Lcy09g002450 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g002450
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S26
Location	Chr09: 1979456 .. 1981535 (-)
RNA-Seq Expression	Lcy09g002450
Synteny	Lcy09g002450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTAGGTCACCTTCTGGTCCTCTTCATATAAAAGGATCACTACTGCCCATTCATAAACCCTAATTCAGCCGACGAGCTCTCTGATTCTCTCTGGTTCGCTCGTCCATCTGAAAGACTAGAACCATGGTAACTGATCCTTCAGCCCTCTGTTTTGATCCTTCGTGTTCGTCTAGTATTTTTCTTTGACAGTTTCTCCTTCGGTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGTACCTAGTGTTTTTTCCTATTTCGCCTTGATATGTCCTGTCGACGTTGATGAATAGGTTTAGGCTTACCGTTCTATTGCTTTCTTTGATCTGTAGCGGCTAGACAATGTATAACCATCTGAAATTTTCACGCGACGCCTGTTCAATATAGTTGCTACTGATTTCGTCCTATCATTGAACTAAGATACGAGTAATTCACCATCGAGTTTTTATTTCCCTGTTCTCTTGTTGGCATTCCTGGTCCTTTTGTGTCATATAGGCTAAGATTTTATTACATACTTGCAATACTGTGTGTGATTTTGGCATACTGTTCGGTATAGAGTTTCTAATGTTGGGATTTCTTATTGCCGCGAATAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTCCAGGAAGCCTGTGTTTATGATCGTATGATCCTTTCTTGAGCGCATTCTTTCTATGTCTTCCGGCTTCCGCCAATGCAACTTGAATGATAATCTCAATGTTTGTTTTCGGTGCAGAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAACCGTGAGCCTCCACAGCGCTTCATTAGACGCAGGGTATATTTTGATTCATCTTATTGTTCTTTATTGTTCTTTCATTTGATTCACTTTCTAGGGTTGCGATGATTAATTATATATTGTGTCTTTCTAAAAAAAGTACATAAGCCCGTGTCTGGCATTTTCCTTTTTCTCTTCTATTATTCTAGCTTTCGCTGATGCATAATTAGCTTCTCATTTATAACTGTTTTTGAATTGATTCTTGAGCTATTTAATAACTCCCGTTGCCCAGTGTTATATGGCTAGTTCACGAACCTACCCGTCTTTATTCTGCCATATATGTCTTACATTTTCAATTCAATCTCCGTCTTTATTGCTAATCATGATGAATCTAGCCTTGAAGATGTCCATACTCATGTGTAATGACTTGTCATTTTCGGGTCATGAGTCCTCTAGTACACATTCATAGTGCTGGCCCTCTGGTTTGTCTTTCAAATAAGTCTCAATTAGAACTTGACTTGAAGGTTACTATTCTGCTTACTTGGTATTTGATGGTACTTTAGAAGATGAGGTTGCTGTTTTGTTAGTTTAGTTATATGGATAAGTTATGTTCGTGCGTAGCTGCTCACTCAATTCTGAATTCGTTTCTATTGTTTTCTCCACTTACAAATCCGTTTCTATTGTTGGTGCTTAGTTTTTTGTTTGAATTTGGTCAATGTTTTCTCAGGATGATCTGCCAAAGCCTGGACAGCCAGGACAGGCCCCTCGTGTTGGAGCTGGAACTGCACCCCGTGCTTGAAGGAACCTCTTATATGCTATTTAATTTTCTCATGGTTTCTCAAATTTCTCGGACTTCAATTCCATTTAGGATTTTTCAATATATTTTGAGGGTTCTGTTTTGAGTATCGAATTATGCTGTACTTCTGAAATCTGATCAATTTTTGGTTTAACAGGATCTACTTGAACATTTTGATTGTTCTCGTCATGACTCAATGATCTATCTATCCTGTCTCTCAAATCTCTTTTTACTCCTAGTACACAATTCAGAACTAAGTTCAGGGTTTAAAAAATAAAAGTAACACGTGGATCTTGTAGCGTATCAAATGTTTTGCTGGGTGTATCTTTGTGAGAGCCCCCCACTCCACACAATTTAAAGCTATCACGGAATAACA

mRNA sequence

CGCTAGGTCACCTTCTGGTCCTCTTCATATAAAAGGATCACTACTGCCCATTCATAAACCCTAATTCAGCCGACGAGCTCTCTGATTCTCTCTGGTTCGCTCGTCCATCTGAAAGACTAGAACCATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTCCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAACCGTGAGCCTCCACAGCGCTTCATTAGACGCAGGGATGATCTGCCAAAGCCTGGACAGCCAGGACAGGCCCCTCGTGTTGGAGCTGGAACTGCACCCCGTGCTTGAAGGAACCTCTTATATGCTATTTAATTTTCTCATGGTTTCTCAAATTTCTCGGACTTCAATTCCATTTAGGATTTTTCAATATATTTTGAGGGTTCTGTTTTGAGTATCGAATTATGCTGTACTTCTGAAATCTGATCAATTTTTGGTTTAACAGGATCTACTTGAACATTTTGATTGTTCTCGTCATGACTCAATGATCTATCTATCCTGTCTCTCAAATCTCTTTTTACTCCTAGTACACAATTCAGAACTAAGTTCAGGGTTTAAAAAATAAAAGTAACACGTGGATCTTGTAGCGTATCAAATGTTTTGCTGGGTGTATCTTTGTGAGAGCCCCCCACTCCACACAATTTAAAGCTATCACGGAATAACA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATTGTGGAGCAGGCAGCTGTTAGGGATGTCCAGGAAGCCTGTGTTTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAACCGTGAGCCTCCACAGCGCTTCATTAGACGCAGGGATGATCTGCCAAAGCCTGGACAGCCAGGACAGGCCCCTCGTGTTGGAGCTGGAACTGCACCCCGTGCTTGA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRVGAGTAPRA

Homology

[Close]

BLAST of Lcy09g002450 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.2e-55
Identity = 108/130 (83.08%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 --GAGTAPRA 129
             GA  APRA
Sbjct: 121 AGGAPAAPRA 130

[Close]

BLAST of Lcy09g002450 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 8.9e-55
Identity = 107/130 (82.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 --VGAGTAPR 128
              GA  APR
Sbjct: 121 AGPGAAAAPR 130

[Close]

BLAST of Lcy09g002450 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 3.4e-54
Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 VGAGTAPRA 129
            G G A  A
Sbjct: 121 AGPGAAAAA 129

[Close]

BLAST of Lcy09g002450 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-48
Identity = 96/127 (75.59%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQP-GQAPR 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R PP+RF RRR+D P+  +P G AP 
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPGGGAPA 120

Query: 121 VGAGTAP 127
            G   AP
Sbjct: 121 PGGAAAP 126

[Close]

BLAST of Lcy09g002450 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.4e-38
Identity = 79/118 (66.95%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAP 119
           QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF  +R    +PG PG  P
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPGPRP 117

[Close]

BLAST of Lcy09g002450 vs. ExPASy TrEMBL
Match: A0A6J1BXZ8 (40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 4.4e-65
Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PPQRFIRRRDD PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGTAPR 128
           GAGTAPR
Sbjct: 121 GAGTAPR 127

[Close]

BLAST of Lcy09g002450 vs. ExPASy TrEMBL
Match: A0A5A7UA01 (40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001770 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDD PKPGQPGQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGTAP 127
           GAG AP
Sbjct: 121 GAGGAP 126

[Close]

BLAST of Lcy09g002450 vs. ExPASy TrEMBL
Match: A0A1S3C4P8 (40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 4.9e-64
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDD PKPGQPGQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGTAP 127
           GAG AP
Sbjct: 121 GAGGAP 126

[Close]

BLAST of Lcy09g002450 vs. ExPASy TrEMBL
Match: A0A6J1JRW7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDD+PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAG 124
           GAG
Sbjct: 121 GAG 123

[Close]

BLAST of Lcy09g002450 vs. ExPASy TrEMBL
Match: A0A6J1E9V7 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.4e-63
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDD+PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAG 124
           GAG
Sbjct: 121 GAG 123

[Close]

BLAST of Lcy09g002450 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia])

HSP 1 Score: 256.9 bits (655), Expect = 9.1e-65
Identity = 124/127 (97.64%), Postives = 125/127 (98.43%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR R+PPQRFIRRRDD PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGTAPR 128
           GAGTAPR
Sbjct: 121 GAGTAPR 127

[Close]

BLAST of Lcy09g002450 vs. NCBI nr
Match: XP_038884330.1 (40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosomal protein S26-3-like [Benincasa hispida])

HSP 1 Score: 255.8 bits (652), Expect = 2.0e-64
Identity = 124/126 (98.41%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDD PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGTAP 127
           GAG AP
Sbjct: 121 GAGGAP 126

[Close]

BLAST of Lcy09g002450 vs. NCBI nr
Match: XP_008456772.1 (PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa] >TYK04549.1 40S ribosomal protein S26-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 123/126 (97.62%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDD PKPGQPGQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGTAP 127
           GAG AP
Sbjct: 121 GAGGAP 126

[Close]

BLAST of Lcy09g002450 vs. NCBI nr
Match: XP_022923523.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023529343.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.9 bits (642), Expect = 2.9e-63
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDD+PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAG 124
           GAG
Sbjct: 121 GAG 123

[Close]

BLAST of Lcy09g002450 vs. NCBI nr
Match: KAG6602587.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDD+PKPGQPG APRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGPAPRV 120

Query: 121 GAG 124
           GAG
Sbjct: 121 GAG 123

[Close]

BLAST of Lcy09g002450 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 214.9 bits (546), Expect = 3.7e-56
Identity = 108/130 (83.08%), Postives = 114/130 (87.69%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 --GAGTAPRA 129
             GA  APRA
Sbjct: 121 AGGAPAAPRA 130

[Close]

BLAST of Lcy09g002450 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 6.3e-56
Identity = 107/130 (82.31%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 --VGAGTAPR 128
              GA  APR
Sbjct: 121 AGPGAAAAPR 130

[Close]

BLAST of Lcy09g002450 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 212.2 bits (539), Expect = 2.4e-55
Identity = 106/129 (82.17%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDLPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 VGAGTAPRA 129
            G G A  A
Sbjct: 121 AGPGAAAAA 129

The following BLAST results are available for this feature:

BLAST of Lcy09g002450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	5.2e-55	83.08	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	8.9e-55	82.31	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	3.4e-54	82.17	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	1.2e-48	75.59	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	3.4e-38	66.95	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of Lcy09g002450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXZ8	4.4e-65	97.64	40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV...	[more]
A0A5A7UA01	4.9e-64	97.62	40S ribosomal protein S26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3C4P8	4.9e-64	97.62	40S ribosomal protein S26 OS=Cucumis melo OX=3656 GN=LOC103496615 PE=3 SV=1	[more]
A0A6J1JRW7	1.4e-63	98.37	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1	[more]
A0A6J1E9V7	1.4e-63	98.37	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=...	[more]

BLAST of Lcy09g002450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134511.1	9.1e-65	97.64	40S ribosomal protein S26-1-like [Momordica charantia]	[more]
XP_038884330.1	2.0e-64	98.41	40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosom...	[more]
XP_008456772.1	1.0e-63	97.62	PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo] >KAA0052010.1 40S rib...	[more]
XP_022923523.1	2.9e-63	98.37	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S riboso...	[more]
KAG6602587.1	1.5e-62	97.56	40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy09g002450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	3.7e-56	83.08	Ribosomal protein S26e family protein	[more]
AT2G40590.1	6.3e-56	82.31	Ribosomal protein S26e family protein	[more]
AT2G40510.1	2.4e-55	82.17	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..114 e-value: 6.4E-59 score: 199.4
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 1..105 e-value: 7.3E-55 score: 184.0
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 1..128
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..128
None	No IPR available	PANTHER	PTHR12538:SF18	40S RIBOSOMAL PROTEIN S26	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g002450.1	Lcy09g002450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004784	superoxide dismutase activity