Lcy09g004100 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g004100
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	low-molecular-weight cysteine-rich 25
Location	Chr09: 3652422 .. 3653251 (-)
RNA-Seq Expression	Lcy09g004100
Synteny	Lcy09g004100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAAGTTTAGTTGCTCCGTCTTTTTCCTCGTCCTCGTTTTCTCAGGTTTGTTTTCTACGTATCTTTATATTTGGTCTTTCTCCGGAAAAAGTTATTAAATATTGCATACTCGTATCAAATAGCCTTAAATCTTTTTAAATTTTTAATTTTACTCTTAGAAAAGCTATCGATTGTGTTATATAGAGAAATTAATGTTAAATTTTTTTAACAATGTTGATGTATCATTATATCAGAGTTTCAATATGGTATGATGTGTGTCCAAATGTGTGAAAACAACCATAATTGAATGACACATTAGCTTTACATTAAAAATTAAAACATTTTTTAGAAAACTATTCTTAATTCTCATTGGCCCAATTGAGTGCTTTTAATTCAGTAAGGTGAAATTTTTAATTTTATTTTATTTCGCTCAACTTAACATTTGTTTTAAAACTTTCTCTTTACCAACTCCGACATTGATCAATTGGTTAATTAAAGCACTAAAATCTCGGTCGAAAGGTATTTGAATCTTACCCCCACATGCAGTTGAATTATTAAAGGAAAAAAAAAATACTTTAACACTTGAAAAAACATATACATGTAGTAAGCTAGAGACTTTGATATAATATTGAAAAATTATGCAGTTGCACTGATGGTGCCTGAAGCAGCTCATGCAAACCCCTGCCATGAGAAGTTGTACGAAGATGCATGCAAACATTCTGAATGTCGTCAAAAGTGCGAAGAGAAGTACCCTAATAATTCAACATTTGAATGCGTTCCAAATCCTCAAGTCCCCAATAGCCATTCTTGCTATTGCTTCTTCACTTGCCCTGGACGTGGAAACTGA

mRNA sequence

ATGACAAAGTTTAGTTGCTCCGTCTTTTTCCTCGTCCTCGTTTTCTCAGTTGCACTGATGGTGCCTGAAGCAGCTCATGCAAACCCCTGCCATGAGAAGTTGTACGAAGATGCATGCAAACATTCTGAATGTCGTCAAAAGTGCGAAGAGAAGTACCCTAATAATTCAACATTTGAATGCGTTCCAAATCCTCAAGTCCCCAATAGCCATTCTTGCTATTGCTTCTTCACTTGCCCTGGACGTGGAAACTGA

Coding sequence (CDS)

ATGACAAAGTTTAGTTGCTCCGTCTTTTTCCTCGTCCTCGTTTTCTCAGTTGCACTGATGGTGCCTGAAGCAGCTCATGCAAACCCCTGCCATGAGAAGTTGTACGAAGATGCATGCAAACATTCTGAATGTCGTCAAAAGTGCGAAGAGAAGTACCCTAATAATTCAACATTTGAATGCGTTCCAAATCCTCAAGTCCCCAATAGCCATTCTTGCTATTGCTTCTTCACTTGCCCTGGACGTGGAAACTGA

Protein sequence

MTKFSCSVFFLVLVFSVALMVPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTFECVPNPQVPNSHSCYCFFTCPGRGN

Homology

[Close]

BLAST of Lcy09g004100 vs. ExPASy Swiss-Prot
Match: P82739 (Defensin-like protein 159 OS=Arabidopsis thaliana OX=3702 GN=LCR25 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.5e-05
Identity = 32/80 (40.00%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 1  MTKFSCSVFF-LVLVFSVALMVPEAAHANPCHEKLYE-DACKHSECRQKCEEKYPNNSTF 60
          M K SCS F  L+LVFS  LMV E A    CH  + +  AC  S+CR  C   Y  N   
Sbjct: 1  MAKLSCSYFLVLILVFSAFLMV-ERAEGKRCHLTIDKATACSLSDCRLSCYSGY--NGVG 60

Query: 61 ECVPNPQVPNSHSCYCFFTC 79
          +C  +P+V    +C C + C
Sbjct: 61 KCFDDPKVAGPSNCGCIYNC 77

[Close]

BLAST of Lcy09g004100 vs. ExPASy Swiss-Prot
Match: Q9M0F2 (Putative defensin-like protein 160 OS=Arabidopsis thaliana OX=3702 GN=LCR26 PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 9.3e-05
Identity = 31/80 (38.75%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 1  MTKFSCSVFF-LVLVFSVALMVPEAAHANPCHEKLYE-DACKHSECRQKCEEKYPNNSTF 60
          M K SCS FF L+LVFS  LMV E      CH  + + + C   +CR  C   Y  N   
Sbjct: 1  MAKLSCSYFFILMLVFSALLMV-ECDEGKRCHTTIDKGNFCDLVDCRLSCFSGY--NGVG 60

Query: 61 ECVPNPQVPNSHSCYCFFTC 79
          +C  +P+VP   +C C + C
Sbjct: 61 KCFDDPKVPGRSNCGCLYNC 77

[Close]

BLAST of Lcy09g004100 vs. ExPASy TrEMBL
Match: A0A6J1EAA9 (putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.2e-20
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MTKFSCSVFFLVLVFSVALMVPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTFEC 60
          M KF C + FL+LV SVALM+PEAA A+PCHE+LYE  C+ S CR++CEEKY + STFEC
Sbjct: 1  MAKFCCPLLFLLLVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKY-STSTFEC 60

Query: 61 VPNPQVPNSHSCYCFFTCP 80
          VPNP  P   +C CFF CP
Sbjct: 61 VPNPLHPPHVACLCFFDCP 78

[Close]

BLAST of Lcy09g004100 vs. ExPASy TrEMBL
Match: A0A6J1JQS7 (putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MTKFSCSVFFLVLVFSVALMVPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTFEC 60
          M KF C + FL+LV S ALM+PEAA A+PCHE+LYE  C+ S CR++CEEKY + STFEC
Sbjct: 1  MAKFCCPLLFLLLVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKY-STSTFEC 60

Query: 61 VPNPQVPNSHSCYCFFTCP 80
          VPNP  P   +C CFF CP
Sbjct: 61 VPNPLHPPHIACLCFFDCP 78

[Close]

BLAST of Lcy09g004100 vs. ExPASy TrEMBL
Match: A0A0A0KU45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.3e-11
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 1  MTKFSCSVFFL-VLVFSVALMVPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTFE 60
          M KFSCS+FF+   + S A ++P    A  C  KLY D C   +C QKC +KYPN+S+ E
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLY-DGCLPKDCTQKCSDKYPNSSS-E 60

Query: 61 CVPNPQVPNSHSCYCFFTC 79
          CV  P +P  +SCYCF+ C
Sbjct: 61 CVAVPPIPFHYSCYCFYDC 77

[Close]

BLAST of Lcy09g004100 vs. ExPASy TrEMBL
Match: A0A0A0KS76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MTKFSCSVFFLV-LVFSVALM-VPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTF 60
          M++ S S FF+V L+ SVA M +P+ A+A  C +KLY+  C   EC+Q+C  KYPN+S+ 
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVPNPQVPNSHSCYCFFTC 79
          +C+  P +P  ++C CF+ C
Sbjct: 61 QCLSLPPIPFHNACLCFYNC 80

[Close]

BLAST of Lcy09g004100 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 1  MTK-FSCSVFFLVLVFSVALM-VPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTF 60
          MTK +S  +  +VL+ +VA++ +P+ A A  C + LY   C  ++C QKC EK+ + ++ 
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKH-HEASR 60

Query: 61 ECVPNPQVPNSHSCYCFFTC 79
          +C+P       ++CYCF+TC
Sbjct: 61 QCIPTDPDQTIYACYCFYTC 79

[Close]

BLAST of Lcy09g004100 vs. NCBI nr
Match: XP_022923678.1 (putative defensin-like protein 129 [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 50/79 (63.29%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 1  MTKFSCSVFFLVLVFSVALMVPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTFEC 60
          M KF C + FL+LV SVALM+PEAA A+PCHE+LYE  C+ S CR++CEEKY + STFEC
Sbjct: 1  MAKFCCPLLFLLLVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKY-STSTFEC 60

Query: 61 VPNPQVPNSHSCYCFFTCP 80
          VPNP  P   +C CFF CP
Sbjct: 61 VPNPLHPPHVACLCFFDCP 78

[Close]

BLAST of Lcy09g004100 vs. NCBI nr
Match: XP_022990690.1 (putative defensin-like protein 129 [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 4.9e-19
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 1  MTKFSCSVFFLVLVFSVALMVPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTFEC 60
          M KF C + FL+LV S ALM+PEAA A+PCHE+LYE  C+ S CR++CEEKY + STFEC
Sbjct: 1  MAKFCCPLLFLLLVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKY-STSTFEC 60

Query: 61 VPNPQVPNSHSCYCFFTCP 80
          VPNP  P   +C CFF CP
Sbjct: 61 VPNPLHPPHIACLCFFDCP 78

[Close]

BLAST of Lcy09g004100 vs. NCBI nr
Match: KGN52439.1 (hypothetical protein Csa_009048 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 1  MTKFSCSVFFL-VLVFSVALMVPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTFE 60
          M KFSCS+FF+   + S A ++P    A  C  KLY D C   +C QKC +KYPN+S+ E
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLY-DGCLPKDCTQKCSDKYPNSSS-E 60

Query: 61 CVPNPQVPNSHSCYCFFTC 79
          CV  P +P  +SCYCF+ C
Sbjct: 61 CVAVPPIPFHYSCYCFYDC 77

[Close]

BLAST of Lcy09g004100 vs. NCBI nr
Match: KGN52438.1 (hypothetical protein Csa_008032 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MTKFSCSVFFLV-LVFSVALM-VPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTF 60
          M++ S S FF+V L+ SVA M +P+ A+A  C +KLY+  C   EC+Q+C  KYPN+S+ 
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVPNPQVPNSHSCYCFFTC 79
          +C+  P +P  ++C CF+ C
Sbjct: 61 QCLSLPPIPFHNACLCFYNC 80

[Close]

BLAST of Lcy09g004100 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 1  MTK-FSCSVFFLVLVFSVALM-VPEAAHANPCHEKLYEDACKHSECRQKCEEKYPNNSTF 60
          MTK +S  +  +VL+ +VA++ +P+ A A  C + LY   C  ++C QKC EK+ + ++ 
Sbjct: 1  MTKLYSSWILTIVLIIAVAMISIPQGALAARCQDILYNSGCTLADCGQKCWEKH-HEASR 60

Query: 61 ECVPNPQVPNSHSCYCFFTC 79
          +C+P       ++CYCF+TC
Sbjct: 61 QCIPTDPDQTIYACYCFYTC 79

[Close]

BLAST of Lcy09g004100 vs. TAIR 10
Match: AT4G29305.1 (low-molecular-weight cysteine-rich 25 )

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-06
Identity = 32/80 (40.00%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 1  MTKFSCSVFF-LVLVFSVALMVPEAAHANPCHEKLYE-DACKHSECRQKCEEKYPNNSTF 60
          M K SCS F  L+LVFS  LMV E A    CH  + +  AC  S+CR  C   Y  N   
Sbjct: 1  MAKLSCSYFLVLILVFSAFLMV-ERAEGKRCHLTIDKATACSLSDCRLSCYSGY--NGVG 60

Query: 61 ECVPNPQVPNSHSCYCFFTC 79
          +C  +P+V    +C C + C
Sbjct: 61 KCFDDPKVAGPSNCGCIYNC 77

[Close]

BLAST of Lcy09g004100 vs. TAIR 10
Match: AT4G29290.1 (low-molecular-weight cysteine-rich 26 )

HSP 1 Score: 47.4 bits (111), Expect = 6.6e-06
Identity = 31/80 (38.75%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 1  MTKFSCSVFF-LVLVFSVALMVPEAAHANPCHEKLYE-DACKHSECRQKCEEKYPNNSTF 60
          M K SCS FF L+LVFS  LMV E      CH  + + + C   +CR  C   Y  N   
Sbjct: 1  MAKLSCSYFFILMLVFSALLMV-ECDEGKRCHTTIDKGNFCDLVDCRLSCFSGY--NGVG 60

Query: 61 ECVPNPQVPNSHSCYCFFTC 79
          +C  +P+VP   +C C + C
Sbjct: 61 KCFDDPKVPGRSNCGCLYNC 77

The following BLAST results are available for this feature:

BLAST of Lcy09g004100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82739	5.5e-05	40.00	Defensin-like protein 159 OS=Arabidopsis thaliana OX=3702 GN=LCR25 PE=3 SV=1	[more]
Q9M0F2	9.3e-05	38.75	Putative defensin-like protein 160 OS=Arabidopsis thaliana OX=3702 GN=LCR26 PE=3...	[more]

BLAST of Lcy09g004100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EAA9	8.2e-20	63.29	putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316...	[more]
A0A6J1JQS7	2.4e-19	62.03	putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 P...	[more]
A0A0A0KU45	5.3e-11	48.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1	[more]
A0A0A0KS76	1.3e-09	43.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1	[more]
A0A0A0LVZ5	7.4e-05	36.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1	[more]

BLAST of Lcy09g004100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923678.1	1.7e-19	63.29	putative defensin-like protein 129 [Cucurbita moschata]	[more]
XP_022990690.1	4.9e-19	62.03	putative defensin-like protein 129 [Cucurbita maxima]	[more]
KGN52439.1	1.1e-10	48.10	hypothetical protein Csa_009048 [Cucumis sativus]	[more]
KGN52438.1	2.7e-09	43.75	hypothetical protein Csa_008032 [Cucumis sativus]	[more]
KGN64987.1	1.5e-04	36.25	hypothetical protein Csa_022748 [Cucumis sativus]	[more]

BLAST of Lcy09g004100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29305.1	3.9e-06	40.00	low-molecular-weight cysteine-rich 25	[more]
AT4G29290.1	6.6e-06	38.75	low-molecular-weight cysteine-rich 26	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 26..78 e-value: 7.5E-8 score: 32.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g004100.1	Lcy09g004100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044419	biological process involved in interspecies interaction between organisms