Lcy09g004640 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g004640
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA exonuclease 4
Location	Chr09: 4128941 .. 4130912 (-)
RNA-Seq Expression	Lcy09g004640
Synteny	Lcy09g004640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACTATGTAGGTTTCTTTTTTAAGTTTAAATGGGGTGAGGCTCGAACCATTAACCTTGTCGAGGTTAGAGCTATGCTTAGGTTAGGGACAAACATGATATACAATTTTAAATCACCGTGTTAAAGCCATAAACTATTTGTGAGTGCCAACATAAGCTTAACTCAACTGACAAGAACTTGTACTAATAAGGTCTGTGGTTCGAATCTCTCACCTTCACGTGTTTAGCTTAAAAATTAAGTTGAATCTTATATAACGTTAAAATTTTAAATTGATATGTTATGATATATAAGTTTAATCATTTATTCATATTCTCATTAGGGCCGCTCCCAAAGCAAGAATGCAAAAGCATCTTCGCTACGAGAGGATGCAAGTTTTGCTTGGCCATCGTTGACAATTCTTATTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCAGGAGTAAATTCAGTATGAATCCTCGCCTAGTAGTTAAAGAACATGAAAATTAGTTATTTGGTTTCAAGACTTTGAATCTTTTTTTTTTTTTTTTTGGTTGTTTGAATCAGGGGCTTCTTGCTCGTTTCGCCAACCTGGGAATTCGTGACGGTTCGACCGTCATCGATAGCGGAAGAACTCGAGGTTCCGGTGCCGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGTGATGGGTCGCTGGACATCTGCGCCAAGGTCTGCCTGGTTGATGAGAATGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTAAGTAAATAAATTAAACCTTAAATTACTCTTAGGGTTGTATCTCTTTAGTCTATCTCAAAAAGTTTAATAAATTCATGAAATTTTAATGTTATTTGTCATTTTATTATTCAAAGATTTAGTCAATTTCAAGTTGGTAAAAAAAAATGGTTAGTGTAAGAGTTAAGACCTTATATATTTGTTTTAGAAGTTAATTAGATGTTCGAATCTTTATTCACACATCATTGAACTTAGTAATATTAATAATATATAATATTAGGTACGAGACGACGGGGATTCGTCCAGAACACTTTAGGGATGCAATGCTGCTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTACGTGGAAGACGATCTCAAACGTCTTCAAATCGGATATCCATCCATCATGATAAGGTAAATTCCGTTAACATCATCTGTAAAAATTAAATTTATCGTAACCTATCAACTTAAGTTTTGAATTTCATATCAGATATCATTTGATTCGAAGTTCTATCTCTACTAGGGTTTAGTTGTAGTTCTAAACATTTCTTGGGTTTCATGCATTGACCCACAGGGACACAGCAAATTATCCGCCATTAATGAAGACGAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGGTAAGCACCCTTTTAAATTAAAAACCAAACTAATTTTTGGGAAAATTTGCAAGCTTATTAAGCGCATTAAATAGCGTAGAATTCATGAAATAAAATAACATATCATTTATATGATGTGTCAAATTATAAGAATATAAGAATACTGCAACACAATAATTCCTTTTTGGTAGAACGAACGATAATATTAGTAATTAACAACGCGGATTAATTTCGCTTTTGTTATGTAGATTTGACACTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGTGAGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTGTGACCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTGAGAGGATGACCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCCAGGATTTGAGCTTCTTCTTCAATAATGGTGGATTATTATTGTTTGATGATGATTGAAG

mRNA sequence

ATGATACTATGGCCGCTCCCAAAGCAAGAATGCAAAAGCATCTTCGCTACGAGAGGATGCAAGTTTTGCTTGGCCATCGTTGACAATTCTTATTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCAGGAGTAAATTCAGGGCTTCTTGCTCGTTTCGCCAACCTGGGAATTCGTGACGGTTCGACCGTCATCGATAGCGGAAGAACTCGAGGTTCCGGTGCCGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGTGATGGGTCGCTGGACATCTGCGCCAAGGTCTGCCTGGTTGATGAGAATGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTACGAGACGACGGGGATTCGTCCAGAACACTTTAGGGATGCAATGCTGCTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTACGTGGAAGACGATCTCAAACGTCTTCAAATCGGATATCCATCCATCATGATAAGGGACACAGCAAATTATCCGCCATTAATGAAGACGAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGATTTGACACTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGTGAGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTGTGACCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTGAGAGGATGACCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCCAGGATTTGAGCTTCTTCTTCAATAATGGTGGATTATTATTGTTTGATGATGATTGAAG

Coding sequence (CDS)

ATGATACTATGGCCGCTCCCAAAGCAAGAATGCAAAAGCATCTTCGCTACGAGAGGATGCAAGTTTTGCTTGGCCATCGTTGACAATTCTTATTCACAAAGGCTCCACCAAGAAAGATGCCAATTCTCAGGAGTAAATTCAGGGCTTCTTGCTCGTTTCGCCAACCTGGGAATTCGTGACGGTTCGACCGTCATCGATAGCGGAAGAACTCGAGGTTCCGGTGCCGTGGCATTAGCTTGCAAATATGTAGGTGGCGGCGGTGATGGGTCGCTGGACATCTGCGCCAAGGTCTGCCTGGTTGATGAGAATGAAAATGTCATCTTCTATAGCTATGTCAAGCCAATAATTCCTGTTACAAATTATAGGTACGAGACGACGGGGATTCGTCCAGAACACTTTAGGGATGCAATGCTGCTGAAGCAAGTTCAGAAGAAAATTCAAGACATCCTCTACAATGGAGGTGAGAAAGCTAGGGTTCTTGTGGGTCACTACGTGGAAGACGATCTCAAACGTCTTCAAATCGGATATCCATCCATCATGATAAGGGACACAGCAAATTATCCGCCATTAATGAAGACGAGCAAGCTCTGCAATTCACTCAAGTATCTAGCTCAAGTGTATCTTGGATTTGACACTCAAAATGGGATACAAGATCCTTATGAAGATTGTGTTGTGAGCATGAGATTGTACAAGAGAATGAGATCACAAGTTCATAGGATAGAGAAGCATCCAATGGCTTGTGACCCACAAAACAAAAATAACTTTGCAGTTTGGAGGGAAAATGAGCTTGAGAGGATGACCCCAGAACAGATGTTGGAGATTTCTAGGTCTGATTATTATTGTTGGTGCATGGACTCCAGGATTTGA

Protein sequence

MILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI

Homology

[Close]

BLAST of Lcy09g004640 vs. ExPASy Swiss-Prot
Match: Q4WHF8 (RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rex4 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-21
Identity = 66/183 (36.07%), Postives = 101/183 (55.19%), Query Frame = 0


Query: 76  VALACKYVGGGGDGSLD-ICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFR 135
           VA+ C+ VG G +   D   A+V +V+ N   ++ SYV+P   +T++R   +GI P+H  
Sbjct: 117 VAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMA 176

Query: 136 DAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTS 195
           +A  L+QVQK + +IL       R+LVGH V +DL  L +G+P   IRDT+ +PP  K +
Sbjct: 177 EARSLEQVQKDVAEIL-----DGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIA 236

Query: 196 KLCN-SLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHR--IEKHPMACDPQN 255
              +  LK LA  +LG + Q+G     ED   +M LY+R +    R  ++K P+      
Sbjct: 237 GGGSPRLKILASEFLGLNIQDGAHSSVEDAKATMLLYRRDKEAFEREHLKKWPIRVVVDK 294

[Close]

BLAST of Lcy09g004640 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 69/215 (32.09%), Postives = 111/215 (51.63%), Query Frame = 0


Query: 44  GVNSGLLARFANLGIRDGSTVIDSGRTRGSG----AVALACKYVGGGGDGSLDICAKVCL 103
           G  +  +AR   LG  +GS  +   + +  G    A+AL C+ VG G  G   + A+V +
Sbjct: 209 GPEAAKIAR-KQLGQSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSI 268

Query: 104 VDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARV 163
           V++    ++  YVKP  PVT+YR   +GIRPE+ +    L+ VQK++ ++L     K R+
Sbjct: 269 VNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEML-----KGRI 328

Query: 164 LVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSKLCN-SLKYLAQVYLGFDTQNGIQD 223
           LVGH + +DLK L + +P   IRDT  Y P     K    SL+ L++  LG   Q     
Sbjct: 329 LVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKSGRPSLRLLSEKILGLQVQQAEHC 388

Query: 224 PYEDCVVSMRLYKRMRSQVHRI--EKHPMACDPQN 252
             +D   +MRLY  ++ +   +  ++ P+   P +
Sbjct: 389 SIQDAQAAMRLYVMVKKEWESMARDRRPLLTAPDH 417

[Close]

BLAST of Lcy09g004640 vs. ExPASy Swiss-Prot
Match: O94375 (RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rex4 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.0e-21
Identity = 59/166 (35.54%), Postives = 98/166 (59.04%), Query Frame = 0


Query: 76  VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTGIRPEHFRD 135
           +A+ C+ VG   D  + + A+V +V+ + +V++ +YV+P   VT++R   +G++  H RD
Sbjct: 94  IAMDCEMVGVADD--MSVLARVSIVNYHGHVVYDTYVRPKEKVTDWRTWVSGVKSFHMRD 153

Query: 136 AMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANYPPLMKTSK 195
           A   ++VQ ++  IL N     RVLVGH V +DLK L + +P  MIRDT+ +    K +K
Sbjct: 154 APSFEKVQAEVAKILDN-----RVLVGHAVHNDLKVLLLSHPRRMIRDTSRFSGYRKLAK 213

Query: 196 -LCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRI 241
                LK LA+V LG D Q+G     +D   +M LYK+++ ++  +
Sbjct: 214 GRTPGLKKLAEVILGRDIQSGQHSSVQDAQATMELYKKVKKEMDEV 252

[Close]

BLAST of Lcy09g004640 vs. ExPASy Swiss-Prot
Match: Q08237 (RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=REX4 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 6.5e-21
Identity = 59/184 (32.07%), Postives = 102/184 (55.43%), Query Frame = 0


Query: 63  TVIDSGRTRGSGA-VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 122
           T I+S +++  G  +A+ C++VG G +G     A++ +V+   +V+   +VKP   V  +
Sbjct: 108 TRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHVVLDEFVKPREKVVEW 167

Query: 123 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 182
           R   +GI+PEH ++A+  K+ QKK  DIL     + R+LVGH ++ DL+ L + +P  ++
Sbjct: 168 RTWVSGIKPEHMKNAITFKEAQKKTADIL-----EGRILVGHALKHDLEALMLSHPKSLL 227

Query: 183 RDTANYPPLMK--TSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHR 242
           RDT+ + P  K        SLK L +  L    Q G     ED   +M LYK+ +++  +
Sbjct: 228 RDTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEGEHSSVEDARATMLLYKKEKTEFEK 286

Query: 243 IEKH 244
           I ++
Sbjct: 288 IHRN 286

[Close]

BLAST of Lcy09g004640 vs. ExPASy Swiss-Prot
Match: Q6CMT3 (RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=REX4 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.5e-21
Identity = 61/175 (34.86%), Postives = 96/175 (54.86%), Query Frame = 0


Query: 69  RTRGSGA-VALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYETTG 128
           RT G G  V++ C++VG G DG     A+V +V+   NV+   +V+P  PVT++R   +G
Sbjct: 112 RTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSG 171

Query: 129 IRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMIRDTANY 188
           I+P H  +A+  +  QK++ ++L     K R+LVGH V  DL  L + +P  MIRDT+ +
Sbjct: 172 IKPHHMANAVTQEDCQKQVSNVL-----KGRILVGHSVHHDLTALMLSHPRRMIRDTSRH 231

Query: 189 PPLMK--TSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRI 241
            P  +  +     SLK L +  L  D Q+G     ED   +M LYK  + +  ++
Sbjct: 232 MPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYKSDKLEFEKL 281

[Close]

BLAST of Lcy09g004640 vs. ExPASy TrEMBL
Match: A0A6J1JZ30 (RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111489566 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.3e-146
Identity = 252/287 (87.80%), Postives = 266/287 (92.68%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK++F  RGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLAR ANLGIRDG
Sbjct: 58  LIGPLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDG 117

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           ST ID GRTRGSG VALACKYV GGGDGSLD+CAKVCL+DE+ENVIFYSYVKP IPVTNY
Sbjct: 118 STAIDGGRTRGSGPVALACKYV-GGGDGSLDVCAKVCLIDESENVIFYSYVKPTIPVTNY 177

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           RYETTGIRPEH RDAM LKQVQKKIQDILYNGGEKARVLVGH VEDDLKRLQIGYPSIMI
Sbjct: 178 RYETTGIRPEHVRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMI 237

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RD ANYPPLMKTSKLCNSLKYLAQVYLGF+ QNG+QDPYE+CV  MRLYKRMRSQVHRIE
Sbjct: 238 RDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIE 297

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            HPMA DPQNKNNFA WRE+ELERM+PEQMLEISRSDYYCWCMD RI
Sbjct: 298 HHPMASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 343

[Close]

BLAST of Lcy09g004640 vs. ExPASy TrEMBL
Match: A0A6J1FEK0 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111444794 PE=3 SV=1)

HSP 1 Score: 528.1 bits (1359), Expect = 2.3e-146
Identity = 252/287 (87.80%), Postives = 266/287 (92.68%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK++F  RGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLAR ANLGIRDG
Sbjct: 58  LIGPLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDG 117

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           ST ID GRTRGSG VALACKYV GGGDGSLD+CAKVCL+DE+ENVIFYSYVKPIIPVTNY
Sbjct: 118 STAIDGGRTRGSGPVALACKYV-GGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNY 177

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           RYE TGIRPEH RDAM LKQVQKKIQDILYNGGEKARVLVGH VEDDLKRLQIGYPSIMI
Sbjct: 178 RYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMI 237

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RD ANYPPLMKTSKLCNSLKYLAQVYLGF+ QNG+QDPYE+CV  MRLYKRMRSQVHRIE
Sbjct: 238 RDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIE 297

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            HPMA DPQNKNNFA WRE+ELERM+PEQMLEISRSDYYCWCMD RI
Sbjct: 298 HHPMASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 343

[Close]

BLAST of Lcy09g004640 vs. ExPASy TrEMBL
Match: A0A6J1BXL4 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 7.4e-145
Identity = 247/287 (86.06%), Postives = 264/287 (91.99%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK+IF TRGCKFCLAI+D+ YSQRLHQERCQFSGVNSGLLAR ANLGIRD 
Sbjct: 58  LIGPLPKQECKNIFTTRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLARLANLGIRDA 117

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           S V+D GR R +G VALACKYVGGGGDGSLDICAKVCL+DE ENVIFYSYVKPIIPVTNY
Sbjct: 118 SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNY 177

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           R+ETTGIRPEH RDAM LKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP  +I
Sbjct: 178 RFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIGYP--II 237

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RDTANYPPLMKTSKLCNSLKYLAQVYLGFD QNGIQDPYEDCV SMRLYKRMRSQVH+IE
Sbjct: 238 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIE 297

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            +PMA DPQNKNNF +WR+NELERMTPE ML+ISRSDYYCWC+D RI
Sbjct: 298 DYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI 342

[Close]

BLAST of Lcy09g004640 vs. ExPASy TrEMBL
Match: A0A6J1BZE0 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1)

HSP 1 Score: 523.1 bits (1346), Expect = 7.4e-145
Identity = 247/287 (86.06%), Postives = 264/287 (91.99%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK+IF TRGCKFCLAI+D+ YSQRLHQERCQFSGVNSGLLAR ANLGIRD 
Sbjct: 61  LIGPLPKQECKNIFTTRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLARLANLGIRDA 120

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           S V+D GR R +G VALACKYVGGGGDGSLDICAKVCL+DE ENVIFYSYVKPIIPVTNY
Sbjct: 121 SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNY 180

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           R+ETTGIRPEH RDAM LKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP  +I
Sbjct: 181 RFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIGYP--II 240

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RDTANYPPLMKTSKLCNSLKYLAQVYLGFD QNGIQDPYEDCV SMRLYKRMRSQVH+IE
Sbjct: 241 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIE 300

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            +PMA DPQNKNNF +WR+NELERMTPE ML+ISRSDYYCWC+D RI
Sbjct: 301 DYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI 345

[Close]

BLAST of Lcy09g004640 vs. ExPASy TrEMBL
Match: A0A1S3C947 (RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103498183 PE=3 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 2.2e-125
Identity = 218/298 (73.15%), Postives = 256/298 (85.91%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQEC++IFATRGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLARFANLGIRDG
Sbjct: 58  LIGPLPKQECRNIFATRGCKFCLAILDSSYSQRLHQERCQFSPVNSGLLARFANLGIRDG 117

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           ST+IDSGRTRGSGA+ALACKYVGGG DGSLDICAKVCLVDE ENVIFYSYVKPIIPVTNY
Sbjct: 118 STIIDSGRTRGSGAIALACKYVGGGSDGSLDICAKVCLVDEGENVIFYSYVKPIIPVTNY 177

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGE----------KARVLVGHYVEDDLKR 181
           RYE TG+RPEH RDAM LKQVQKKIQ+ L NG +          KAR+LVGH +++ L  
Sbjct: 178 RYEFTGVRPEHLRDAMPLKQVQKKIQEFLCNGEQMWKIRPGSTRKARILVGHGLQEYLTS 237

Query: 182 LQIGYPSIMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQ-DPYEDCVVSMRLY 241
           LQI YPSIMIRDTA YPPLMKTSKL NSL YL Q YLG++ +NG + + YE+CV +MRLY
Sbjct: 238 LQIDYPSIMIRDTAKYPPLMKTSKLSNSLHYLTQTYLGYNMENGKKSEGYEECVATMRLY 297

Query: 242 KRMRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            +M+SQVH+ E++P+A DP NK NFA+W++ ELE+MTP+Q+L+ISRSDYYCWC+D+ +
Sbjct: 298 LKMKSQVHKREEYPLASDPPNKFNFAIWKQLELEKMTPQQLLQISRSDYYCWCLDATL 355

[Close]

BLAST of Lcy09g004640 vs. NCBI nr
Match: XP_011656270.1 (RNA exonuclease 4 [Cucumis sativus])

HSP 1 Score: 534.6 bits (1376), Expect = 5.1e-148
Identity = 251/287 (87.46%), Postives = 270/287 (94.08%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK+IFATRGCKFCLAI D+SYSQRLHQERCQFS VNSGLLARFANLGIRDG
Sbjct: 58  LIGPLPKQECKNIFATRGCKFCLAIFDSSYSQRLHQERCQFSPVNSGLLARFANLGIRDG 117

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           STVIDSGRTRGSGA+ALACKYVGGG DGS+DICAKVCL+DE ENVIFYSYVKP+  VTNY
Sbjct: 118 STVIDSGRTRGSGAIALACKYVGGGSDGSMDICAKVCLIDEGENVIFYSYVKPVTAVTNY 177

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           RYETTGIRPEH RDAM +KQVQKKIQ+ILYNGGEKAR+LVG  VEDDLKRLQIGYPS MI
Sbjct: 178 RYETTGIRPEHIRDAMPVKQVQKKIQEILYNGGEKARILVGDCVEDDLKRLQIGYPSFMI 237

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RDTANYPPLMK+SKLCNSLKYLAQVYLGFD QNGIQDPYE+C+V+MRLYKRMRSQVHR E
Sbjct: 238 RDTANYPPLMKSSKLCNSLKYLAQVYLGFDLQNGIQDPYEECIVAMRLYKRMRSQVHRKE 297

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            +PMA DPQNKNNFA+WRENEL+RM+PEQMLEISRSDYYCWCMD RI
Sbjct: 298 NYPMASDPQNKNNFAIWRENELQRMSPEQMLEISRSDYYCWCMDLRI 344

[Close]

BLAST of Lcy09g004640 vs. NCBI nr
Match: XP_022993635.1 (RNA exonuclease 4-like [Cucurbita maxima])

HSP 1 Score: 528.1 bits (1359), Expect = 4.8e-146
Identity = 252/287 (87.80%), Postives = 266/287 (92.68%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK++F  RGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLAR ANLGIRDG
Sbjct: 58  LIGPLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDG 117

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           ST ID GRTRGSG VALACKYV GGGDGSLD+CAKVCL+DE+ENVIFYSYVKP IPVTNY
Sbjct: 118 STAIDGGRTRGSGPVALACKYV-GGGDGSLDVCAKVCLIDESENVIFYSYVKPTIPVTNY 177

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           RYETTGIRPEH RDAM LKQVQKKIQDILYNGGEKARVLVGH VEDDLKRLQIGYPSIMI
Sbjct: 178 RYETTGIRPEHVRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMI 237

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RD ANYPPLMKTSKLCNSLKYLAQVYLGF+ QNG+QDPYE+CV  MRLYKRMRSQVHRIE
Sbjct: 238 RDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIE 297

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            HPMA DPQNKNNFA WRE+ELERM+PEQMLEISRSDYYCWCMD RI
Sbjct: 298 HHPMASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 343

[Close]

BLAST of Lcy09g004640 vs. NCBI nr
Match: XP_022938612.1 (RNA exonuclease 4-like [Cucurbita moschata])

HSP 1 Score: 528.1 bits (1359), Expect = 4.8e-146
Identity = 252/287 (87.80%), Postives = 266/287 (92.68%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK++F  RGCKFCLAI+D+SYSQRLHQERCQFS VNSGLLAR ANLGIRDG
Sbjct: 58  LIGPLPKQECKNVFDMRGCKFCLAILDSSYSQRLHQERCQFSCVNSGLLARLANLGIRDG 117

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           ST ID GRTRGSG VALACKYV GGGDGSLD+CAKVCL+DE+ENVIFYSYVKPIIPVTNY
Sbjct: 118 STAIDGGRTRGSGPVALACKYV-GGGDGSLDVCAKVCLIDESENVIFYSYVKPIIPVTNY 177

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           RYE TGIRPEH RDAM LKQVQKKIQDILYNGGEKARVLVGH VEDDLKRLQIGYPSIMI
Sbjct: 178 RYEMTGIRPEHLRDAMPLKQVQKKIQDILYNGGEKARVLVGHCVEDDLKRLQIGYPSIMI 237

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RD ANYPPLMKTSKLCNSLKYLAQVYLGF+ QNG+QDPYE+CV  MRLYKRMRSQVHRIE
Sbjct: 238 RDIANYPPLMKTSKLCNSLKYLAQVYLGFEIQNGVQDPYEECVGGMRLYKRMRSQVHRIE 297

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            HPMA DPQNKNNFA WRE+ELERM+PEQMLEISRSDYYCWCMD RI
Sbjct: 298 HHPMASDPQNKNNFAAWRESELERMSPEQMLEISRSDYYCWCMDLRI 343

[Close]

BLAST of Lcy09g004640 vs. NCBI nr
Match: XP_022134351.1 (RNA exonuclease 4 isoform X1 [Momordica charantia])

HSP 1 Score: 523.1 bits (1346), Expect = 1.5e-144
Identity = 247/287 (86.06%), Postives = 264/287 (91.99%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK+IF TRGCKFCLAI+D+ YSQRLHQERCQFSGVNSGLLAR ANLGIRD 
Sbjct: 58  LIGPLPKQECKNIFTTRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLARLANLGIRDA 117

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           S V+D GR R +G VALACKYVGGGGDGSLDICAKVCL+DE ENVIFYSYVKPIIPVTNY
Sbjct: 118 SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNY 177

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           R+ETTGIRPEH RDAM LKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP  +I
Sbjct: 178 RFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIGYP--II 237

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RDTANYPPLMKTSKLCNSLKYLAQVYLGFD QNGIQDPYEDCV SMRLYKRMRSQVH+IE
Sbjct: 238 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIE 297

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            +PMA DPQNKNNF +WR+NELERMTPE ML+ISRSDYYCWC+D RI
Sbjct: 298 DYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI 342

[Close]

BLAST of Lcy09g004640 vs. NCBI nr
Match: XP_022134352.1 (RNA exonuclease 4 isoform X2 [Momordica charantia])

HSP 1 Score: 523.1 bits (1346), Expect = 1.5e-144
Identity = 247/287 (86.06%), Postives = 264/287 (91.99%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK+IF TRGCKFCLAI+D+ YSQRLHQERCQFSGVNSGLLAR ANLGIRD 
Sbjct: 61  LIGPLPKQECKNIFTTRGCKFCLAILDSPYSQRLHQERCQFSGVNSGLLARLANLGIRDA 120

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           S V+D GR R +G VALACKYVGGGGDGSLDICAKVCL+DE ENVIFYSYVKPIIPVTNY
Sbjct: 121 SIVVDGGRARATGTVALACKYVGGGGDGSLDICAKVCLIDETENVIFYSYVKPIIPVTNY 180

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNGGEKARVLVGHYVEDDLKRLQIGYPSIMI 181
           R+ETTGIRPEH RDAM LKQVQKKIQ+ILYNGGEKARVLVGH VEDDLKRLQIGYP  +I
Sbjct: 181 RFETTGIRPEHLRDAMPLKQVQKKIQEILYNGGEKARVLVGHGVEDDLKRLQIGYP--II 240

Query: 182 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIE 241
           RDTANYPPLMKTSKLCNSLKYLAQVYLGFD QNGIQDPYEDCV SMRLYKRMRSQVH+IE
Sbjct: 241 RDTANYPPLMKTSKLCNSLKYLAQVYLGFDIQNGIQDPYEDCVASMRLYKRMRSQVHKIE 300

Query: 242 KHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDSRI 289
            +PMA DPQNKNNF +WR+NELERMTPE ML+ISRSDYYCWC+D RI
Sbjct: 301 DYPMASDPQNKNNFGIWRQNELERMTPEHMLDISRSDYYCWCLDLRI 345

[Close]

BLAST of Lcy09g004640 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 397.1 bits (1019), Expect = 1.2e-110
Identity = 187/294 (63.61%), Postives = 231/294 (78.57%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK+IF+ RGC+FC+ I+++  S+R+HQERCQFS VNSGL  R A LG+RD 
Sbjct: 63  LIGPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSSVNSGLTTRMAALGLRD- 122

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
             +ID   +R    VAL+CK VGGG DGSLD+CA+VC+ DE++NVIF++YVKP + VT+Y
Sbjct: 123 KAMIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSY 182

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNG---------GEKARVLVGHYVEDDLKRL 181
           RYETTGIRPE+ RDAM LKQVQ+KIQ+ L NG         G KAR+LVGH ++ DL RL
Sbjct: 183 RYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRL 242

Query: 182 QIGYPSIMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKR 241
           Q+ YPS MIRDTA YPPLMKTSKL NSLKYL Q YLG+D   GIQDPYEDCV +MRLY R
Sbjct: 243 QLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTR 302

Query: 242 MRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDS 287
           MR Q H+IE +P+A D QN++N   WR++E ERM+P++ML ISRSDYYCWC+DS
Sbjct: 303 MRYQKHKIEAYPLAADAQNRSNQVAWRQSEAERMSPDEMLSISRSDYYCWCLDS 355

[Close]

BLAST of Lcy09g004640 vs. TAIR 10
Match: AT5G40310.1 (Exonuclease family protein )

HSP 1 Score: 392.1 bits (1006), Expect = 3.8e-109
Identity = 184/294 (62.59%), Postives = 228/294 (77.55%), Query Frame = 0


Query: 2   ILWPLPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDG 61
           ++ PLPKQECK+IF+ RGC+FCL I+++  ++R+HQERCQ S V SGL+ R A LG+R+ 
Sbjct: 54  LIGPLPKQECKNIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNN 113

Query: 62  STVIDSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNY 121
           ST ID   +R    VAL+CK VGGG DGSLD+CA+VC+ DE+ENV+F++YVKP IPVTNY
Sbjct: 114 ST-IDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNY 173

Query: 122 RYETTGIRPEHFRDAMLLKQVQKKIQDILYNG---------GEKARVLVGHYVEDDLKRL 181
           RYE TGIRPE+ RDAM LK  Q+K+Q+ L NG           KAR+LVGH +++ L  L
Sbjct: 174 RYEMTGIRPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSL 233

Query: 182 QIGYPSIMIRDTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKR 241
           Q+ Y S MIRDTA YPPLMK+SKL NSLKYL Q YLG+D   GIQDPYEDCV +MRLY R
Sbjct: 234 QLEYSSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTR 293

Query: 242 MRSQVHRIEKHPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMDS 287
           MR Q HR E +P+A D QN NNFA WR+NELERM+PE++L++SRSDYYCWC+DS
Sbjct: 294 MRYQKHRAEAYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLDS 346

[Close]

BLAST of Lcy09g004640 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 223.4 bits (568), Expect = 2.3e-58
Identity = 115/283 (40.64%), Postives = 170/283 (60.07%), Query Frame = 0


Query: 6   LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVI 65
           L K  CK+IF  RGC  CL I + +++   H+ +C  S               R+ S+ +
Sbjct: 71  LSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRP-----LGTSTQRNPSSSL 130

Query: 66  DSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYET 125
              R +   A+AL C+ VGGG DG++D CA VCLVD++ENVIF ++V+P++PVT+YR+E 
Sbjct: 131 AGSRLK---AMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEI 190

Query: 126 TGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIR 185
           TG+  E  +D M L+ V++++   L    N G    +LVGH +  D+  L++ YPS ++R
Sbjct: 191 TGLTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLR 250

Query: 186 DTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEK 245
           DTA Y PLMKT+ +  SLKYL + YLG+  Q G  + YEDCV +MRLYKRMR Q H    
Sbjct: 251 DTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH---- 310

Query: 246 HPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD 286
             +       N     ++++LE+M  E++ + S S+Y CWC+D
Sbjct: 311 --VCSGKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

[Close]

BLAST of Lcy09g004640 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 223.4 bits (568), Expect = 2.3e-58
Identity = 115/283 (40.64%), Postives = 170/283 (60.07%), Query Frame = 0


Query: 6   LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVI 65
           L K  CK+IF  RGC  CL I + +++   H+ +C  S               R+ S+ +
Sbjct: 71  LSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRP-----LGTSTQRNPSSSL 130

Query: 66  DSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYET 125
              R +   A+AL C+ VGGG DG++D CA VCLVD++ENVIF ++V+P++PVT+YR+E 
Sbjct: 131 AGSRLK---AMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEI 190

Query: 126 TGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIR 185
           TG+  E  +D M L+ V++++   L    N G    +LVGH +  D+  L++ YPS ++R
Sbjct: 191 TGLTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLR 250

Query: 186 DTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEK 245
           DTA Y PLMKT+ +  SLKYL + YLG+  Q G  + YEDCV +MRLYKRMR Q H    
Sbjct: 251 DTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH---- 310

Query: 246 HPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD 286
             +       N     ++++LE+M  E++ + S S+Y CWC+D
Sbjct: 311 --VCSGKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

[Close]

BLAST of Lcy09g004640 vs. TAIR 10
Match: AT2G48100.3 (Exonuclease family protein )

HSP 1 Score: 223.4 bits (568), Expect = 2.3e-58
Identity = 115/283 (40.64%), Postives = 170/283 (60.07%), Query Frame = 0


Query: 6   LPKQECKSIFATRGCKFCLAIVDNSYSQRLHQERCQFSGVNSGLLARFANLGIRDGSTVI 65
           L K  CK+IF  RGC  CL I + +++   H+ +C  S               R+ S+ +
Sbjct: 71  LSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRP-----LGTSTQRNPSSSL 130

Query: 66  DSGRTRGSGAVALACKYVGGGGDGSLDICAKVCLVDENENVIFYSYVKPIIPVTNYRYET 125
              R +   A+AL C+ VGGG DG++D CA VCLVD++ENVIF ++V+P++PVT+YR+E 
Sbjct: 131 AGSRLK---AMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEI 190

Query: 126 TGIRPEHFRDAMLLKQVQKKIQDIL---YNGGEKARVLVGHYVEDDLKRLQIGYPSIMIR 185
           TG+  E  +D M L+ V++++   L    N G    +LVGH +  D+  L++ YPS ++R
Sbjct: 191 TGLTKEDLKDGMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLR 250

Query: 186 DTANYPPLMKTSKLCNSLKYLAQVYLGFDTQNGIQDPYEDCVVSMRLYKRMRSQVHRIEK 245
           DTA Y PLMKT+ +  SLKYL + YLG+  Q G  + YEDCV +MRLYKRMR Q H    
Sbjct: 251 DTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQEH---- 310

Query: 246 HPMACDPQNKNNFAVWRENELERMTPEQMLEISRSDYYCWCMD 286
             +       N     ++++LE+M  E++ + S S+Y CWC+D
Sbjct: 311 --VCSGKAEGNGLNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

The following BLAST results are available for this feature:

BLAST of Lcy09g004640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4WHF8	1.0e-21	36.07	RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 10...	[more]
Q9GZR2	1.7e-21	32.09	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
O94375	5.0e-21	35.54	RNA exonuclease 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2848...	[more]
Q08237	6.5e-21	32.07	RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=55...	[more]
Q6CMT3	8.5e-21	34.86	RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707...	[more]

BLAST of Lcy09g004640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ30	2.3e-146	87.80	RNA exonuclease 4 OS=Cucurbita maxima OX=3661 GN=LOC111489566 PE=3 SV=1	[more]
A0A6J1FEK0	2.3e-146	87.80	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111444794 PE=3 SV=1	[more]
A0A6J1BXL4	7.4e-145	86.06	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1	[more]
A0A6J1BZE0	7.4e-145	86.06	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111006633 PE=3 SV=1	[more]
A0A1S3C947	2.2e-125	73.15	RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103498183 PE=3 SV=1	[more]

BLAST of Lcy09g004640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656270.1	5.1e-148	87.46	RNA exonuclease 4 [Cucumis sativus]	[more]
XP_022993635.1	4.8e-146	87.80	RNA exonuclease 4-like [Cucurbita maxima]	[more]
XP_022938612.1	4.8e-146	87.80	RNA exonuclease 4-like [Cucurbita moschata]	[more]
XP_022134351.1	1.5e-144	86.06	RNA exonuclease 4 isoform X1 [Momordica charantia]	[more]
XP_022134352.1	1.5e-144	86.06	RNA exonuclease 4 isoform X2 [Momordica charantia]	[more]

BLAST of Lcy09g004640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27970.1	1.2e-110	63.61	Exonuclease family protein	[more]
AT5G40310.1	3.8e-109	62.59	Exonuclease family protein	[more]
AT2G48100.1	2.3e-58	40.64	Exonuclease family protein	[more]
AT2G48100.2	2.3e-58	40.64	Exonuclease family protein	[more]
AT2G48100.3	2.3e-58	40.64	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 74..239 e-value: 7.3E-19 score: 78.7
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 91..211 e-value: 5.7E-7 score: 30.2
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 72..252 e-value: 1.3E-36 score: 127.8
None	No IPR available	PANTHER	PTHR12801:SF122	OS02G0709000 PROTEIN	coord: 3..286
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 3..286
IPR037431	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	CDD	cd06144	REX4_like	coord: 76..231 e-value: 2.96105E-72 score: 217.384
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 90..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g004640.1	Lcy09g004640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding