Lcy09g003160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g003160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ultraviolet-B receptor UVR8
Location	Chr09: 2697268 .. 2698776 (+)
RNA-Seq Expression	Lcy09g003160
Synteny	Lcy09g003160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGAAGTCAGAACTCAAACACATTGAAAAAAAAATCCATTGCAGAATTCGACCAAATTAAACTCCTTAGTGGACTGTTTTTGATTTTCAACTATGTTTTCAAGGGTCTGGACTTCTTGTTTTTTATAAAAAGATCAAATTGACAATTCTGTAATTTATTGAAATCCCATGGGTTAGCTAATAAGGCTTGAGACACCAATCGTTTGAAGCTTGAAAGATTGATTAACGTACAACATTATAGAAGATAAATTAACAATAAGCTCTAGCCTTTCATCTTCAAATGTTAGGTAACCAAGATTAGCAATAGAAACTAGGAATTTCTAAATGGGGGCATGTTCGTCCTCTAAACCCCAGTGTGATGCATCATAATAACAATGGCTCTTGAATTCAAACAGGTGAAATTATCAAGTGCAAATGATTTTGGTCAACTGGGCGATGGAACTGAGGAAAAGAGCAAAGAACCAAAGAAAGTGAAGCAATTGCAAGCTAAGTTTGTAAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTACAGAACCTCGTGAGAATGATGGCTCCATTTCAACTAGTTGACTCTGGATTTGGGGACAAAATCAGGCTTTAATTTATTTGTTTTAAATGTTGATATTCTTTTATAAACTTCTCTGCATTTTCAGCTACAACTCTCTTTTCACGGGATCCAATTTGCCTTGCTTATTTTGGTGAGCCTTCACACCAAAAACGGTATGTATCTAACGTTTAGTAGGTGAATATCACACATCTATCTTGTATATATTTAAAATTTTTAAAATGTTATTAATTTATTAGTACTTTTTCACTTTTTCTTCTCTCTTTTATTTTATTGTACCAATACTGAGCCTAGTTAATGTATTTAATCAGTCCTCTCATTTATTCTATTCCATTCTTGCATCTTCCTCTATGTGAGAGGCGAGTGAGGCATCCATCATTTTGACCACCCTTGGGAAGACTTTATCTTATTTGCTCAAAAAAAATTCACAGTATCCTAAGATCCTTGGCTTCAACTAATTCAATGTACTTGCTGTGTCGTTAATTTGTTTCTCTTCTCTATGTTGAAGCTCCTCTAGGATTCAACAGTATTGTGCGATAAAATAGAACTGTCTTTGGCTAATATAGAATTTAATGTTGAATTAACTAATTTTTTATTTTAGTGAAGTTGATTTCTACTCGTATACATGTGGTGATGCTACCGTATATTGGAAATCTATCCTACTAAGTACTAACTGAGTTGGAAGTTGGAGAGAACCTTGAGTTTTTATCTAGTTTCCTGCCACCTCAATAATAATACAATCCCTATTCTGGTTGACCAGGCTACAATGATTATGGTCAGCTAGGCAGGGGTGTTACTTCCGAAGGTCTACAAGGAGCTCGCATTATAAGTGCTTATGCAAAGTTCATTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGGTGAGGTGTAA

mRNA sequence

TCCGAAGTCAGAACTCAAACACATTGAAAAAAAAATCCATTGCAGAATTCGACCAAATTAAACTCCTTAGTGGACTGTTTTTGATTTTCAACTATGTTTTCAAGGGTCTGGACTTCTTGTTTTTTATAAAAAGATCAAATTGACAATTCTGTAATTTATTGAAATCCCATGGGTTAGCTAATAAGGCTTGAGACACCAATCGTTTGAAGCTTGAAAGATTGATTAACGTACAACATTATAGAAGATAAATTAACAATAAGCTCTAGCCTTTCATCTTCAAATGTTAGGTAACCAAGATTAGCAATAGAAACTAGGAATTTCTAAATGGGGGCATGTTCGTCCTCTAAACCCCAGTGTGATGCATCATAATAACAATGGCTCTTGAATTCAAACAGGTGAAATTATCAAGTGCAAATGATTTTGGTCAACTGGGCGATGGAACTGAGGAAAAGAGCAAAGAACCAAAGAAAGTGAAGCAATTGCAAGCTAAGTTTGTAAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTACAGAACCTCCTACAACTCTCTTTTCACGGGATCCAATTTGCCTTGCTTATTTTGGCTACAATGATTATGGTCAGCTAGGCAGGGGTGTTACTTCCGAAGGTCTACAAGGAGCTCGCATTATAAGTGCTTATGCAAAGTTCATTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGGTGAGGTGTAA

Coding sequence (CDS)

ATGGCTCTTGAATTCAAACAGGTGAAATTATCAAGTGCAAATGATTTTGGTCAACTGGGCGATGGAACTGAGGAAAAGAGCAAAGAACCAAAGAAAGTGAAGCAATTGCAAGCTAAGTTTGTAAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTACAGAACCTCCTACAACTCTCTTTTCACGGGATCCAATTTGCCTTGCTTATTTTGGCTACAATGATTATGGTCAGCTAGGCAGGGGTGTTACTTCCGAAGGTCTACAAGGAGCTCGCATTATAAGTGCTTATGCAAAGTTCATTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGGTGAGGTGTAA

Protein sequence

MALEFKQVKLSSANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAYFGYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISENGEV

Homology

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BLAST of Lcy09g003160 vs. ExPASy Swiss-Prot
Match: Q15751 (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens OX=9606 GN=HERC1 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.4e-07
Identity = 36/116 (31.03%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 15   DFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAYFGY 74
            D+G+LG G  ++ + P++++ LQ + V  +SCG   +A +T             L  FG 
Sbjct: 4110 DYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK---------LFTFGN 4169

Query: 75   NDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISENGEV 131
             DYG+LG G TS      R+          A E  +I +V+CG  H+ A+S +G +
Sbjct: 4170 GDYGRLGLGNTSNKKLPERV---------TALEGYQIGQVACGLNHTLAVSADGSM 4207

[Close]

BLAST of Lcy09g003160 vs. ExPASy Swiss-Prot
Match: Q9FN03 (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-05
Identity = 37/122 (30.33%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 7   QVKLSSANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDP 66
           +V+    N  GQLG G  E S  P+K++  +   +K V+ GA  TAA+TE          
Sbjct: 140 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD------- 199

Query: 67  ICLAYFGYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISE 126
             L  +G+  YG LG G  ++ L   R+ S   +         K++ V+CG  H+ ++S 
Sbjct: 200 --LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE---------KMSMVACGWRHTISVSY 243

Query: 127 NG 129
           +G
Sbjct: 260 SG 243

[Close]

BLAST of Lcy09g003160 vs. ExPASy Swiss-Prot
Match: Q5PQN1 (Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus OX=10116 GN=Herc4 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 14  NDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCG-AHCTAAITEPPTTLFSRDPICLAYF 73
           ND GQLG   E+  K+P++V  L A+ + +VSCG AH          TL   D   +  +
Sbjct: 61  NDLGQLGH--EKSRKKPEQVVALDAQNIVAVSCGEAH----------TLALNDKGQVYAW 120

Query: 74  GYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISENGEV 131
           G +  GQLG   + E ++  R I + +         ++I +V+CG YHS A+S+  EV
Sbjct: 121 GLDSDGQLGLQGSEECIRVPRNIKSLSD--------IQIVQVACGYYHSLALSKASEV 158

[Close]

BLAST of Lcy09g003160 vs. ExPASy Swiss-Prot
Match: F2Z461 (E3 ISG15--protein ligase Herc6 OS=Mus musculus OX=10090 GN=Herc6 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 37/117 (31.62%), Postives = 52/117 (44.44%), Query Frame = 0


Query: 14  NDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAYFG 73
           N +GQLG   ++ ++ P+ ++ L    V  VSCG   + A+                 +G
Sbjct: 49  NSWGQLGQRRDQSTERPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVF---------AWG 108

Query: 74  YNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISENGEV 131
               GQLG G   E       I A A         +KI +VSCG YHS A+SE+G V
Sbjct: 109 AGSEGQLGIGEFKEISFMPTKIKALAG--------IKIIQVSCGHYHSLALSEDGHV 148

[Close]

BLAST of Lcy09g003160 vs. ExPASy Swiss-Prot
Match: Q6PAV2 (Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus OX=10090 GN=Herc4 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.9e-05
Identity = 39/118 (33.05%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 14  NDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCG-AHCTAAITEPPTTLFSRDPICLAYF 73
           ND GQLG   E+  K+P++V  L A+ + +V+CG AH          TL   D   +  +
Sbjct: 61  NDLGQLGH--EKSRKKPEQVVALDAQNIVAVACGEAH----------TLALNDKGQVYAW 120

Query: 74  GYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISENGEV 131
           G +  GQLG   + E ++  R I + +         ++I +V+CG YHS A+S+  EV
Sbjct: 121 GLDSDGQLGLQGSEECIRVPRNIKSLSD--------IQIVQVACGYYHSLALSKASEV 158

[Close]

BLAST of Lcy09g003160 vs. ExPASy TrEMBL
Match: A0A6J1GR87 (ultraviolet-B receptor UVR8 OS=Cucurbita moschata OX=3662 GN=LOC111456778 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 101/162 (62.35%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPHENDGTISTSRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYN+YGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 205

[Close]

BLAST of Lcy09g003160 vs. ExPASy TrEMBL
Match: A0A6J1JU72 (ultraviolet-B receptor UVR8 OS=Cucurbita maxima OX=3661 GN=LOC111487541 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 101/162 (62.35%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKEPKKVKQLQMEFVKSVSCGAHCTAAIAEPRVNDGTISTSRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYN+YGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 205

[Close]

BLAST of Lcy09g003160 vs. ExPASy TrEMBL
Match: A0A6J1DRJ2 (ultraviolet-B receptor UVR8 OS=Momordica charantia OX=3673 GN=LOC111022887 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.1e-42
Identity = 100/162 (61.73%), Postives = 107/162 (66.05%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSK PKKVKQLQ +FVKS+SCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKHPKKVKQLQTEFVKSISCGAHCTAAIAEPRENDGTISSSRLWVW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   L  +GYN+YGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPKTIIRQVSCGAVHVVALSDDGELQAWGYNEYGQLGRGVTSEG 205

[Close]

BLAST of Lcy09g003160 vs. ExPASy TrEMBL
Match: A0A0A0KUH7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G641620 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.5e-39
Identity = 97/162 (59.88%), Postives = 105/162 (64.81%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSK PKKV QLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKLPKKVNQLQGEFVKSVSCGAHCTAAIAEPRENDGTLSTCRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   L  +GYN+YGQLGRGVTSEG
Sbjct: 146 GQNQGSNFPRLFWGAFTPQTIIRQVSCGAVHVVALSDDGQLQAWGYNEYGQLGRGVTSEG 205

[Close]

BLAST of Lcy09g003160 vs. ExPASy TrEMBL
Match: A0A7J7IA91 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_002645 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.9e-39
Identity = 90/134 (67.16%), Postives = 101/134 (75.37%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP---PTTLFSRDPIC- 72
           AN+FGQLGDGTE+  K+PKKVKQLQ +FV SVSCGAHCTAAI EP     T+  R   C 
Sbjct: 86  ANEFGQLGDGTEKGRKQPKKVKQLQTEFVISVSCGAHCTAAIAEPHENDGTMLIRQVSCG 145

Query: 73  ------------LAYFGYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSC 131
                       L  +GYN+YGQLGRGVT EG QGAR+ISAYAKF+DEAPELVKI +VSC
Sbjct: 146 AVHVVALSEDGLLQAWGYNEYGQLGRGVTCEGRQGARVISAYAKFLDEAPELVKIIQVSC 205

[Close]

BLAST of Lcy09g003160 vs. NCBI nr
Match: KAG6602541.1 (Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 101/162 (62.35%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 173 ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPRENDGTISTSRLWIW 232

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYN+YGQLGRGVTSEG
Sbjct: 233 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 292

[Close]

BLAST of Lcy09g003160 vs. NCBI nr
Match: KAG7033219.1 (RCC1 and BTB domain-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 101/162 (62.35%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 102 ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPRENDGTISTSRLWIW 161

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYN+YGQLGRGVTSEG
Sbjct: 162 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 221

[Close]

BLAST of Lcy09g003160 vs. NCBI nr
Match: XP_023554245.1 (ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023554254.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023554263.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023554270.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 101/162 (62.35%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPRENDGTISTSRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYN+YGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 205

[Close]

BLAST of Lcy09g003160 vs. NCBI nr
Match: XP_022954542.1 (ultraviolet-B receptor UVR8 [Cucurbita moschata])

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-42
Identity = 101/162 (62.35%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPHENDGTISTSRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYN+YGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 205

[Close]

BLAST of Lcy09g003160 vs. NCBI nr
Match: XP_022990753.1 (ultraviolet-B receptor UVR8 [Cucurbita maxima])

HSP 1 Score: 181.4 bits (459), Expect = 4.9e-42
Identity = 101/162 (62.35%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKEPKKVKQLQMEFVKSVSCGAHCTAAIAEPRVNDGTISTSRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNDYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYN+YGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 205

[Close]

BLAST of Lcy09g003160 vs. TAIR 10
Match: AT3G02300.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 145.2 bits (365), Expect = 3.7e-35
Identity = 82/162 (50.62%), Postives = 96/162 (59.26%), Query Frame = 0


Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           AN++GQLGDGTE   K PKKVKQLQ++FVK VSCGA CTAAI EP               
Sbjct: 87  ANEYGQLGDGTEVGRKHPKKVKQLQSEFVKFVSCGAFCTAAIAEPRENDGTLSTSRLWVW 146

Query: 73  ----------------PTTLFSRDPIC-------------LAYFGYNDYGQLGRGVTSEG 131
                           P T   R   C             L  +GYN+ GQLGRGVT EG
Sbjct: 147 GQNQGSNLPRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEG 206

[Close]

BLAST of Lcy09g003160 vs. TAIR 10
Match: AT5G63860.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-07
Identity = 37/122 (30.33%), Postives = 59/122 (48.36%), Query Frame = 0


Query: 7   QVKLSSANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDP 66
           +V+    N  GQLG G  E S  P+K++  +   +K V+ GA  TAA+TE          
Sbjct: 140 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD------- 199

Query: 67  ICLAYFGYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISE 126
             L  +G+  YG LG G  ++ L   R+ S   +         K++ V+CG  H+ ++S 
Sbjct: 200 --LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE---------KMSMVACGWRHTISVSY 243

Query: 127 NG 129
           +G
Sbjct: 260 SG 243

[Close]

BLAST of Lcy09g003160 vs. TAIR 10
Match: AT3G55580.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 35/115 (30.43%), Postives = 53/115 (46.09%), Query Frame = 0


Query: 14  NDFGQLGDGTEEKSKEPK--KVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAY 73
           N FGQLG G ++    PK  +   L+   VK++SCGA  TA IT+               
Sbjct: 390 NQFGQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVITDEGRVF---------C 449

Query: 74  FGYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISE 127
           +G+N YGQLG G   +     R   A  +  D  P+      ++CG +H+  + +
Sbjct: 450 WGWNKYGQLGIGDVID-----RNAPAEVRIKDCFPK-----NIACGWWHTLLLGQ 485

[Close]

BLAST of Lcy09g003160 vs. TAIR 10
Match: AT5G60870.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 41/120 (34.17%), Postives = 55/120 (45.83%), Query Frame = 0


Query: 17  GQLGDGTEEKSKE------PKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLA 76
           G+LG G      E      P KVK L    V SVSCG   T A+T+            L 
Sbjct: 235 GRLGLGPGRGPNEGGGLSVPSKVKALTVP-VASVSCGGFFTMALTKEGQ---------LW 294

Query: 77  YFGYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISENGEV 131
            +G N   +LGRG    G +   + S          E V+IT+++CG YHS A++E G+V
Sbjct: 295 NWGANSNYELGRGDNLGGWEPMPVPSL---------EGVRITQIACGGYHSLALTEEGKV 335

[Close]

BLAST of Lcy09g003160 vs. TAIR 10
Match: AT5G60870.2 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-05
Identity = 41/120 (34.17%), Postives = 55/120 (45.83%), Query Frame = 0


Query: 17  GQLGDGTEEKSKE------PKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLA 76
           G+LG G      E      P KVK L    V SVSCG   T A+T+            L 
Sbjct: 166 GRLGLGPGRGPNEGGGLSVPSKVKALTVP-VASVSCGGFFTMALTKEGQ---------LW 225

Query: 77  YFGYNDYGQLGRGVTSEGLQGARIISAYAKFIDEAPELVKITKVSCGEYHSAAISENGEV 131
            +G N   +LGRG    G +   + S          E V+IT+++CG YHS A++E G+V
Sbjct: 226 NWGANSNYELGRGDNLGGWEPMPVPSL---------EGVRITQIACGGYHSLALTEEGKV 266

The following BLAST results are available for this feature:

BLAST of Lcy09g003160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q15751	2.4e-07	31.03	Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens OX=9606 GN=HERC1 PE=1...	[more]
Q9FN03	1.0e-05	30.33	Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1	[more]
Q5PQN1	1.3e-05	33.90	Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus OX=10116 GN=Herc...	[more]
F2Z461	1.3e-05	31.62	E3 ISG15--protein ligase Herc6 OS=Mus musculus OX=10090 GN=Herc6 PE=2 SV=1	[more]
Q6PAV2	2.9e-05	33.05	Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus OX=10090 GN=Herc4 PE=...	[more]

BLAST of Lcy09g003160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GR87	1.8e-42	62.35	ultraviolet-B receptor UVR8 OS=Cucurbita moschata OX=3662 GN=LOC111456778 PE=4 S...	[more]
A0A6J1JU72	2.4e-42	62.35	ultraviolet-B receptor UVR8 OS=Cucurbita maxima OX=3661 GN=LOC111487541 PE=4 SV=...	[more]
A0A6J1DRJ2	9.1e-42	61.73	ultraviolet-B receptor UVR8 OS=Momordica charantia OX=3673 GN=LOC111022887 PE=4 ...	[more]
A0A0A0KUH7	1.5e-39	59.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G641620 PE=4 SV=1	[more]
A0A7J7IA91	1.9e-39	67.16	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_002645 PE=4 SV=1	[more]

BLAST of Lcy09g003160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602541.1	3.8e-42	62.35	Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7033219.1	3.8e-42	62.35	RCC1 and BTB domain-containing protein 2, partial [Cucurbita argyrosperma subsp....	[more]
XP_023554245.1	3.8e-42	62.35	ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023554254.1 ultravi...	[more]
XP_022954542.1	3.8e-42	62.35	ultraviolet-B receptor UVR8 [Cucurbita moschata]	[more]
XP_022990753.1	4.9e-42	62.35	ultraviolet-B receptor UVR8 [Cucurbita maxima]	[more]

BLAST of Lcy09g003160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02300.1	3.7e-35	50.62	Regulator of chromosome condensation (RCC1) family protein	[more]
AT5G63860.1	7.2e-07	30.33	Regulator of chromosome condensation (RCC1) family protein	[more]
AT3G55580.1	2.3e-05	30.43	Regulator of chromosome condensation (RCC1) family protein	[more]
AT5G60870.1	2.3e-05	34.17	Regulator of chromosome condensation (RCC1) family protein	[more]
AT5G60870.2	2.3e-05	34.17	Regulator of chromosome condensation (RCC1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	GENE3D	2.130.10.30		coord: 4..130 e-value: 5.2E-24 score: 86.7
IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	SUPERFAMILY	50985	RCC1/BLIP-II	coord: 14..130
IPR000408	Regulator of chromosome condensation, RCC1	PFAM	PF00415	RCC1	coord: 72..124 e-value: 3.2E-7 score: 30.9 coord: 14..54 e-value: 1.2E-8 score: 35.4
IPR000408	Regulator of chromosome condensation, RCC1	PROSITE	PS00626	RCC1_2	coord: 114..124
IPR000408	Regulator of chromosome condensation, RCC1	PROSITE	PS50012	RCC1_3	coord: 6..57 score: 10.283
IPR000408	Regulator of chromosome condensation, RCC1	PROSITE	PS50012	RCC1_3	coord: 67..127 score: 10.423699
None	No IPR available	PANTHER	PTHR45622:SF14	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN	coord: 14..58
None	No IPR available	PANTHER	PTHR45622	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	coord: 69..130
None	No IPR available	PANTHER	PTHR45622	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	coord: 14..58
None	No IPR available	PANTHER	PTHR45622:SF14	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN	coord: 69..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g003160.1	Lcy09g003160.1	mRNA