Lcy09g002440 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g002440
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr09: 1977136 .. 1977711 (+)
RNA-Seq ExpressionLcy09g002440
SyntenyLcy09g002440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCACATCTCCCATTTGTTTCTTCCTCTCAAAGTTTCAGACTTTTTGTTCTTCAATGGCGAAGCTCTTCAAAGTCACAAAATTGTTCTTCGTTCTTGCTCTCATTCTTTTCCTCTCTGTTTCTTCTTCTTCGGCCAGACTGTTGCGCGATCCATCTCTTTCCGCCGTGCCGGAGTTGAAACTTGATATTCCGGCGGATCCGGCGGCGGCCCTGTCGAGGGAGTATGGGGCTCTGCTTTTGGGGTTTCTGCCGAAAGGGGGAATTCCGTCGTCGGGGCCGAGCAAAGGGACCAACGACTTCAACAGTTAGAATTTTTTTGATCTGTGTCTGGTTTAGTGTAATGCTAATTATCTGTTATGTAAAAGTGTAAATACTCATTAAAAAGTGACGTAGATTAAGAGGAGAGGTCTGATATTTCATTCATTCATTGTTTCATAATTATGCAAATTATTTGTAATATTAATGTCCACTGATCTACTTTTCTGTTATCTATCATTGGATTATTATGTTTTAAAGTTTCTGTGCATTTTTTTTAGTACAAAACTCCAGATCTCTGGAAAAAATCGTATCAGGGA

mRNA sequence

CTTCACATCTCCCATTTGTTTCTTCCTCTCAAAGTTTCAGACTTTTTGTTCTTCAATGGCGAAGCTCTTCAAAGTCACAAAATTGTTCTTCGTTCTTGCTCTCATTCTTTTCCTCTCTGTTTCTTCTTCTTCGGCCAGACTGTTGCGCGATCCATCTCTTTCCGCCGTGCCGGAGTTGAAACTTGATATTCCGGCGGATCCGGCGGCGGCCCTGTCGAGGGAGTATGGGGCTCTGCTTTTGGGGTTTCTGCCGAAAGGGGGAATTCCGTCGTCGGGGCCGAGCAAAGGGACCAACGACTTCAACAGTTAGAATTTTTTTGATCTGTGTCTGGTTTAGTGTAATGCTAATTATCTGTTATGTAAAAGTGTAAATACTCATTAAAAAGTGACGTAGATTAAGAGGAGAGGTCTGATATTTCATTCATTCATTGTTTCATAATTATGCAAATTATTTGTAATATTAATGTCCACTGATCTACTTTTCTGTTATCTATCATTGGATTATTATGTTTTAAAGTTTCTGTGCATTTTTTTTAGTACAAAACTCCAGATCTCTGGAAAAAATCGTATCAGGGA

Coding sequence (CDS)

ATGGCGAAGCTCTTCAAAGTCACAAAATTGTTCTTCGTTCTTGCTCTCATTCTTTTCCTCTCTGTTTCTTCTTCTTCGGCCAGACTGTTGCGCGATCCATCTCTTTCCGCCGTGCCGGAGTTGAAACTTGATATTCCGGCGGATCCGGCGGCGGCCCTGTCGAGGGAGTATGGGGCTCTGCTTTTGGGGTTTCTGCCGAAAGGGGGAATTCCGTCGTCGGGGCCGAGCAAAGGGACCAACGACTTCAACAGTTAG

Protein sequence

MAKLFKVTKLFFVLALILFLSVSSSSARLLRDPSLSAVPELKLDIPADPAAALSREYGALLLGFLPKGGIPSSGPSKGTNDFNS
Homology
[Close]
BLAST of Lcy09g002440 vs. ExPASy TrEMBL
Match: A0A0A0K7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 62/86 (72.09%), Postives = 66/86 (76.74%), Query Frame = 0 

Query: 1  MAKLFKVTKLFFVL-ALILFLSVSSSSARLLRDPSLSAVPELKLDIPADPAAALSREYGA 60
          MA LFK   LFF L  LIL +SVSSSSARLLR  SLS  P LKLDIPADPAA    EY +
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS--PALKLDIPADPAAPTMTEYES 60

