Lcy09g002540 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g002540
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transcription elongation factor
Location	Chr09: 2050110 .. 2050640 (+)
RNA-Seq Expression	Lcy09g002540
Synteny	Lcy09g002540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAAATCAAAAGATGCTGCTCGGGACAAAATTAGAGAACTTCTCTTTGAGGCATTCTCCAAGGTTCCTGGCGAGGCTGATGAAGATGTTATAGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACCGAAGCACAAAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTCCGGAGAAAAGTTCTACTAGGACTTATCAAGCCAGAAAGGCTGATCAACTTGAGCACAGCTGTTATGGCAAGTGATCAGAGAAAACGTGAGAATGAGGAGATTGCACAAAAGGCTTTATTTGTTTGTGAGCATGGAGGAGCTCCTAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAACGCAAGACGACCTACTATCAGTTGCAAACGCGGAGTGCTGATGAACCTATGACTACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

mRNA sequence

ATGATTAAATCAAAAGATGCTGCTCGGGACAAAATTAGAGAACTTCTCTTTGAGGCATTCTCCAAGGTTCCTGGCGAGGCTGATGAAGATGTTATAGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACCGAAGCACAAAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTCCGGAGAAAAGTTCTACTAGGACTTATCAAGCCAGAAAGGCTGATCAACTTGAGCACAGCTGTTATGGCAAGTGATCAGAGAAAACGTGAGAATGAGGAGATTGCACAAAAGGCTTTATTTGTTTGTGAGCATGGAGGAGCTCCTAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAACGCAAGACGACCTACTATCAGTTGCAAACGCGGAGTGCTGATGAACCTATGACTACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Coding sequence (CDS)

ATGATTAAATCAAAAGATGCTGCTCGGGACAAAATTAGAGAACTTCTCTTTGAGGCATTCTCCAAGGTTCCTGGCGAGGCTGATGAAGATGTTATAGATGAAGTAAATGCAAGTGATCCTATCCGTGTTGCTGTTTCTGTAGAATCCGTGATGTTTGAAAATTGGGGAGGTTCTACCGAAGCACAAAAGGCCAAGTACAGATCTATAATGTTTAACCTCAAGGATCCGAAGAACCCAGACTTCCGGAGAAAAGTTCTACTAGGACTTATCAAGCCAGAAAGGCTGATCAACTTGAGCACAGCTGTTATGGCAAGTGATCAGAGAAAACGTGAGAATGAGGAGATTGCACAAAAGGCTTTATTTGTTTGTGAGCATGGAGGAGCTCCTAAAGCTACTACCGATCAGTTCAAGTGTGGTCGATGTGGTCAACGCAAGACGACCTACTATCAGTTGCAAACGCGGAGTGCTGATGAACCTATGACTACCTTTGTAACTTGTGTAAACTGCAATAACCATTGGAAGTTCTGTTGA

Protein sequence

MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTEAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKALFVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC

Homology

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BLAST of Lcy09g002540 vs. ExPASy Swiss-Prot
Match: Q9ZVH8 (Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.3e-66
Identity = 125/176 (71.02%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           M+K  D  RDKIRELL EA  +V GEAD+   + VNASDP+RVAVSVES+MFE  G ST 
Sbjct: 203 MLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAVSVESLMFEKLGRSTG 262

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQK KYRSIMFNL+D  NPD RR+VL G I PE+LI LS   MASD+RK+EN +I +KAL
Sbjct: 263 AQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQIKEKAL 322

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE G A KA+TDQFKCGRCGQRK TYYQ+QTRSADEPMTT+VTCVNC+NHWKFC
Sbjct: 323 FDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of Lcy09g002540 vs. ExPASy Swiss-Prot
Match: Q15560 (Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.8e-27
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 6   DAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTEAQKAK 65
           DA R+K RE+L  A      + D D +     +D  R++  +E  +F + G +    K +
Sbjct: 136 DAVRNKCREMLTAAL-----QTDHDHV--AIGADCERLSAQIEECIFRDVGNTDMKYKNR 195

Query: 66  YRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKALFVCEH 125
            RS + NLKD KNPD RR VL G I P+++  +++  MASD+ K   + + ++A+   + 
Sbjct: 196 VRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQM 255

Query: 126 GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
                  TD F CG+C ++  TY Q+QTRS+DEPMTTFV C  C N WKFC
Sbjct: 256 ARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299

[Close]

BLAST of Lcy09g002540 vs. ExPASy Swiss-Prot
Match: Q148K0 (Transcription elongation factor A protein 2 OS=Bos taurus OX=9913 GN=TCEA2 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.1e-26
Identity = 67/171 (39.18%), Postives = 96/171 (56.14%), Query Frame = 0


Query: 6   DAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTEAQKAK 65
           DA R K RE+L  A      + D D +     +D   +A  +E  +F + G +    K +
Sbjct: 137 DAVRTKCREMLTAAL-----QTDHDHV--AIGADCECLAGQIEECIFRDVGNTDMKYKNR 196

Query: 66  YRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKALFVCEH 125
            RS + NLKD KNP  RRKVL G I P+++  +++  MASD+ K   + + ++A+   + 
Sbjct: 197 VRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQM 256

Query: 126 GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
                  TD F CG+C ++  TY Q+QTRS+DEPMTTFV C  C N WKFC
Sbjct: 257 ARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 300

[Close]

BLAST of Lcy09g002540 vs. ExPASy Swiss-Prot
Match: P49373 (Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tfs1 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-25
Identity = 62/147 (42.18%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 31  VID-EVNASDPIRVAVSVESVMFENWGGSTEAQ-KAKYRSIMFNLKDPKNPDFRRKVLLG 90
           VID + ++S  I  A  +++ +     G T ++ + + RS+  NLKD  NP  R  VL  
Sbjct: 146 VIDSDESSSLIIAKAKEIDAQVLARAAGKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRN 205

Query: 91  LIKPERLINLSTAVMASDQRKRENEEIAQKALFVCEHGGAPKATTDQFKCGRCGQRKTTY 150
            I P+RL  +++A +AS+ R++E+ ++ Q+ LF  +     KA TD F CG+C Q+K +Y
Sbjct: 206 EITPQRLSTMTSAELASEDRRKEDAKLEQENLFHAQGAKPQKAVTDLFTCGKCKQKKVSY 265

Query: 151 YQLQTRSADEPMTTFVTCVNCNNHWKF 176
           YQ+QTRSADEPMTTF  C  C N WKF
Sbjct: 266 YQMQTRSADEPMTTFCECTVCGNRWKF 292

[Close]

BLAST of Lcy09g002540 vs. ExPASy Swiss-Prot
Match: P20232 (Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-25
Identity = 65/171 (38.01%), Postives = 90/171 (52.63%), Query Frame = 0


Query: 6   DAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTEAQKAK 65
           DA R K RE+L  A     GE  E         +P  +A  +E  ++  +  +    K +
Sbjct: 151 DAVRIKCREMLATALK--IGEVPE------GCGEPEEMAAELEDAIYSEFNNTDMKYKNR 210

Query: 66  YRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKALFVCEH 125
            RS + NLKDPKNP  R   + G +  ++L  ++   MASD+ K+  E+  ++A+   + 
Sbjct: 211 IRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQL 270

Query: 126 GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
                  TD  KC +C +R  TY QLQTRSADEPMTTFV C  C N WKFC
Sbjct: 271 ATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWKFC 313

[Close]

BLAST of Lcy09g002540 vs. ExPASy TrEMBL
Match: A0A5A7U9K1 (Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002160 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 166/176 (94.32%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           M+KSKDAARDKIRELLFEAFSKVPGEADEDV+DEVNASDPIRVA+SVESVMFENWGGST 
Sbjct: 194 MVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISVESVMFENWGGSTG 253

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+IN++TA MASDQRKRENEEIAQKAL
Sbjct: 254 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQRKRENEEIAQKAL 313

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 314 FDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 369

[Close]

BLAST of Lcy09g002540 vs. ExPASy TrEMBL
Match: A0A1S3C448 (transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 166/176 (94.32%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           M+KSKDAARDKIRELLFEAFSKVPGEADEDV+DEVNASDPIRVA+SVESVMFENWGGST 
Sbjct: 194 MVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISVESVMFENWGGSTG 253

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+IN++TA MASDQRKRENEEIAQKAL
Sbjct: 254 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQRKRENEEIAQKAL 313

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 314 FDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 369

[Close]

BLAST of Lcy09g002540 vs. ExPASy TrEMBL
Match: A0A0A0KDH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.1e-90
Identity = 167/176 (94.89%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           MIKSKDAARDKIRELLFEAFSKVPGEADE+ +DEVNASDPIRVAVSVESVMFENWGGST 
Sbjct: 194 MIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESVMFENWGGSTG 253

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+IN+STA MASDQRKRENEEIAQKAL
Sbjct: 254 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKAL 313

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 314 FDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 369

[Close]

BLAST of Lcy09g002540 vs. ExPASy TrEMBL
Match: A0A6J1JLK7 (transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111486982 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 9.3e-90
Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           MIKSKDAARDKIRELL EAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGST 
Sbjct: 199 MIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTG 258

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+ NLST  MASDQRKRENEEIAQKAL
Sbjct: 259 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKAL 318

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 319 FECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Lcy09g002540 vs. ExPASy TrEMBL
Match: A0A6J1GYA3 (transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC111458597 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 9.3e-90
Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           MIKSKDAARDKIRELL EAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGST 
Sbjct: 199 MIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTG 258

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+ NLST  MASDQRKRENEEIAQKAL
Sbjct: 259 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKAL 318

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 319 FECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Lcy09g002540 vs. NCBI nr
Match: XP_038884917.1 (transcription elongation factor TFIIS [Benincasa hispida])

HSP 1 Score: 343.2 bits (879), Expect = 1.3e-90
Identity = 169/176 (96.02%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           MIKSKDAARDKIRELLFEAFSKVPGEADEDV+DEVNASDPIRVAVSVESVMFENWGGST 
Sbjct: 200 MIKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAVSVESVMFENWGGSTG 259

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+IN+STA MASDQRKRENEEIAQKAL
Sbjct: 260 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKAL 319

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 320 FDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 375

[Close]

BLAST of Lcy09g002540 vs. NCBI nr
Match: XP_008456781.1 (PREDICTED: transcription elongation factor TFIIS [Cucumis melo] >KAA0051978.1 transcription elongation factor TFIIS [Cucumis melo var. makuwa] >TYK04579.1 transcription elongation factor TFIIS [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.1e-90
Identity = 166/176 (94.32%), Postives = 172/176 (97.73%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           M+KSKDAARDKIRELLFEAFSKVPGEADEDV+DEVNASDPIRVA+SVESVMFENWGGST 
Sbjct: 194 MVKSKDAARDKIRELLFEAFSKVPGEADEDVMDEVNASDPIRVAISVESVMFENWGGSTG 253

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+IN++TA MASDQRKRENEEIAQKAL
Sbjct: 254 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMTTADMASDQRKRENEEIAQKAL 313

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 314 FDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 369

[Close]

BLAST of Lcy09g002540 vs. NCBI nr
Match: XP_004138392.1 (transcription elongation factor TFIIS [Cucumis sativus] >KGN45841.1 hypothetical protein Csa_005416 [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89
Identity = 167/176 (94.89%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           MIKSKDAARDKIRELLFEAFSKVPGEADE+ +DEVNASDPIRVAVSVESVMFENWGGST 
Sbjct: 194 MIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASDPIRVAVSVESVMFENWGGSTG 253

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+IN+STA MASDQRKRENEEIAQKAL
Sbjct: 254 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMSTADMASDQRKRENEEIAQKAL 313

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 314 FDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 369

[Close]

BLAST of Lcy09g002540 vs. NCBI nr
Match: XP_022989946.1 (transcription elongation factor TFIIS-like [Cucurbita maxima])

HSP 1 Score: 339.3 bits (869), Expect = 1.9e-89
Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           MIKSKDAARDKIRELL EAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGST 
Sbjct: 199 MIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTG 258

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+ NLST  MASDQRKRENEEIAQKAL
Sbjct: 259 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKAL 318

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 319 FECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Lcy09g002540 vs. NCBI nr
Match: XP_022957122.1 (transcription elongation factor TFIIS-like [Cucurbita moschata])

HSP 1 Score: 339.3 bits (869), Expect = 1.9e-89
Identity = 168/176 (95.45%), Postives = 169/176 (96.02%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           MIKSKDAARDKIRELL EAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGST 
Sbjct: 199 MIKSKDAARDKIRELLVEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTG 258

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPER+ NLST  MASDQRKRENEEIAQKAL
Sbjct: 259 AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMTNLSTTDMASDQRKRENEEIAQKAL 318

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE GGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC
Sbjct: 319 FECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 374

[Close]

BLAST of Lcy09g002540 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 251.9 bits (642), Expect = 3.8e-67
Identity = 125/176 (71.02%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDEVNASDPIRVAVSVESVMFENWGGSTE 60
           M+K  D  RDKIRELL EA  +V GEAD+   + VNASDP+RVAVSVES+MFE  G ST 
Sbjct: 203 MLKCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAVSVESLMFEKLGRSTG 262

Query: 61  AQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKAL 120
           AQK KYRSIMFNL+D  NPD RR+VL G I PE+LI LS   MASD+RK+EN +I +KAL
Sbjct: 263 AQKLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQIKEKAL 322

Query: 121 FVCEHGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 177
           F CE G A KA+TDQFKCGRCGQRK TYYQ+QTRSADEPMTT+VTCVNC+NHWKFC
Sbjct: 323 FDCERGLAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWKFC 378

[Close]

BLAST of Lcy09g002540 vs. TAIR 10
Match: AT2G42730.1 (F-box family protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-20
Identity = 57/122 (46.72%), Postives = 75/122 (61.48%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGE-ADEDVIDEVNASDPIRVAVSVESVMFENWGGST 60
           M K+ D+ RDK+RE+L  +  KV  E  D ++   V A DP  VAVSVES MFE  G   
Sbjct: 599 MKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEKLGCFM 658

Query: 61  EAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQKA 120
              KAKYRSI+FN+ D  NPD RRKVL+G I  ERL+ +    M S++ ++E + I + A
Sbjct: 659 GPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEMGSEKIQKEVQRIKENA 718

Query: 121 LF 122
            F
Sbjct: 719 RF 720

[Close]

BLAST of Lcy09g002540 vs. TAIR 10
Match: AT4G18720.1 (Transcription factor IIS protein )

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-19
Identity = 55/106 (51.89%), Postives = 68/106 (64.15%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGE-ADEDVIDEVNASDPIRVAVSVESVMFENWGGST 60
           M K+ D+ RDK+RE+L  + +KV  E  D ++   V A DP  VAVSVE+ MFEN G   
Sbjct: 110 MKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDPWVVAVSVETAMFENLGCFM 169

Query: 61  EAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMAS 106
             QKAKYRSI+FN+ D  NPD RRKVLLG I  ERL+ +    M S
Sbjct: 170 GPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEKEEMGS 215

[Close]

BLAST of Lcy09g002540 vs. TAIR 10
Match: AT5G42325.1 (Transcription factor IIS protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-11
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 1   MIKSKDAARDKIRELLFEAFSKVPGEADEDVIDE--VNASDPIRVAVSVESVMFENWGGS 60
           M K+ D+ RDK+ E+L  + +KV  E  +  +    +   DP  VAVSVES M       
Sbjct: 109 MKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPWVVAVSVESAM------- 168

Query: 61  TEAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINLSTAVMASDQRKRENEEIAQK 120
                    SI+FN+ D  NPD RRKVL+G I  ERL+ +    M S++ ++E + I ++
Sbjct: 169 ---------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKDEMGSEKIQKEVQRIKER 215

Query: 121 ALF 122
           A F
Sbjct: 229 ARF 215

[Close]

BLAST of Lcy09g002540 vs. TAIR 10
Match: AT5G25520.1 (SPOC domain / Transcription elongation factor S-II protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-10
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 39  DPIRVAVSVESVMFENWGGSTEAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERLINL 98
           DP  +A  +E  +F+ +GG  +  K K RS++FNLKD  NP+ R  V+ G I PERL N+
Sbjct: 359 DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNM 418

Query: 99  STAVMASDQ----RKRENEEIAQ 118
           +   +AS +    R+ + EE+A+
Sbjct: 419 TAEELASKELSQWRQAKAEEMAE 441

The following BLAST results are available for this feature:

BLAST of Lcy09g002540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVH8	5.3e-66	71.02	Transcription elongation factor TFIIS OS=Arabidopsis thaliana OX=3702 GN=TFIIS P...	[more]
Q15560	4.8e-27	39.18	Transcription elongation factor A protein 2 OS=Homo sapiens OX=9606 GN=TCEA2 PE=...	[more]
Q148K0	9.1e-26	39.18	Transcription elongation factor A protein 2 OS=Bos taurus OX=9913 GN=TCEA2 PE=2 ...	[more]
P49373	1.2e-25	42.18	Transcription elongation factor S-II OS=Schizosaccharomyces pombe (strain 972 / ...	[more]
P20232	2.0e-25	38.01	Transcription elongation factor S-II OS=Drosophila melanogaster OX=7227 GN=TfIIS...	[more]

BLAST of Lcy09g002540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9K1	2.4e-90	94.32	Transcription elongation factor TFIIS OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3C448	2.4e-90	94.32	transcription elongation factor TFIIS OS=Cucumis melo OX=3656 GN=LOC103496629 PE...	[more]
A0A0A0KDH9	7.1e-90	94.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014610 PE=4 SV=1	[more]
A0A6J1JLK7	9.3e-90	95.45	transcription elongation factor TFIIS-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GYA3	9.3e-90	95.45	transcription elongation factor TFIIS-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Lcy09g002540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884917.1	1.3e-90	96.02	transcription elongation factor TFIIS [Benincasa hispida]	[more]
XP_008456781.1	5.1e-90	94.32	PREDICTED: transcription elongation factor TFIIS [Cucumis melo] >KAA0051978.1 tr...	[more]
XP_004138392.1	1.5e-89	94.89	transcription elongation factor TFIIS [Cucumis sativus] >KGN45841.1 hypothetical...	[more]
XP_022989946.1	1.9e-89	95.45	transcription elongation factor TFIIS-like [Cucurbita maxima]	[more]
XP_022957122.1	1.9e-89	95.45	transcription elongation factor TFIIS-like [Cucurbita moschata]	[more]

BLAST of Lcy09g002540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38560.1	3.8e-67	71.02	transcript elongation factor IIS	[more]
AT2G42730.1	1.5e-20	46.72	F-box family protein	[more]
AT4G18720.1	1.0e-19	51.89	Transcription factor IIS protein	[more]
AT5G42325.1	1.7e-11	36.59	Transcription factor IIS protein	[more]
AT5G25520.1	7.2e-10	39.76	SPOC domain / Transcription elongation factor S-II protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003618	Transcription elongation factor S-II, central domain	SMART	SM00510	mid_6	coord: 6..114 e-value: 9.8E-34 score: 128.1
IPR003618	Transcription elongation factor S-II, central domain	PFAM	PF07500	TFIIS_M	coord: 6..121 e-value: 2.5E-30 score: 105.3
IPR003618	Transcription elongation factor S-II, central domain	PROSITE	PS51321	TFIIS_CENTRAL	coord: 8..131 score: 31.754866
IPR001222	Zinc finger, TFIIS-type	SMART	SM00440	Cys4_2	coord: 136..175 e-value: 9.7E-24 score: 94.9
IPR001222	Zinc finger, TFIIS-type	PFAM	PF01096	TFIIS_C	coord: 136..174 e-value: 3.5E-20 score: 71.6
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS00466	ZF_TFIIS_1	coord: 138..173
IPR001222	Zinc finger, TFIIS-type	PROSITE	PS51133	ZF_TFIIS_2	coord: 134..174 score: 14.636859
IPR036575	Transcription elongation factor S-II, central domain superfamily	GENE3D	1.10.472.30		coord: 1..104 e-value: 1.4E-25 score: 91.7
IPR036575	Transcription elongation factor S-II, central domain superfamily	SUPERFAMILY	46942	Elongation factor TFIIS domain 2	coord: 5..106
None	No IPR available	GENE3D	2.20.25.10		coord: 105..176 e-value: 7.4E-28 score: 98.2
None	No IPR available	PANTHER	PTHR11477:SF36	TRANSCRIPTION ELONGATION FACTOR TFIIS	coord: 1..176
None	No IPR available	PANTHER	PTHR11477	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	coord: 1..176
None	No IPR available	CDD	cd13749	Zn-ribbon_TFIIS	coord: 129..175 e-value: 7.78167E-31 score: 104.225
None	No IPR available	SUPERFAMILY	57783	Zinc beta-ribbon	coord: 116..174
IPR035100	Transcription elongation factor, IIS-type	PIRSF	PIRSF006704	TFIIS	coord: 1..176 e-value: 3.1E-71 score: 238.4
IPR006289	Transcription elongation factor, TFIIS	TIGRFAM	TIGR01385	TIGR01385	coord: 3..176 e-value: 4.7E-73 score: 244.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g002540.1	Lcy09g002540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006414	translational elongation
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding