Lcy09g004130 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g004130
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr09: 3696982 .. 3697242 (+)
RNA-Seq Expression	Lcy09g004130
Synteny	Lcy09g004130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGTCCTAACCCATCCTACCCCCAAACCCATCACCTCGCCTCCGATTCTTTCCCCTCAAACCCAGTCTCAACCCCCATCCGCCGATCATCGTCATGTTCCGTTTTTTTATTTTTATTTTTTTAAAAAAATTAAGGATAGAAATGCTCAGATCTTGAACACTCCCCATAGTTGTCGAGGCATTGATACTCCTCGTAGATCTGGATCACTCCTCGAATTTGACGGCCACGATTTGCGCCTCCATCGTTCCATTTGTTGA

mRNA sequence

ATGCTCGTCCTAACCCATCCTACCCCCAAACCCATCACCTCGCCTCCGATTCTTTCCCCTCAAACCCAGTCTCAACCCCCATCCGCCGATCATCGTCATGATAGAAATGCTCAGATCTTGAACACTCCCCATAGTTGTCGAGGCATTGATACTCCTCGTAGATCTGGATCACTCCTCGAATTTGACGGCCACGATTTGCGCCTCCATCGTTCCATTTGTTGA

Coding sequence (CDS)

ATGCTCGTCCTAACCCATCCTACCCCCAAACCCATCACCTCGCCTCCGATTCTTTCCCCTCAAACCCAGTCTCAACCCCCATCCGCCGATCATCGTCATGATAGAAATGCTCAGATCTTGAACACTCCCCATAGTTGTCGAGGCATTGATACTCCTCGTAGATCTGGATCACTCCTCGAATTTGACGGCCACGATTTGCGCCTCCATCGTTCCATTTGTTGA

Protein sequence

MLVLTHPTPKPITSPPILSPQTQSQPPSADHRHDRNAQILNTPHSCRGIDTPRRSGSLLEFDGHDLRLHRSIC

Homology

[Close]

BLAST of Lcy09g004130 vs. ExPASy TrEMBL
Match: A0A6J1JEE6 (uncharacterized protein LOC111486146 OS=Cucurbita maxima OX=3661 GN=LOC111486146 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MLVLTHPTPKPITSPPILSPQTQSQPPSADHRHDRNAQILNTPHSCRGIDT 52
          MLVLT PTPKPIT PP+LSPQ QS+P SADHR     ++ + P S  G D+
Sbjct: 53 MLVLTRPTPKPITLPPVLSPQPQSRPSSADHR-----ELRDRPRSQSGSDS 98

[Close]

BLAST of Lcy09g004130 vs. ExPASy TrEMBL
Match: A0A6J1ERQ4 (uncharacterized protein LOC111437190 OS=Cucurbita moschata OX=3662 GN=LOC111437190 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-04
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MLVLTHPTPKPITSPPILSPQTQSQPPSADHRHDRNAQILNTPHSCRGIDT 52
          MLVLT PTPKPIT PP+LSPQ QS+P SADHR     ++ + P S  G D+
Sbjct: 52 MLVLTRPTPKPITLPPVLSPQPQSRPSSADHR-----ELPDRPRSQPGSDS 97

[Close]

BLAST of Lcy09g004130 vs. NCBI nr
Match: XP_022988942.1 (uncharacterized protein LOC111486146 [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-04
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MLVLTHPTPKPITSPPILSPQTQSQPPSADHRHDRNAQILNTPHSCRGIDT 52
          MLVLT PTPKPIT PP+LSPQ QS+P SADHR     ++ + P S  G D+
Sbjct: 53 MLVLTRPTPKPITLPPVLSPQPQSRPSSADHR-----ELRDRPRSQSGSDS 98

[Close]

BLAST of Lcy09g004130 vs. NCBI nr
Match: XP_038888443.1 (translation initiation factor IF-2 isoform X1 [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1  MLVLTHPTPKPITSPPILSPQTQSQPPSADHR 33
          MLVLT PTPKPITSPP LSPQ Q +PPSADHR
Sbjct: 66 MLVLTRPTPKPITSPPPLSPQPQYRPPSADHR 97

[Close]

BLAST of Lcy09g004130 vs. NCBI nr
Match: XP_022930822.1 (uncharacterized protein LOC111437190 [Cucurbita moschata])

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-04
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MLVLTHPTPKPITSPPILSPQTQSQPPSADHRHDRNAQILNTPHSCRGIDT 52
          MLVLT PTPKPIT PP+LSPQ QS+P SADHR     ++ + P S  G D+
Sbjct: 52 MLVLTRPTPKPITLPPVLSPQPQSRPSSADHR-----ELPDRPRSQPGSDS 97

[Close]

BLAST of Lcy09g004130 vs. NCBI nr
Match: XP_038888444.1 (putative protein TPRXL isoform X2 [Benincasa hispida])

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-04
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1  MLVLTHPTPKPITSPPILSPQTQSQPPSADHR 33
          MLVLT PTPKPITSPP LSPQ Q +PPSADHR
Sbjct: 66 MLVLTRPTPKPITSPPPLSPQPQYRPPSADHR 97

The following BLAST results are available for this feature:

BLAST of Lcy09g004130 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g004130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEE6	2.5e-04	58.82	uncharacterized protein LOC111486146 OS=Cucurbita maxima OX=3661 GN=LOC111486146...	[more]
A0A6J1ERQ4	4.2e-04	58.82	uncharacterized protein LOC111437190 OS=Cucurbita moschata OX=3662 GN=LOC1114371...	[more]

BLAST of Lcy09g004130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988942.1	5.1e-04	58.82	uncharacterized protein LOC111486146 [Cucurbita maxima]	[more]
XP_038888443.1	8.7e-04	84.38	translation initiation factor IF-2 isoform X1 [Benincasa hispida]	[more]
XP_022930822.1	8.7e-04	58.82	uncharacterized protein LOC111437190 [Cucurbita moschata]	[more]
XP_038888444.1	8.7e-04	84.38	putative protein TPRXL isoform X2 [Benincasa hispida]	[more]

BLAST of Lcy09g004130 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g004130.1	Lcy09g004130.1	mRNA