Query: 61 LLLGFLPKGG-IPSSGPSKGTNDFNS 85
          LLLGFLPKGG IP SGPSKGTN+FN+
Sbjct: 61 LLLGFLPKGGSIPPSGPSKGTNNFNT 84

[Close]
BLAST of Lcy09g002440 vs. ExPASy TrEMBL
Match: A0A7J0GW62 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0012850 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.4e-04
Identity = 39/87 (44.83%), Postives = 48/87 (55.17%), Query Frame = 0 

Query: 6  KVTKLFFVLALILFLSVS-SSSARLLRD---PSLSAVPELKLDIPADPAAA----LSREY 65
          K + L     L +FL +S SSSARLL+D   P     P +  D P + A A    L   Y
Sbjct: 3  KPSMLCLTATLFIFLIISQSSSARLLKDSSHPCKMGQPTMSFD-PMELAVAEPKRLRSRY 62

Query: 66 GALLLGFLPKGGIPSSGPSKGTNDFNS 85
          G L L  LPKG +P SGPSKGTN+ N+
Sbjct: 63 GPLFLSMLPKGSVPPSGPSKGTNNMNN 88

[Close]
BLAST of Lcy09g002440 vs. NCBI nr
Match: KAG6578478.1 (hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.2 bits (295), Expect = 3.3e-23
Identity = 69/85 (81.18%), Postives = 73/85 (85.88%), Query Frame = 0 

Query: 1  MAKLFKVTKLFFVLALILFLSVSSSSARLLRDPSLS-AVPELKLDIPADPAAALSREYGA 60
          MAKLFKV KLFFV A+ILF+S SSSSARLLRD SLS AVPELKLDIP    AALSREYG 
Sbjct: 1  MAKLFKVPKLFFVFAVILFISASSSSARLLRDQSLSAAVPELKLDIP----AALSREYGP 60

Query: 61 LLLGFLPKGGIPSSGPSKGTNDFNS 85
          L+LGFLPKG IP SGPSKGTNDFN+
Sbjct: 61 LILGFLPKGRIPPSGPSKGTNDFNT 81

[Close]
BLAST of Lcy09g002440 vs. NCBI nr
Match: KAG6602588.1 (hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0 

Query: 1  MAKLFKVTKLFFVLALILFLSV-SSSSARLLRDPSLS--AVPELKLDIPADPAAALSREY 60
          MA LFK++K   VLALIL LSV SSSSARLLRD SLS  A+P+LKLD PAD   AL+ EY
Sbjct: 1  MANLFKLSKFISVLALILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADHTTALAVEY 60

Query: 61 GALLLGFLPKGGIPSSGPSKGTNDFNS 85
          GALLLGFLPKGGIP SGPSKGTN+ NS
Sbjct: 61 GALLLGFLPKGGIPPSGPSKGTNNLNS 87

[Close]
BLAST of Lcy09g002440 vs. NCBI nr
Match: KGN45830.1 (hypothetical protein Csa_005505 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 3.6e-17
Identity = 62/86 (72.09%), Postives = 66/86 (76.74%), Query Frame = 0 

Query: 1  MAKLFKVTKLFFVL-ALILFLSVSSSSARLLRDPSLSAVPELKLDIPADPAAALSREYGA 60
          MA LFK   LFF L  LIL +SVSSSSARLLR  SLS  P LKLDIPADPAA    EY +
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS--PALKLDIPADPAAPTMTEYES 60

Query: 61 LLLGFLPKGG-IPSSGPSKGTNDFNS 85
          LLLGFLPKGG IP SGPSKGTN+FN+
Sbjct: 61 LLLGFLPKGGSIPPSGPSKGTNNFNT 84

The following BLAST results are available for this feature:
BLAST of Lcy09g002440 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g002440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7U21.7e-1772.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1[more]
A0A7J0GW626.4e-0444.83Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0012850 PE=4 SV=1[more]
BLAST of Lcy09g002440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578478.13.3e-2381.18hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602588.11.3e-1974.71hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN45830.13.6e-1772.09hypothetical protein Csa_005505 [Cucumis sativus][more]
BLAST of Lcy09g002440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g002440.1Lcy09g002440.1mRNA