Lcy09g002520 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g002520
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUbiquinol-cytochrome c reductase
LocationChr09: 2044688 .. 2047859 (+)
RNA-Seq ExpressionLcy09g002520
SyntenyLcy09g002520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGAGGCATTGAGAGAAAAATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGTCCAGGACGCCGTCTCCAATCTACAGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGATCGTTCAGGTTTTCTCCTTTTCTAAATTCCTCGATCTTTCTTTGAATCTTTTGACTTTCTTATGTTGGATTTGACGATGCATCGATCTTCTTGAAAGTTGTTTCTTGATTCTGCTCTCTTGGCTATGCCTGTTGATGATTCACGTTTCCAGTCTTGGACGATTTACCGTCGCTTATTTCTGATCTTATTTTCACAATTCATCTTTCGATTTTTTTGTTCTTTCACCAGCATTAATATAGTGATTATGAGATTAGCTTTCATTTTCAGCTGGTCATTCGCCAGTTGAGATCTGGAAGAAATGTATTCGTATGAATTATGCTGTCTATGTACTTACGTATTCATCGTTGATGAGAAGCGGAGAGAGTTATTTGTTTATTTTTATTAGTTTTCTTTTACCATTTTCTTCTTTATCGTCATCGATCGAGCACAAGATGATACTCTTGCCCTGTTGGGACTCTTTTTGTTTATCAAGCTTCTTTGGTTTCTCGACAGTGTGTTTGGAAAGCGTATTTGTATAATTGTCTGTGTTTGATAATCATTGCTTATTTTTCTCTCTAGCATGAAACAAATTGAAAATATTTCTACTTCAATACTCAAAATATCCTCCTATGAGAATAGGATGAAGTAACTATAAATGCCGCCAAAGACGACCCCTTTCCTAGAATGGCAGCATATGAATGTAGTTGCTTTTAGTTTAATGTCACGATTCTTGTAAAGTTTTGTATGATAACTGTTAGAAATATCAAAAAATGAAGTGCACTAAAATTTTTACTCTCCCTCTCTATATTAGAACTCAAGGACACTGATGTACAACATATAGAATAGATCCTGTTCGAGTAAGGTTCTCTATATGAAGCACCATGTTAGACATTGAATCTCAGAAGTTTCTAAAATTTTCGAGTAGGTAATTATCTGTGGCTGCACATCCTGCCGTCCTCATGATCACACTCTCTGGTTCCACATTGGAACTGTGGTTTACTTCCAAATCCAATCCAATCCAAGTTCAGTTTACTTCAGTGTTATGGAGCTTTAGCCACTCATAGAAGCCCAAGACCCTACCTGATCAAAAGTTTTGATCCTCTACCCCATGCTGTTTCTACAGTCCTTCCCAAGTCCCCTAACTTTATCACTGTAGTTGGCTTCAACCTTCTGTTTTAAACCATTAATGAACTTTCTACCTGTATCTACTGCAAAATTACATCGGTACTGTCATCCAAATTCCTAATCCCAACTGCCATCAATACTCCCGAACACTTCTTTGGATAATGTCAAAAACTTTGCTGTTTGCACTCTGCACTGAAGTTTCTGTCCATCAGTCCGCTGAACTGGGTGAGAGGCTTTCCATCAAAGCTCACTACCGATCTCTTGAACTCCTCAGGATCTGGCATTCTTTTCACAGGGAAGTATTGGTCTGCTCAAAACACATTCTCATCCTCTCTGTTGCATTTTTTAACCAAGCACCTTCTCTCACAATGTTCCAATGTTTCTTTCTAGCATAGGAAGCTTTACAAGCCACTCAGAGTAAAGACCATACTGCATTTCTTCTGTACCAACTTCAAATTTGATCTCCCTTCTGTCAAACCAATCATATATTCTGCACACTTTCCTCTAGGAATTCCCAAAATTGGAGGGCTCTAATACCAAAGTTGATAGACCCCTTACAATTGGGTTTAACAAATAATCTCAATTGCAAGAGAAGAATCTTGATTGATGGTATGGGGTTTTATTAGCTCGTCCCCTTTCTCTGTTCCTCATGTTCTCTTTCTATATGCTTAGTGATGACTCCAACTCCCTCTCTCCAACACTAACAAAGACAATTACCATTGCCTCTCCTCTTTTACTGACTAGGTTCACGGCTGTTGTTTTCTTCCCTTCTCAACTACACCACTGGTGTTCTTTTGCTGTATGTTTCTTCGGATTTATTGCTTCAGAAATATTGTTGGCTTTTTGGCCATGACACTAGTAGTAGGTGGGCAAATTTTTTGTATTCCAGATGGGCTTGGTTACCTTTGATATTGAAGCTGACTGGGTATTTCCTTTGGCATTTTAGGGAGATGGTCCTCATTTTGTTGGGTTTTCAGTTTTCTGTATTGTATTTGCAAATAAAGGGATAGAGATTTGATCCTACAACCTATAAGAAGAGTATATATGCCTGACCACTCAGATGCTTAGGTCGATTACTAACCTTTAGTAGCTTTGATCTTTTTATGATGACTTTTTTATCCAATAAAAGAATATTTGTCTTTTTCCTTCTTGGAAATGCTATGCCGTTTACTAGAAGAGGATTTAATTATGTACATTTTCCCTGATTGTTTGCGAGGCTGGCAACCAACCTAAATTGTTTGAGTTTTCAACCATTCATTTCTCATTCAAACAGTTAGTTCCAATTAATTTTATCATATATGTTCTTTTATTGTGTTAATTAAAAGGGGGGCCTTTTGTGTTATGCCTTCTAGTACTACTAATAATACATTTGAAGAGAAATCATTAACGGATACAATCTTTCCTCTTTCTGAGGGCCCTCTGGTGCATTAATATGTCACGAATCTAACTATTCCTTTCTCTCTTTTGAACCCTCTGCAGCCCTTTGACTGGATCAAGAAAACGTTCTTCGAGAAGCCACAAGAGGCATGAATTGTTATTTGAAGACTCACCACAGTTTTTGTTAATAAGTATCAGTTCATTGCCGCAAATGGGTAAACTGCAGAGTTCATTGGAATAACATGTTTTGTAATAGACTTTGTTTTCATTAAATTGAGTCCTTTCATTTTCTCCAACGTTTGGATTTTCTTCGTTAAAAAGTCTAGTTGATATGTTTTCTTGCCCCATTTACTTTAATTTTCCAGGATGTTTTCCTTGGACGTACATGGTTAATTTGCTACTCGCATTAGTTGCAACCTGGGTATTGTGAGGTTTCCTGCATATAGTAATTGGGGTTGGAGATTCGAACTTTTAACATATTTATGTGTTCAATTGAAACTTTTTCCATAAGATACACAACTCCAACTTCTCATGCCTTCAACTTTTTTTTTTTTT

mRNA sequence

GGAAGAGGCATTGAGAGAAAAATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGTCCAGGACGCCGTCTCCAATCTACAGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGATCGTTCAGCCCTTTGACTGGATCAAGAAAACGTTCTTCGAGAAGCCACAAGAGGCATGAATTGTTATTTGAAGACTCACCACAGTTTTTGTTAATAAGTATCAGTTCATTGCCGCAAATGGGTAAACTGCAGAGTTCATTGGAATAACATGTTTTGTAATAGACTTTGTTTTCATTAAATTGAGTCCTTTCATTTTCTCCAACGTTTGGATTTTCTTCGTTAAAAAGTCTAGTTGATATGTTTTCTTGCCCCATTTACTTTAATTTTCCAGGATGTTTTCCTTGGACGTACATGGTTAATTTGCTACTCGCATTAGTTGCAACCTGGGTATTGTGAGGTTTCCTGCATATAGTAATTGGGGTTGGAGATTCGAACTTTTAACATATTTATGTGTTCAATTGAAACTTTTTCCATAAGATACACAACTCCAACTTCTCATGCCTTCAACTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCAGGTGAATCGACTTTGTTCAAGTTCTTGAGTCCAGGACGCCGTCTCCAATCTACAGACATCCAAGCCGCCGCCGGCTGGGGTGTCGCCGCCGCCACAACTGCTCTCTGGATCGTTCAGCCCTTTGACTGGATCAAGAAAACGTTCTTCGAGAAGCCACAAGAGGCATGA

Protein sequence

MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQEA
Homology
[Close]
BLAST of Lcy09g002520 vs. ExPASy Swiss-Prot
Match: P48505 (Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 2  AGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQE 57
          A  + LFKFL P  R QSTDIQAAAGWGVAA T ALW++QP+D+++KTF EK +E
Sbjct: 6  AAGNGLFKFLRPKLRPQSTDIQAAAGWGVAAVTGALWVIQPWDFLRKTFIEKQEE 60

[Close]
BLAST of Lcy09g002520 vs. ExPASy Swiss-Prot
Match: Q94K78 (Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRY PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.4e-12
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKP 55
          MAG S L   + P  ++Q+ DIQAAAGWG+AAA  A+W+VQPF WIKKTF + P
Sbjct: 1  MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPP 52

[Close]
BLAST of Lcy09g002520 vs. ExPASy TrEMBL
Match: A9PAG4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.9e-17
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEK 54
          MAGE+ +FKFLSP  RLQSTDIQ AA WGVAA TTALW+VQPFDWIKKTFFEK
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEK 53

[Close]
BLAST of Lcy09g002520 vs. ExPASy TrEMBL
Match: A0A0D2SX41 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G219300 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQ 56
          MAGE  LFKFL PG+RLQ  D+QAAA WGVAA T ALW++QPFDW+KKTF EKP+
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Lcy09g002520 vs. ExPASy TrEMBL
Match: A0A5D2KMT9 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D06G239100v1 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQ 56
          MAGE  LFKFL PG+RLQ  D+QAAA WGVAA T ALW++QPFDW+KKTF EKP+
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Lcy09g002520 vs. ExPASy TrEMBL
Match: A0A5D2Q9E3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A06G215300v1 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQ 56
          MAGE  LFKFL PG+RLQ  D+QAAA WGVAA T ALW++QPFDW+KKTF EKP+
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Lcy09g002520 vs. ExPASy TrEMBL
Match: A0A5J5VGI3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A06G195400v1 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-16
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQ 56
          MAGE  LFKFL PG+RLQ  D+QAAA WGVAA T ALW++QPFDW+KKTF EKP+
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Lcy09g002520 vs. NCBI nr
Match: KAG6578485.1 (hypothetical protein SDJN03_22933, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 1   MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQEA 58
           MAGESTLFKFLSPGRR QSTDIQAAAGWGVAAATTALW+VQPFDWIKKTFF+KPQEA
Sbjct: 117 MAGESTLFKFLSPGRRFQSTDIQAAAGWGVAAATTALWVVQPFDWIKKTFFDKPQEA 173

[Close]
BLAST of Lcy09g002520 vs. NCBI nr
Match: KAF3433259.1 (hypothetical protein FNV43_RR24361 [Rhamnella rubrinervis])

HSP 1 Score: 96.7 bits (239), Expect = 7.0e-17
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQ 56
          MAGE+ LFKFL+P RR QSTDIQAA  WGVAA TTALWIVQPFDW++KTFFEKP+
Sbjct: 23 MAGEAGLFKFLNPRRRPQSTDIQAAGMWGVAATTTALWIVQPFDWLRKTFFEKPE 77

[Close]
BLAST of Lcy09g002520 vs. NCBI nr
Match: ABK93367.1 (unknown [Populus trichocarpa] >ABK93644.1 unknown [Populus trichocarpa] >ABK95450.1 unknown [Populus trichocarpa] >ABK96046.1 unknown [Populus trichocarpa] >PNS90741.1 hypothetical protein POPTR_019G059500 [Populus trichocarpa])

HSP 1 Score: 95.1 bits (235), Expect = 2.0e-16
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEK 54
          MAGE+ +FKFLSP  RLQSTDIQ AA WGVAA TTALW+VQPFDWIKKTFFEK
Sbjct: 1  MAGENAMFKFLSPRLRLQSTDIQTAAFWGVAAGTTALWLVQPFDWIKKTFFEK 53

[Close]
BLAST of Lcy09g002520 vs. NCBI nr
Match: KAB2026486.1 (hypothetical protein ES319_D06G222600v1 [Gossypium barbadense] >KAG4143421.1 hypothetical protein ERO13_D06G187000v2 [Gossypium hirsutum] >KJB67953.1 hypothetical protein B456_010G219300 [Gossypium raimondii] >TYG66033.1 hypothetical protein ES288_D06G235200v1 [Gossypium darwinii] >TYH68160.1 hypothetical protein ES332_D06G239100v1 [Gossypium tomentosum] >TYI78599.1 hypothetical protein E1A91_D06G224000v1 [Gossypium mustelinum])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQ 56
          MAGE  LFKFL PG+RLQ  D+QAAA WGVAA T ALW++QPFDW+KKTF EKP+
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Lcy09g002520 vs. NCBI nr
Match: KAB2078920.1 (hypothetical protein ES319_A06G195400v1 [Gossypium barbadense] >KAG4196580.1 hypothetical protein ERO13_A06G180100v2 [Gossypium hirsutum] >TYH14430.1 hypothetical protein ES288_A06G220000v1 [Gossypium darwinii] >TYI24175.1 hypothetical protein ES332_A06G215300v1 [Gossypium tomentosum] >TYJ31418.1 hypothetical protein E1A91_A06G196600v1 [Gossypium mustelinum])

HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKPQ 56
          MAGE  LFKFL PG+RLQ  D+QAAA WGVAA T ALW++QPFDW+KKTF EKP+
Sbjct: 1  MAGERALFKFLKPGQRLQPADVQAAAMWGVAATTGALWLIQPFDWLKKTFLEKPE 55

[Close]
BLAST of Lcy09g002520 vs. TAIR 10
Match: AT2G40765.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 1  MAGESTLFKFLSPGRRLQSTDIQAAAGWGVAAATTALWIVQPFDWIKKTFFEKP 55
          MAG S L   + P  ++Q+ DIQAAAGWG+AAA  A+W+VQPF WIKKTF + P
Sbjct: 1  MAGTSGLLNAVKP--KIQTIDIQAAAGWGIAAAAGAIWVVQPFGWIKKTFIDPP 52

The following BLAST results are available for this feature:
BLAST of Lcy09g002520 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P485052.6e-1465.45Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum OX... [more]
Q94K785.4e-1259.26Cytochrome b-c1 complex subunit 10, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of Lcy09g002520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A9PAG49.9e-1783.02Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_019G059500 PE=2 ... [more]
A0A0D2SX414.9e-1672.73Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G219300 PE=4 ... [more]
A0A5D2KMT94.9e-1672.73Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D06G239100v1 P... [more]
A0A5D2Q9E34.9e-1672.73Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A06G215300v1 P... [more]
A0A5J5VGI34.9e-1672.73Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A06G195400v1 PE... [more]
BLAST of Lcy09g002520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578485.12.9e-2394.74hypothetical protein SDJN03_22933, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF3433259.17.0e-1780.00hypothetical protein FNV43_RR24361 [Rhamnella rubrinervis][more]
ABK93367.12.0e-1683.02unknown [Populus trichocarpa] >ABK93644.1 unknown [Populus trichocarpa] >ABK9545... [more]
KAB2026486.11.0e-1572.73hypothetical protein ES319_D06G222600v1 [Gossypium barbadense] >KAG4143421.1 hyp... [more]
KAB2078920.11.0e-1572.73hypothetical protein ES319_A06G195400v1 [Gossypium barbadense] >KAG4196580.1 hyp... [more]
BLAST of Lcy09g002520 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G40765.13.8e-1359.26unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g002520.1Lcy09g002520.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane