Lcy09g002350 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g002350
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	HIG1 domain-containing protein
Location	Chr09: 1900788 .. 1901827 (-)
RNA-Seq Expression	Lcy09g002350
Synteny	Lcy09g002350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAACCAAGGTTTAGAGGAGCATCCAACGGCTGAGAGTGAGAAATAGAAAATGAGAGGAAAATTTTGAGAAGAAACCGGAAAACGGAAAGCCTCTAGTTTCGAAGAAAAACAGAGGAATCTCTGTAAAACCAAGGGGCTGGGGCCACACCATACATAAACCACTGAACTACTCCACTCATTATATATATATAAATCTTCTTCTCTTCCTTCTTCCCTCCCTCCTCATTGCAATCTCCACACACGAACTCAGTTTTCAAATACAATACAACAATGGAAGCCGTTCAAGCTTGGGTTTCTGAACACAAACTCACCAGCATTGGTCAGTCTCCTTTTCATCTTCCAAAAATATAAAAGAATTTTGTTTCCACTCTTTTAGTAGATAAGTATTTGGTATAAAAAATGTTTATAATTAATTTCACTGTCTTAATTTAAAAAAATTTGGGTGTAGGAGCACTGTGGGCATCTGGGATCGGAGCATCACTGGTCTATACCCGATCGAGGACTCCTCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGTAAATACACAACAAAATTCAATTCAATGGACACTCCCGATTTCTTTTTCTTTAAAACTCAATTGGGTCGATGTTTGTTTTTGACAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCTGACCGATCTGAAGTTCCAGCTTCTGCCCTGCCGGCGAAGTAGAATCACCGCCGTACCGGGCTGGGAGGAAAAGGGAATGGATAAGCCGAGATGGTAAGGGGATCGATCGATCGATTTGTGTAAATTAAGTCAAGGATATTAGATCCGACCCCTTTTTTTCTTATTGATTTATGTGTAGCCATGGATGGCAGAATTTTAAGCTGGTGATTCGGCTTCTATCTTGCTACTACTCCTTAACTAGAATTTATATTTTAAAATACTTTTAAACAATACTTCCTTTTGTTTCTCAATATGTTATTTTAATATATAATTTTGCCCAACATTAAAAAAC

mRNA sequence

GAAGAAACCAAGGTTTAGAGGAGCATCCAACGGCTGAGAGTGAGAAATAGAAAATGAGAGGAAAATTTTGAGAAGAAACCGGAAAACGGAAAGCCTCTAGTTTCGAAGAAAAACAGAGGAATCTCTGTAAAACCAAGGGGCTGGGGCCACACCATACATAAACCACTGAACTACTCCACTCATTATATATATATAAATCTTCTTCTCTTCCTTCTTCCCTCCCTCCTCATTGCAATCTCCACACACGAACTCAGTTTTCAAATACAATACAACAATGGAAGCCGTTCAAGCTTGGGTTTCTGAACACAAACTCACCAGCATTGGAGCACTGTGGGCATCTGGGATCGGAGCATCACTGGTCTATACCCGATCGAGGACTCCTCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCTGACCGATCTGAAGTTCCAGCTTCTGCCCTGCCGGCGAAGTAGAATCACCGCCGTACCGGGCTGGGAGGAAAAGGGAATGGATAAGCCGAGATGGTAAGGGGATCGATCGATCGATTTGTGTAAATTAAGTCAAGGATATTAGATCCGACCCCTTTTTTTCTTATTGATTTATGTGTAGCCATGGATGGCAGAATTTTAAGCTGGTGATTCGGCTTCTATCTTGCTACTACTCCTTAACTAGAATTTATATTTTAAAATACTTTTAAACAATACTTCCTTTTGTTTCTCAATATGTTATTTTAATATATAATTTTGCCCAACATTAAAAAAC

Coding sequence (CDS)

ATGGAAGCCGTTCAAGCTTGGGTTTCTGAACACAAACTCACCAGCATTGGAGCACTGTGGGCATCTGGGATCGGAGCATCACTGGTCTATACCCGATCGAGGACTCCTCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGCTGACCGATCTGAAGTTCCAGCTTCTGCCCTGCCGGCGAAGTAG

Protein sequence

MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKKAAADRSEVPASALPAK

Homology

[Close]

BLAST of Lcy09g002350 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QAWVSEHKLT+IGALWASGIGASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVP 80
          AAVYHYY+ K   DRSE P
Sbjct: 61 AAVYHYYDNKIGRDRSEAP 79

[Close]

BLAST of Lcy09g002350 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.3e-30
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QAWVSEHKLT+IGALWASG+GASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVP 80
          AAVYHYY+ K   DRSE P
Sbjct: 61 AAVYHYYDNKFGNDRSEAP 79

[Close]

BLAST of Lcy09g002350 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.2e-26
Identity = 62/70 (88.57%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVSEHKLTSIG LWASGIGASL Y+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYEKK 71
           AAVYHYYEK+
Sbjct: 98  AAVYHYYEKR 107

[Close]

BLAST of Lcy09g002350 vs. ExPASy TrEMBL
Match: A0A540LHQ1 (HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.0e-26
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+Q+WVSEHKLTSIG +WAS +GASL Y+++RTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGGIWASAVGASLAYSKTRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADR 76
          AAVYHYYE+  AA R
Sbjct: 61 AAVYHYYEEHEAAAR 75

[Close]

BLAST of Lcy09g002350 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.9e-26
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+Q+WVSEHKLTSIG LWAS IGASL Y+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKA 72
          AA YHYYEK+A
Sbjct: 61 AAAYHYYEKRA 71

[Close]

BLAST of Lcy09g002350 vs. NCBI nr
Match: KAG7033273.1 (hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.5 bits (371), Expect = 5.2e-32
Identity = 76/88 (86.36%), Postives = 82/88 (93.18%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QAW+SEHKLTSIGALWASGIGASLVYT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYY--EKKAAADRSEVPASALPAK 87
          AAVYHYY  EKK  ADR++V ASA+P K
Sbjct: 61 AAVYHYYEKEKKGVADRTKVSASAVPGK 88

[Close]

BLAST of Lcy09g002350 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QAWVS+HKLTSIGALWASGIGASL YTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVPASAL 84
          AAVYHYYE K+A  RSE P SA+
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAV 83

[Close]

BLAST of Lcy09g002350 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 72/83 (86.75%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QAWVS+HKLTSIGALWASGIGASL YTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVPASAL 84
          AAVYHYYE K+A  RSE P SA+
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAV 83

[Close]

BLAST of Lcy09g002350 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 70/79 (88.61%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QAWVSEHKLT+IGALWASGIGASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVP 80
          AAVYHYY+ K   DRSE P
Sbjct: 61 AAVYHYYDNKIGRDRSEAP 79

[Close]

BLAST of Lcy09g002350 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-29
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 1  MEAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QAWVSEHKLT+IGALWASG+GASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAADRSEVP 80
          AAVYHYY+ K   DRSE P
Sbjct: 61 AAVYHYYDNKFGNDRSEAP 79

[Close]

BLAST of Lcy09g002350 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 83.6 bits (205), Expect = 8.7e-17
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 0


Query: 2  EAVQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E ++ WVS+HKL ++G LW SGI  S+ Y  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYEKKAAA 74
          AV  YY+ K  A
Sbjct: 69 AVVEYYDHKTEA 80

[Close]

BLAST of Lcy09g002350 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-16
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 4  VQAWVSEHKLTSIGALWASGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          ++ W+ EHKL ++G LW SGI  S+ Y  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYEKKAAA 74
            YY+ K+ A
Sbjct: 71 VEYYDHKSGA 80

The following BLAST results are available for this feature:

BLAST of Lcy09g002350 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g002350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	1.4e-30	88.61	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	5.3e-30	87.34	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	1.2e-26	88.57	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A540LHQ1	6.0e-26	81.33	HIG1 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_028432 PE=4 S...	[more]
A0A5J5AU49	7.9e-26	85.92	HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ...	[more]

BLAST of Lcy09g002350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033273.1	5.2e-32	86.36	hypothetical protein SDJN02_07327, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6578469.1	1.3e-30	86.75	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	1.3e-30	86.75	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004138401.1	2.9e-30	88.61	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAA0052029.1	1.1e-29	87.34	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]

BLAST of Lcy09g002350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	8.7e-17	54.17	Hypoxia-responsive family protein	[more]
AT5G27760.1	2.5e-16	52.86	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 2.6E-8 score: 33.9
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 19.536722
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..71 e-value: 1.4E-6 score: 30.0
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g002350.1	Lcy09g002350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome