Lcy09g003380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g003380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S19
Location	Chr09: 2949391 .. 2951146 (+)
RNA-Seq Expression	Lcy09g003380
Synteny	Lcy09g003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCGCGCGATCATCTGCAGTTGCTCGACCATGGCGACGGCAAGGACTGTGAAAGACGTCTCTCCTCACGAATTTGTGAAGGCCTATGCGGCTCATCTTAAGAGATCCGGAAAGGTATTGATTTTGTTGATTTGGCGGCTAACAGAAGTTTAATGTGGATTGGAGAAAGTCTTCTAGGATGTCGATTTCGATAATGGAATGAAGCATAGACTCTGTTTTGGAGGGGTGGGCTCGTTTGTGTGTAACTTGACCTGTTTTTCAGCTTCTGCTTGCTAGTTTTTGCAGGTTTTAGGGTTTCGGTTGATCCTGTTTTTGTCTATGTTTAAACCTCAATGTGCTTCTGATTTATATGTCTCACTTTCTAATTCTTTTGGTGAAGATTTCGTCGTTACCAGTCTAGTTGGTTGCGTTAACACGCACGGTTTGTATATGTCTGTTCTGGTTATCTGTATTTTCTATTGTTACTTCTGGCCTTTGCTATTGTACTACTACTTGCCCCTGAGCGTTTTTGGAATCTAATTGATTTTGTGGATATGTTCTTCGTCTAAACCATTTTGTGATTTGAGATTTTAAACTTTTTGGAATCTCCATATTTCGGTTAGCTGTTTTTAAATCTCAAAGCTATATGAATAGTTGACATTAAGTTATTTATTTGTTATAACTTTCTTCATTATATGTTTCTTATTCGCCAACAGGTTGAACTTCCCCCATGGACGGATATAGTTAAGACTGCAAGATTCAAGGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTTAGAGCTGGTCAGTCCCCTCTTATCGTCCATTTGTTTTCTATGTATTCACTTCGCAATAAAACCCACTTAAAGAGATTGCTGCTATTATGCATTTAATGTTTACTGCTCTCGTGGTCTTATGATTACTTTTTCAAACTTCTTCAGCATCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTTGGTGTGGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGAGGAATGGTAGTCGCCCTCCTCACTTCTGTGAAAGCAGTGGTGCAATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCTAAGGGGTTGGTGCAAAACTCTTATAGCTTTATTAGCCCGTACATCTGATGTGTTCCAAGCTTAATGTCAACCATTTGATACAACCCATCTTTGTTTTTTGCAAGTCATTTGATCCAAATTTATGATTTCATCTGACTTTGGTTAGTGTTGATTGATGTCGTTTTCTCTCTGGATGTGTTTGCAGCGGCCGGAGAATCACCTCAAGTGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGATTGAATAATAGAGATTTGTGCTTTTGCTGATGAGATACCACCGTGAAGATTTTGGAGTAAGCTGTTGAAAGATTCGGATGAAGATAAGCTCACTCAAGTTTTCATGAGTTTTGGATGGTCTAAAGTTTATTTTCATTTCCTTGGTCATTATTTATGGGTTTTTAGGATGAAATATGTTTTTCAATATTATCAACAGTAGCCTGGATAATGCTTAGCAACGGACCTTTTGTAGTAATTTTTGAGATATCATATCATAGAGTTTGTCCACTTATTATTTCCGTTTGTCCTGTCGTAATTTATCTAATGTTTGGACATGAACCTTTTAAAACGTAAATTTTCGAATGATCTTTGTGTGCTTACTGATTAAAAATGGAACTTATGCCATTTGAGCATTAA

mRNA sequence

CTTTCGCGCGATCATCTGCAGTTGCTCGACCATGGCGACGGCAAGGACTGTGAAAGACGTCTCTCCTCACGAATTTGTGAAGGCCTATGCGGCTCATCTTAAGAGATCCGGAAAGGTTGAACTTCCCCCATGGACGGATATAGTTAAGACTGCAAGATTCAAGGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTTAGAGCTGCATCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTTGGTGTGGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGAGGAATGGTAGTCGCCCTCCTCACTTCTGTGAAAGCAGTGGTGCAATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCTAAGGGCGGCCGGAGAATCACCTCAAGTGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGATTGAATAATAGAGATTTGTGCTTTTGCTGATGAGATACCACCGTGAAGATTTTGGAGTAAGCTGTTGAAAGATTCGGATGAAGATAAGCTCACTCAAGTTTTCATGAGTTTTGGATGGTCTAAAGTTTATTTTCATTTCCTTGGTCATTATTTATGGGTTTTTAGGATGAAATATGTTTTTCAATATTATCAACAGTAGCCTGGATAATGCTTAGCAACGGACCTTTTGTAGTAATTTTTGAGATATCATATCATAGAGTTTGTCCACTTATTATTTCCGTTTGTCCTGTCGTAATTTATCTAATGTTTGGACATGAACCTTTTAAAACGTAAATTTTCGAATGATCTTTGTGTGCTTACTGATTAAAAATGGAACTTATGCCATTTGAGCATTAA

Coding sequence (CDS)

ATGGCGACGGCAAGGACTGTGAAAGACGTCTCTCCTCACGAATTTGTGAAGGCCTATGCGGCTCATCTTAAGAGATCCGGAAAGGTTGAACTTCCCCCATGGACGGATATAGTTAAGACTGCAAGATTCAAGGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTTAGAGCTGCATCCATGGCTAGGAAAATCTATTTGAGGGGAGGTCTTGGTGTGGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGAGGAATGGTAGTCGCCCTCCTCACTTCTGTGAAAGCAGTGGTGCAATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAACATTGTTGATGTTGATCCTAAGGGCGGCCGGAGAATCACCTCAAGTGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA

Protein sequence

MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Homology

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BLAST of Lcy09g003380 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-69
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of Lcy09g003380 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-69
Identity = 121/143 (84.62%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of Lcy09g003380 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.7e-67
Identity = 120/139 (86.33%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]

BLAST of Lcy09g003380 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.3e-64
Identity = 114/140 (81.43%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 2   ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASM 61
           +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGG 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQQLQ+M I+DVDPKGG
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 142
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

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BLAST of Lcy09g003380 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.4e-46
Identity = 77/134 (57.46%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGGRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ L+ + IV+ DP GGRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 140
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]

BLAST of Lcy09g003380 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.8e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lcy09g003380 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.8e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lcy09g003380 vs. ExPASy TrEMBL
Match: A0A6J1JTL0 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.2e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lcy09g003380 vs. ExPASy TrEMBL
Match: A0A6J1EBL3 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.2e-76
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lcy09g003380 vs. ExPASy TrEMBL
Match: A0A6J1JX06 (40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.4e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lcy09g003380 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 294.3 bits (752), Expect = 5.8e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 542 MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 601

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 602 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 661

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 662 GRRITSSGRRDLDQVAGRIVVAP 684

[Close]

BLAST of Lcy09g003380 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 5.8e-76
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lcy09g003380 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lcy09g003380 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo] >KAG7016113.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 2.9e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]

BLAST of Lcy09g003380 vs. NCBI nr
Match: KAG6578553.1 (40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.0 bits (746), Expect = 2.9e-75
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 40  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 99

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG
Sbjct: 100 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 159

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 160 GRKITSSGRRDLDQVAGRIVVAP 182

[Close]

BLAST of Lcy09g003380 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 261.9 bits (668), Expect = 3.0e-70
Identity = 122/142 (85.92%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQQLQ MNIVD+D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 143
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]

BLAST of Lcy09g003380 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-70
Identity = 121/143 (84.62%), Postives = 134/143 (93.71%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ MNIV++D KG
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 144
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]

BLAST of Lcy09g003380 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-68
Identity = 120/139 (86.33%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQQL+ M+IV++D KG
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 140
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:

BLAST of Lcy09g003380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNP8	4.2e-69	85.92	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]
Q9SGA6	5.4e-69	84.62	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9LF30	1.7e-67	86.33	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
P40978	5.3e-64	81.43	40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=...	[more]
Q94613	8.4e-46	57.46	40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1	[more]

BLAST of Lcy09g003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTW8	2.8e-76	100.00	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=...	[more]
A0A6J1H7M6	2.8e-76	100.00	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P...	[more]
A0A6J1JTL0	6.2e-76	99.30	40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=...	[more]
A0A6J1EBL3	6.2e-76	99.30	40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 P...	[more]
A0A6J1JX06	1.4e-75	98.60	40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=...	[more]

BLAST of Lcy09g003380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593129.1	5.8e-76	100.00	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]
XP_022954406.1	5.8e-76	100.00	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso...	[more]
XP_022923365.1	1.3e-75	99.30	40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso...	[more]
XP_022938991.1	2.9e-75	98.60	40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p...	[more]
KAG6578553.1	2.9e-75	98.60	40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy09g003380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61170.1	3.0e-70	85.92	Ribosomal protein S19e family protein	[more]
AT3G02080.1	3.9e-70	84.62	Ribosomal protein S19e family protein	[more]
AT5G15520.1	1.2e-68	86.33	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001266	Ribosomal protein S19e	SMART	SM01413	Ribosomal_S19e_2	coord: 6..142 e-value: 1.9E-85 score: 299.9
IPR001266	Ribosomal protein S19e	PFAM	PF01090	Ribosomal_S19e	coord: 6..140 e-value: 1.2E-56 score: 190.2
IPR001266	Ribosomal protein S19e	PANTHER	PTHR11710	40S RIBOSOMAL PROTEIN S19	coord: 3..142
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..142 e-value: 1.6E-71 score: 241.2
None	No IPR available	PANTHER	PTHR11710:SF20	40S RIBOSOMAL PROTEIN S19-3	coord: 3..142
IPR018277	Ribosomal protein S19e, conserved site	PROSITE	PS00628	RIBOSOMAL_S19E	coord: 90..109
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 6..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g003380.1	Lcy09g003380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome