTATATTTGTTTCTTATGGCTGGATTTGGATACTCACCCAGTTAGGTTCGTTGACTTTTATGAAGGAAACAAAATGCCAACTGTTAGGTACCTGATTGTAATTTTTAGATCATTGTTGTGTGAAGATCAAATAGCAGACCGTGGCCATTCCATGCATTGGCATATGCAAATTGCTGAAAAAAAGTGGCTTAAACTGGTATCCACTCAGTCAATAACACAGACACCAAAAGGTTTTGATGGTCAAATCTATCTTTATTTTAGAAACCATGTAAAAACAATTATGCATGTGTTTTTTTTTTCAGTTTGGGTAAAAGATAGACTTTTGCAAGTTGTCTCTTTCCACGATGTTGACTTCAATTTATAACAATGAACTTTTGTTGACATAACTCTTCCACTTGGTTTTATTTCTTTTGTTCTTATGGTTGGTGAGTGGAATGATAGGGATAGGATGGGAAAGACTCAGTGCAAAAGACCAACCTCCATGCAAGCAAGGTACAATCGTACAGAACAGAACACACATTGTATATTCATCTGCAAGTAGATACTTATTTGCTAAATATCAGATGGATACTAGTTATGGTGAAAATGTGCAAACTGATCAACTCGAATTTGCAGGTCCAGCCACGTATCATCCTACAGTTAGCCCACATACTAGTTATGTTGAAAATACACAATCTGCTCAACCCAACTTCTAATGTCCAACCAAGTATCAAGCAAATACAGTCAGTCCAAATACTAGTTATGGTGGAAATATACATTTTTCTCCAGGTCCCACCACGTATCAAATAAATACAGTCCAAGGAACTGTTTTTGAATTGGATTGCCATGAAGATGAGACAAATGGTTAGTTTTTGCTGACAAATTCAGTTAATAAGTGTATTGATGGTAATATATATTCCCGAAGGTTGTATTCTTTAAAAAAGTATTTAAACTGGAAGGTATGTCGAACTCATCCTTAGTTTGTGTTTGGCAGTGGTCATGACAGCATTCCTGCCATGTGTGACATTTGGACAAATTGCAGAAGTAATGGATCAAGGAGAATTTTGTAAGGGCACCCTTTAAGTTTAACCTTCAACTTCTTAACTCTTTCCAATTCCTTCATGTTTTTCTCGTATGCTTACCATTTCACAGCTTCCAATTGTGTTAAAAGTTAAATCGAGGTCTTCTGCGTCTTGCTGACTTTATTATCATTTGTGATACTCATTGCAGCCTGTCCTCTGGGGAGTTATTATATACGCTCTGATGATGCCTGCTTTGCGCTCTCAATGAATAATGGGCTCATGTTGTTAACTCTGCCAAGAATTCAGAGAGCTTCGAAGGAGAGGATTTGACCCATATTTAGGTACTTATAATTCTTCTTTTAATCCTGTTAATAAACCGAAGAAATCATTGAGGAACTTTGTTAAGCACTAGCAAAAATCAGCTTTTTTGTGCCATACAACGGCCCTGACAACTCCCAGAGGGACTAAATTTGCTTTCAGACTAAGGAGAAGATAGTGCTTTTTCTCTCTGGTCAACATGTCTGAAATTCAAATGGGATTCACTTATTTCCAATAATTTGTATGATTCTTAGTTATTGTAATTGGTATATGATTGTCATACAAATCACTTCTACCAAGCAAGTGCTTAAAAACCTTTTTTTTTTCAAGTATTTGTAAAGTCGATCCAAACAGACTACCCTTAGTTTAATAGCTCAACTATTTGATTCGTGTAGTTTTAGAAGTGTGCTTAGGTACTAGCCTTACCAGATAATTATCATTATCTTAAAAC

mRNA sequence

ATGGAGAGTGATGAGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAACGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATCCGTGATGAGATTCGGTCTGGGAAAACGGACAAGGAGATCTATAAAAAGCTTGAGAATGATTATGGGGAGACCATCCTTTATACCCCAAAGTTCGACCTTCAAACTGCAGCATTATGGCTATCACCGGTGATAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAATCTAACGTTCACATCATGGCTTTGAATCTAGTCAGAGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCTCCTGAGAGGACTACTTCTTCCTGGTGGAGGAGTTGGCGAAGGCAGTGAGGCAACTATTCTCTATTGCTAGCTCGAACAACAGTTAAAAGAGTTTCAGATTTCAGAGGATAGGATGGGAAAGACTCAGTGCAAAAGACCAACCTCCATGCAAGCAAGGTCCAGCCACGTATCATCCTACAGTTAGCCCACATACTAGTTATGTTGAAAATACACAATCTGCTCAACCCAACTTCTAATGTCCAACCAAGTATCAAGCAAATACAGTCAGTCCAAATACTAGTTATGGTGGAAATATACATTTTTCTCCAGGTCCCACCACGTATCAAATAAATACAGTCCAAGGAACTGTTTTTGAATTGGATTGCCATGAAGATGAGACAAATGTGGTCATGACAGCATTCCTGCCATGTGTGACATTTGGACAAATTGCAGAAGTAATGGATCAAGGAGAATTTTCCTGTCCTCTGGGGAGTTATTATATACGCTCTGATGATGCCTGCTTTGCGCTCTCAATGAATAATGGGCTCATGTTGTTAACTCTGCCAAGAATTCAGAGAGCTTCGAAGGAGAGGATTTGACCCATATTTAGGTACTTATAATTCTTCTTTTAATCCTGTTAATAAACCGAAGAAATCATTGAGGAACTTTGTTAAGCACTAGCAAAAATCAGCTTTTTTGTGCCATACAACGGCCCTGACAACTCCCAGAGGGACTAAATTTGCTTTCAGACTAAGGAGAAGATAGTGCTTTTTCTCTCTGGTCAACATGTCTGAAATTCAAATGGGATTCACTTATTTCCAATAATTTGTATGATTCTTAGTTATTGTAATTGGTATATGATTGTCATACAAATCACTTCTACCAAGCAAGTGCTTAAAAACCTTTTTTTTTTCAAGTATTTGTAAAGTCGATCCAAACAGACTACCCTTAGTTTAATAGCTCAACTATTTGATTCGTGTAGTTTTAGAAGTGTGCTTAGGTACTAGCCTTACCAGATAATTATCATTATCTTAAAAC

Coding sequence (CDS)

ATGGAGAGTGATGAGGATGCTGTGAAAAAAACGCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAACGTTAGGTGCATTGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTCCTCAGAAAGTTGATCCGTGATGAGATTCGGTCTGGGAAAACGGACAAGGAGATCTATAAAAAGCTTGAGAATGATTATGGGGAGACCATCCTTTATACCCCAAAGTTCGACCTTCAAACTGCAGCATTATGGCTATCACCGGTGATAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAATCTAACGTTCACATCATGGCTTTGAATCTAGTCAGAGGTGTTCCATTGACCCCTAAAGAGAAGCAAACCATGTTAGATCTCCTCTCACCTCCACCTCCTGAGAGGACTACTTCTTCCTGGTGGAGGAGTTGGCGAAGGCAGTGA

Protein sequence

MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ

Homology

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BLAST of Lcy09g004980 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.0e-65
Identity = 121/152 (79.61%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           M ++ED VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGK+D
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIYKKL+ DYGETILYTPKFDLQTAA+WLSPVIV G AAGVWAY KH+Q++NVHIMALN
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYKKHRQRTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWW 153
           LVRGVPLTP+EK+TMLD+L+PPPP    + WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPPP---ANKWW 148

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BLAST of Lcy09g004980 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.0e-65
Identity = 121/152 (79.61%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           M ++ED VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGK+D
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIYKKL+ DYGETILYTPKFDLQTAA+WLSPVIV G AAGVWAY KH+Q++NVHIMALN
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWW 153
           LVRGVPLTP+EK+TMLD+L+PPPP    + WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPPP---ANKWW 148

[Close]

BLAST of Lcy09g004980 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 9.3e-54
Identity = 106/156 (67.95%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIY KLE+++GET+LY PKFDLQTAALWL+PVI+AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PPERTTSSWWRSW 156
           L+RGVPLTPKE+ T+LD+L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

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BLAST of Lcy09g004980 vs. ExPASy Swiss-Prot
Match: P45405 (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ccmH PE=3 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 7.7e-16
Identity = 46/136 (33.82%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 6   DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYK 65
           D +      E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G ++ ++  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 66  KLENDYGETILYTPKFDLQTAALW-LSPVIVAGAAAGVWAYSKHKQKSNVHIMALNLVRG 125
            L   YGE +L  P+F+ QT  LW L P+++ G    +W   + + +S   + A      
Sbjct: 85  FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------ 144

Query: 126 VPLTPKEKQTMLDLLS 141
            PLTP E+  +  L+S
Sbjct: 145 PPLTPDEEARLAALMS 154

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BLAST of Lcy09g004980 vs. ExPASy Swiss-Prot
Match: P45406 (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ccmH PE=3 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 7.2e-14
Identity = 49/138 (35.51%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 6   DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYK 65
           D V     +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G +D+ +  
Sbjct: 24  DEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVIS 83

Query: 66  KLENDYGETILYTPKFDLQTAALWLSPVI--VAGAAAGVWAYSKHKQKSNVHIMALNLVR 125
            + + YGE +L  P+ + +T  LW  P I  VAG    V A  +   +          V 
Sbjct: 84  YVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VP 143

Query: 126 GVPLTPKEKQTMLDLLSP 142
           G PL+ +EK+ +  LL P
Sbjct: 144 GAPLSDEEKERLDRLLRP 151

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BLAST of Lcy09g004980 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 149/158 (94.30%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTMLDLLSPPP +RT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Lcy09g004980 vs. ExPASy TrEMBL
Match: A0A5A7TY95 (Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00810 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 149/158 (94.30%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTMLDLLSPPP +RT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Lcy09g004980 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.5e-78
Identity = 146/158 (92.41%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           MES++DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIY+KLE+DYGET+LYTPKFDLQTAALWLSPV+VAGAAAGVWAY+KHKQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTMLDLL+PPPP+RT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Lcy09g004980 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.3e-78
Identity = 147/158 (93.04%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME+DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           K+IYKKLENDYGETILYTPKFDLQTA LWLSPVIVAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTMLDLLSPPP +RT SSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Lcy09g004980 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.4e-76
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           MESD DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEI+KKLENDYGETILYTPKFDLQTAALWLSPV+VAGAAAGVWAYSK+KQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           +VRGVPLTP+EKQTMLDLLSPPPP+R  S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Lcy09g004980 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 301.6 bits (771), Expect = 4.0e-78
Identity = 149/158 (94.30%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTMLDLLSPPP +RT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Lcy09g004980 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 301.2 bits (770), Expect = 5.2e-78
Identity = 146/158 (92.41%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           MES++DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIY+KLE+DYGET+LYTPKFDLQTAALWLSPV+VAGAAAGVWAY+KHKQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTMLDLL+PPPP+RT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Lcy09g004980 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 147/158 (93.04%), Postives = 154/158 (97.47%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME+DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           K+IYKKLENDYGETILYTPKFDLQTA LWLSPVIVAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           LVRGVPLTPKEKQTMLDLLSPPP +RT SSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Lcy09g004980 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 146/153 (95.42%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME+DEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIYKKLENDYGET+LYTPKFDLQTAALWLSPV+VAGAAAGVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQRSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWR 154
           LVRGVPLTPKEKQTMLDLLSPPP +RT+SSWWR
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTSSSWWR 153

[Close]

BLAST of Lcy09g004980 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 4.9e-76
Identity = 145/158 (91.77%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           MESD DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEI+KKLENDYGETILYTPKFDLQTAALWLSPV+VAGAAAGVWAYSK+KQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPPPPERTTSSWWRSWRRQ 159
           +VRGVPLTP+EKQTMLDLLSPPPP+R  S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Lcy09g004980 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 211.1 bits (536), Expect = 6.6e-55
Identity = 106/156 (67.95%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIY KLE+++GET+LY PKFDLQTAALWL+PVI+AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PPERTTSSWWRSW 156
           L+RGVPLTPKE+ T+LD+L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Lcy09g004980 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 211.1 bits (536), Expect = 6.6e-55
Identity = 106/156 (67.95%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 1   MESDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 61  KEIYKKLENDYGETILYTPKFDLQTAALWLSPVIVAGAAAGVWAYSKHKQKSNVHIMALN 120
           KEIY KLE+++GET+LY PKFDLQTAALWL+PVI+AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 121 LVRGVPLTPKEKQTMLDLLSPP-PPERTTSSWWRSW 156
           L+RGVPLTPKE+ T+LD+L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

The following BLAST results are available for this feature:

BLAST of Lcy09g004980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	4.0e-65	79.61	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	4.0e-65	79.61	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	9.3e-54	67.95	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
P45405	7.7e-16	33.82	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
P45406	7.2e-14	35.51	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX...	[more]

BLAST of Lcy09g004980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZT6	1.9e-78	94.30	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]
A0A5A7TY95	1.9e-78	94.30	Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DHL6	2.5e-78	92.41	Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L351	7.3e-78	93.04	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A6J1JTI4	2.4e-76	91.77	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]

BLAST of Lcy09g004980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452301.1	4.0e-78	94.30	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]
XP_022152937.1	5.2e-78	92.41	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]
XP_004149299.1	1.5e-77	93.04	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_038904619.1	1.3e-76	95.42	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_022953979.1	4.9e-76	91.77	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]

BLAST of Lcy09g004980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	6.6e-55	67.95	cytochrome c biogenesis protein family	[more]
AT1G15220.2	6.6e-55	67.95	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 6..137 e-value: 4.9E-30 score: 103.7
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 2..82 e-value: 9.1E-21 score: 75.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..158
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 1..156
None	No IPR available	CDD	cd16378	CcmH_N	coord: 14..79 e-value: 1.38908E-26 score: 93.3622

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g004980.1	Lcy09g004980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity