Lcy09g002330 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g002330
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transcription factor bHLH61-like protein
Location	Chr09: 1885502 .. 1887186 (+)
RNA-Seq Expression	Lcy09g002330
Synteny	Lcy09g002330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAGAAAAAAAAAAAAGCACAAGAGGAAGAAGAAGGCTGAAAAAGATATAAAGAGATCAAAAAGAAAAAGGTGGAATCCATGGTTTCTAGAGAGCACAAGAAGGCAGCTCTGCATGAGAAGCTTCAATTACTTCGTTCTATTACCAACTCTCATGCTGTAAATTCCCTCTCCCATTTCTCAATCTCTTTTCTTTATTCGTACTTCTCTCGGATATTTTCTTTCCAATCGAATTTAAACAAGATCTATGTTCGAATTTTCCTTTACTTTTCTATTTTTTTGGAAAAAGATTCGACTTTTGTGTATGTGAGAAACATACGACAAAGAAAGTTTTGTTTTGATCATCAAAAACTTCTTCTAATTGTGTGCCTTTTCATTTGGGAACTTATGAATTGTGGGAATTCAAAGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTAAGTTGTTTTGGAAAAAATGTTGATATATATGATTCGAAAAATGGGAAGGGAAAAAAAATGGGAAGCAATGATTTTCTAACAGAAAAAGTTTTGATTTTGTGTGTGTGGCAGCTAAACAAGGCCTCGATTATAGTGGATGCATCAAAATATATCGAGGAGCTAAAACAGAAAGTAGAAAGATTGAATCAAGATATAGCAACCGTTCAAAATTCAATCCACCCAAATCCACTTTCTCATCATCATCCCATGGTATTTAATTAATTAATTAATTCCCAATCAATAATAACAACATTATATATTTACATCTAAATTAATCAACTTTTTTCCATTTTAATTCCATTTTCCAATCTGGGTTTTCTTTTTTTTTTTAAAAAAAAAATGAATCTGAGGGTGTTTGTAGTAAAACTTACCCATTTGTTTGTATGTGTTGTAGCAGGTTACAGTGGAAACCCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAAAGCTGTCAAGGCCTCCTTGTCTCAGTATTAGAAGCCTTTGAAGAGCTGGGGCTTAATGTTATTGAAGCTAGGGTTTCCTGTACTGATAGTTTCCAATTACAAGCTATTGGAGAAGTAAGATTTTCCAAACTCTCTTCTTTCTATATATATGCATATACATATATATTTTATCACCATCATCATCATCAAATATAATATATAATATATGTTTATATATTTATATTCTGTCACAACCTTGTAGTACTTCCATCCATGACTAATTCTTTCATGCATAATTGAGTGTTTTTTTTTTTTTTTCCTTACGATTATTCTAAAGGTCGAGAAAGTCAAATCAATCATTAATTTTATCAAGGTTATTTTACCTAAAGTACTAGAATTTTCCATCTAATCATACACTTCAGTGTCGGGTTTTATATTGGAAAATTGAATTTAGATTAAGATCTTTATTCGTAAATGTGTAAATTGAAATGGGGTTTTGGAATTTTTGTAGATTGACGAACAAGGAGAAGAAGCCATTGATGCTCAAGCTGTGAAAGAAGCAGTAGTTCAAGCTATAAAGAACTGGAGCCAAAGCGGTGAACAAGATTAAAAAAAAAAAAATCAACTCTTCAAGAAGGAGAATTAAAAAAAGAAAATCCTTAATTTCTCCAACTTTTTTCCAATCGCGGCTTTTTTTTTTTTTTTTTTTCCTTCTTTTGTTCTTACTTCTCTCTCTGTTTGTAATGTAGTAAAAATTAATCAATGGAAAAACCGAT

mRNA sequence

AAAAAAAGAAAAAAAAAAAAGCACAAGAGGAAGAAGAAGGCTGAAAAAGATATAAAGAGATCAAAAAGAAAAAGGTGGAATCCATGGTTTCTAGAGAGCACAAGAAGGCAGCTCTGCATGAGAAGCTTCAATTACTTCGTTCTATTACCAACTCTCATGCTCTAAACAAGGCCTCGATTATAGTGGATGCATCAAAATATATCGAGGAGCTAAAACAGAAAGTAGAAAGATTGAATCAAGATATAGCAACCGTTCAAAATTCAATCCACCCAAATCCACTTTCTCATCATCATCCCATGCAGGTTACAGTGGAAACCCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAAAGCTGTCAAGGCCTCCTTGTCTCAGTATTAGAAGCCTTTGAAGAGCTGGGGCTTAATGTTATTGAAGCTAGGGTTTCCTGTACTGATAGTTTCCAATTACAAGCTATTGGAGAAATTGACGAACAAGGAGAAGAAGCCATTGATGCTCAAGCTGTGAAAGAAGCAGTAGTTCAAGCTATAAAGAACTGGAGCCAAAGCGGTGAACAAGATTAAAAAAAAAAAAATCAACTCTTCAAGAAGGAGAATTAAAAAAAGAAAATCCTTAATTTCTCCAACTTTTTTCCAATCGCGGCTTTTTTTTTTTTTTTTTTTCCTTCTTTTGTTCTTACTTCTCTCTCTGTTTGTAATGTAGTAAAAATTAATCAATGGAAAAACCGAT

Coding sequence (CDS)

ATGGTTTCTAGAGAGCACAAGAAGGCAGCTCTGCATGAGAAGCTTCAATTACTTCGTTCTATTACCAACTCTCATGCTCTAAACAAGGCCTCGATTATAGTGGATGCATCAAAATATATCGAGGAGCTAAAACAGAAAGTAGAAAGATTGAATCAAGATATAGCAACCGTTCAAAATTCAATCCACCCAAATCCACTTTCTCATCATCATCCCATGCAGGTTACAGTGGAAACCCTAGTAAAGGGATTTTCTATAAATGTATTTTCAGAAAAAAGCTGTCAAGGCCTCCTTGTCTCAGTATTAGAAGCCTTTGAAGAGCTGGGGCTTAATGTTATTGAAGCTAGGGTTTCCTGTACTGATAGTTTCCAATTACAAGCTATTGGAGAAATTGACGAACAAGGAGAAGAAGCCATTGATGCTCAAGCTGTGAAAGAAGCAGTAGTTCAAGCTATAAAGAACTGGAGCCAAAGCGGTGAACAAGATTAA

Protein sequence

MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNSIHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTDSFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD

Homology

[Close]

BLAST of Lcy09g002330 vs. ExPASy Swiss-Prot
Match: Q9LXA9 (Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 43/155 (27.74%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDIATVQN 60
           +++   ++  L+++L LLRSI      +++ SI+ DA  Y++EL  K+ +L +D   + +
Sbjct: 153 LMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGS 212

Query: 61  SIHPNPLSHHHPM-QVTVETLVKGFSINVFSEKSC---QGLLVSVLEAFEELGLNVIEAR 120
           + H + L  +  M + +++  V    +N   +  C    GL+VS +   E LGL + +  
Sbjct: 213 NSHLSTLITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCV 272

Query: 121 VSCTDSFQLQA-IGEIDEQGEEAIDAQAVKEAVVQ 150
           +SC   F LQA   E+ EQ    + ++A K+A+++
Sbjct: 273 ISCFSDFSLQASCFEVGEQ-RYMVTSEATKQALIR 306

[Close]

BLAST of Lcy09g002330 vs. ExPASy Swiss-Prot
Match: Q9LSE2 (Transcription factor ICE1 OS=Arabidopsis thaliana OX=3702 GN=SCRM PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-05
Identity = 41/172 (23.84%), Postives = 83/172 (48.26%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDIATVQN 60
           +++   ++  L+++L +LRS+      +++ASI+ DA  Y++EL Q++  L+ ++ +   
Sbjct: 309 LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPP 368

Query: 61  SIHPNPLSHHHPMQVTVETLV-----------------------------KGFSINVFSE 120
              P   S  HP+  T +TL                              +  +I++F  
Sbjct: 369 GSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHMFCG 428

Query: 121 KSCQGLLVSVLEAFEELGLNVIEARVSCTDSFQLQAI-GEIDEQGEEAIDAQ 142
           +   GLL++ ++A + LGL+V +A +SC + F L     E  ++G+E +  Q
Sbjct: 429 RR-PGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQ 479

[Close]

BLAST of Lcy09g002330 vs. ExPASy Swiss-Prot
Match: Q9LSL1 (Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 43/162 (26.54%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERL---NQDIAT 60
           +++   ++  L+++L +LRSI      +++ SI+ DA  Y++EL  K+ +L    Q++  
Sbjct: 180 LMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYMKELLDKINKLQDEEQELGN 239

Query: 61  VQNSIHPNPLSHHHPMQVTVETLVKG---FSINVFSEKS-----CQ---GLLVSVLEAFE 120
             NS H         +    E LV+    F I+   E +     C    GLL+S +   E
Sbjct: 240 SNNSHHSKLFGDLKDLNAN-EPLVRNSPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLE 299

Query: 121 ELGLNVIEARVSCTDSFQLQAIGEIDEQGEEAIDAQAVKEAV 148
            LGL + +  +SC   F LQA      +  + I ++ +K+A+
Sbjct: 300 TLGLEIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQAL 340

[Close]

BLAST of Lcy09g002330 vs. ExPASy Swiss-Prot
Match: Q9LPW3 (Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.9e-04
Identity = 41/174 (23.56%), Postives = 84/174 (48.28%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDIATV-- 60
           +++   ++  L+++L +LRS+      +++ASI+ DA  Y++EL Q++  L+ ++ +   
Sbjct: 269 LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHTELESTPP 328

Query: 61  -QNSIHP-------------------NPLSHHHPMQVTVETLV---KGFSINVFSEKSCQ 120
             +S+HP                   + L      Q  VE  +   K  +I++F  +   
Sbjct: 329 SSSSLHPLTPTPQTLSYRVKEELCPSSSLPSPKGQQPRVEVRLREGKAVNIHMFCGRR-P 388

Query: 121 GLLVSVLEAFEELGLNVIEARVSCTDSFQLQAIGEIDEQGEEAIDAQAVKEAVV 149
           GLL+S + A + LGL+V +A +SC + F L        Q +  +  + +K  ++
Sbjct: 389 GLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDVLPEQIKAVLL 441

[Close]

BLAST of Lcy09g002330 vs. ExPASy TrEMBL
Match: A0A6J1JV46 (uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487778 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 144/161 (89.44%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSREHKKAALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDIATVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTD 120
           IHPN     HPMQVTVE LVKGFSINVFSEKSCQGLLVS+LEAFEELGLNV+EARVSCTD
Sbjct: 61  IHPN-----HPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTD 120

Query: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           +FQLQA  EI+EQGEEA+DAQAVKEAVV+AIK+WSQ+GEQD
Sbjct: 121 TFQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of Lcy09g002330 vs. ExPASy TrEMBL
Match: A0A6J1HIH6 (uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464709 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 144/161 (89.44%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSREHKKAALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDIATVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTD 120
           IHPN     HPMQVTVE LVKGFSINVFSEKSCQGLLVS+LEAFEELGLNV+EARVSCTD
Sbjct: 61  IHPN-----HPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTD 120

Query: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           +FQLQA  EI+EQGEEA+DAQAVKEAVV+AIK+WSQ+GEQD
Sbjct: 121 TFQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of Lcy09g002330 vs. ExPASy TrEMBL
Match: A0A6J1JTS8 (uncharacterized protein LOC111487778 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487778 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSREHKKAALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDIATVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTD 120
           IHPN     HPM VTVE LVKGFSINVFSEKSCQGLLVS+LEAFEELGLNV+EARVSCTD
Sbjct: 61  IHPN-----HPM-VTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTD 120

Query: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           +FQLQA  EI+EQGEEA+DAQAVKEAVV+AIK+WSQ+GEQD
Sbjct: 121 TFQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 155

[Close]

BLAST of Lcy09g002330 vs. ExPASy TrEMBL
Match: A0A6J1HJR0 (uncharacterized protein LOC111464709 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111464709 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 1.2e-67
Identity = 143/161 (88.82%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSREHKKAALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDIATVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTD 120
           IHPN     HPM VTVE LVKGFSINVFSEKSCQGLLVS+LEAFEELGLNV+EARVSCTD
Sbjct: 61  IHPN-----HPM-VTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTD 120

Query: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           +FQLQA  EI+EQGEEA+DAQAVKEAVV+AIK+WSQ+GEQD
Sbjct: 121 TFQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 155

[Close]

BLAST of Lcy09g002330 vs. ExPASy TrEMBL
Match: A0A6J1C0X4 (uncharacterized protein LOC111006410 OS=Momordica charantia OX=3673 GN=LOC111006410 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.6e-66
Identity = 144/159 (90.57%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSREHKKA LHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQD   VQNS
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQD---VQNS 60

Query: 61  IHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTD 120
           IHPNPL    PM VTVETLVKGFSINVFSEKSCQGLLVS+LE FEELGLNV+EARVSCTD
Sbjct: 61  IHPNPL----PM-VTVETLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVLEARVSCTD 120

Query: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGE 160
           SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIK+WS+S E
Sbjct: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKSWSESSE 151

[Close]

BLAST of Lcy09g002330 vs. NCBI nr
Match: XP_038884497.1 (uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida])

HSP 1 Score: 280.4 bits (716), Expect = 9.7e-72
Identity = 148/162 (91.36%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSREHKKA LHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDI+TVQNS
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60

Query: 61  IHPNPLSHHH-PMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCT 120
           IHPNPLSH + PMQVTVE LVKGFSINVFSEKSCQGLLVS+LE FEELGLNVIEARVSCT
Sbjct: 61  IHPNPLSHQYSPMQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120

Query: 121 DSFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           D+FQLQAI EI+E+GEEAIDAQAVKEAVVQAIK+W QSGEQD
Sbjct: 121 DTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 162

[Close]

BLAST of Lcy09g002330 vs. NCBI nr
Match: XP_038884499.1 (uncharacterized protein LOC120075304 isoform X4 [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 8.2e-71
Identity = 145/161 (90.06%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSREHKKA LHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDI+TVQNS
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDISTVQNS 60

Query: 61  IHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTD 120
           IHPNPLSH +   VTVE LVKGFSINVFSEKSCQGLLVS+LE FEELGLNVIEARVSCTD
Sbjct: 61  IHPNPLSHQYSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCTD 120

Query: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           +FQLQAI EI+E+GEEAIDAQAVKEAVVQAIK+W QSGEQD
Sbjct: 121 TFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 161

[Close]

BLAST of Lcy09g002330 vs. NCBI nr
Match: XP_038884496.1 (uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida])

HSP 1 Score: 275.8 bits (704), Expect = 2.4e-70
Identity = 148/163 (90.80%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHA-LNKASIIVDASKYIEELKQKVERLNQDIATVQN 60
           MVSREHKKA LHEKLQLLRSITNSHA LNKASIIVDASKYIEELKQKVERLNQDI+TVQN
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHAQLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SIHPNPLSHHH-PMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSC 120
           SIHPNPLSH + PMQVTVE LVKGFSINVFSEKSCQGLLVS+LE FEELGLNVIEARVSC
Sbjct: 61  SIHPNPLSHQYSPMQVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSC 120

Query: 121 TDSFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           TD+FQLQAI EI+E+GEEAIDAQAVKEAVVQAIK+W QSGEQD
Sbjct: 121 TDTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 163

[Close]

BLAST of Lcy09g002330 vs. NCBI nr
Match: XP_038884498.1 (uncharacterized protein LOC120075304 isoform X3 [Benincasa hispida])

HSP 1 Score: 272.7 bits (696), Expect = 2.0e-69
Identity = 145/162 (89.51%), Postives = 152/162 (93.83%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHA-LNKASIIVDASKYIEELKQKVERLNQDIATVQN 60
           MVSREHKKA LHEKLQLLRSITNSHA LNKASIIVDASKYIEELKQKVERLNQDI+TVQN
Sbjct: 1   MVSREHKKAVLHEKLQLLRSITNSHAQLNKASIIVDASKYIEELKQKVERLNQDISTVQN 60

Query: 61  SIHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCT 120
           SIHPNPLSH +   VTVE LVKGFSINVFSEKSCQGLLVS+LE FEELGLNVIEARVSCT
Sbjct: 61  SIHPNPLSHQYSPMVTVERLVKGFSINVFSEKSCQGLLVSILEVFEELGLNVIEARVSCT 120

Query: 121 DSFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           D+FQLQAI EI+E+GEEAIDAQAVKEAVVQAIK+W QSGEQD
Sbjct: 121 DTFQLQAIAEIEEEGEEAIDAQAVKEAVVQAIKSWGQSGEQD 162

[Close]

BLAST of Lcy09g002330 vs. NCBI nr
Match: XP_022964712.1 (uncharacterized protein LOC111464709 isoform X1 [Cucurbita moschata] >XP_022991073.1 uncharacterized protein LOC111487778 isoform X1 [Cucurbita maxima] >XP_023527349.1 uncharacterized protein LOC111790608 isoform X1 [Cucurbita pepo subsp. pepo] >KAG7033274.1 Transcription factor SCREAM2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 144/161 (89.44%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSREHKKAALHEKLQLLRSITNSHALNK SIIVDASKYIEELKQKVERLNQDIATVQNS
Sbjct: 1   MVSREHKKAALHEKLQLLRSITNSHALNKGSIIVDASKYIEELKQKVERLNQDIATVQNS 60

Query: 61  IHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTD 120
           IHPN     HPMQVTVE LVKGFSINVFSEKSCQGLLVS+LEAFEELGLNV+EARVSCTD
Sbjct: 61  IHPN-----HPMQVTVEALVKGFSINVFSEKSCQGLLVSILEAFEELGLNVLEARVSCTD 120

Query: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQSGEQD 162
           +FQLQA  EI+EQGEEA+DAQAVKEAVV+AIK+WSQ+GEQD
Sbjct: 121 TFQLQAFAEIEEQGEEAMDAQAVKEAVVEAIKSWSQNGEQD 156

[Close]

BLAST of Lcy09g002330 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 171.8 bits (434), Expect = 4.5e-43
Identity = 99/156 (63.46%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQNS 60
           MVSRE K+ +L EK QLLRSITNSHA N  SII+DASKYI++LKQKVER NQD    Q+S
Sbjct: 1   MVSREQKRGSLQEKFQLLRSITNSHAENDTSIIMDASKYIQKLKQKVERFNQDPTAEQSS 60

Query: 61  IHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSCTD 120
               P     PM VTVETL KGF INVFS K+  G+LVSVLEAFE++GLNV+EAR SCTD
Sbjct: 61  --SEPTDPKTPM-VTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIGLNVLEARASCTD 120

Query: 121 SFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQ 157
           SF L A+G  +E GE  +DA+AVK+AV  AI++W +
Sbjct: 121 SFSLHAMGLENEDGEN-MDAEAVKQAVTDAIRSWGE 152

[Close]

BLAST of Lcy09g002330 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-39
Identity = 92/161 (57.14%), Postives = 117/161 (72.67%), Query Frame = 0


Query: 1   MVSREHKK-AALHEKLQLLRSITNSHALNKASIIVDASKYIEELKQKVERLNQDIATVQN 60
           MVSREHK+ ++L EK  LLRSIT+SHA ++ SIIVDASKYI++LKQKVE++N    + Q+
Sbjct: 1   MVSREHKRGSSLREKFHLLRSITDSHAESETSIIVDASKYIKKLKQKVEKINNATTSEQS 60

Query: 61  ---SIHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARV 120
              S  PNP+       VTVETL KGF I V S K+  G+LV VLE FE+LGL+V+EARV
Sbjct: 61  FRESSDPNPM-------VTVETLEKGFMIKVMSRKNEAGMLVCVLETFEDLGLDVVEARV 120

Query: 121 SCTDSFQLQAIGEIDEQGEEAIDAQAVKEAVVQAIKNWSQS 158
           SCTD+F L AIG  +    + IDA+AVK+AV +AI+ WS S
Sbjct: 121 SCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDS 154

[Close]

BLAST of Lcy09g002330 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-11
Identity = 45/129 (34.88%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSITN-SHALNKASIIV-DASKYIEELKQKVERLNQDIATVQ 60
           MV+ E KK A   K   L+++T+   ++++ S+++ +A  YI  LK ++E L ++   ++
Sbjct: 1   MVASEQKKRASQGKPHFLKNLTHFKFSIHEQSMVIREALLYIAMLKLEIEALQREYEDLK 60

Query: 61  NSIHPNPLSHHHPMQVTVETLVKGFSINVFSEKSCQGLLVSVLEAFEELGLNVIEARVSC 120
            +      S H   +V VE + + F + + S +  +  LV++LEAFEE+GLNV +AR SC
Sbjct: 61  IT---KKESLHQFQEVKVEKIGEMFQVKIKSPRG-ENNLVNILEAFEEMGLNVAQARASC 120

Query: 121 TDSFQLQAI 128
            DSF ++AI
Sbjct: 121 LDSFAMEAI 125

[Close]

BLAST of Lcy09g002330 vs. TAIR 10
Match: AT5G10570.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 8.1e-08
Identity = 43/155 (27.74%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDIATVQN 60
           +++   ++  L+++L LLRSI      +++ SI+ DA  Y++EL  K+ +L +D   + +
Sbjct: 153 LMAERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGS 212

Query: 61  SIHPNPLSHHHPM-QVTVETLVKGFSINVFSEKSC---QGLLVSVLEAFEELGLNVIEAR 120
           + H + L  +  M + +++  V    +N   +  C    GL+VS +   E LGL + +  
Sbjct: 213 NSHLSTLITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCV 272

Query: 121 VSCTDSFQLQA-IGEIDEQGEEAIDAQAVKEAVVQ 150
           +SC   F LQA   E+ EQ    + ++A K+A+++
Sbjct: 273 ISCFSDFSLQASCFEVGEQ-RYMVTSEATKQALIR 306

[Close]

BLAST of Lcy09g002330 vs. TAIR 10
Match: AT3G26744.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 41/172 (23.84%), Postives = 83/172 (48.26%), Query Frame = 0


Query: 1   MVSREHKKAALHEKLQLLRSIT-NSHALNKASIIVDASKYIEELKQKVERLNQDIATVQN 60
           +++   ++  L+++L +LRS+      +++ASI+ DA  Y++EL Q++  L+ ++ +   
Sbjct: 309 LMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPP 368

Query: 61  SIHPNPLSHHHPMQVTVETLV-----------------------------KGFSINVFSE 120
              P   S  HP+  T +TL                              +  +I++F  
Sbjct: 369 GSLPPTSSSFHPLTPTPQTLSCRVKEELCPSSLPSPKGQQARVEVRLREGRAVNIHMFCG 428

Query: 121 KSCQGLLVSVLEAFEELGLNVIEARVSCTDSFQLQAI-GEIDEQGEEAIDAQ 142
           +   GLL++ ++A + LGL+V +A +SC + F L     E  ++G+E +  Q
Sbjct: 429 RR-PGLLLATMKALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQ 479

The following BLAST results are available for this feature:

BLAST of Lcy09g002330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXA9	1.1e-06	27.74	Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1	[more]
Q9LSE2	1.6e-05	23.84	Transcription factor ICE1 OS=Arabidopsis thaliana OX=3702 GN=SCRM PE=1 SV=1	[more]
Q9LSL1	1.1e-04	26.54	Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1	[more]
Q9LPW3	6.9e-04	23.56	Transcription factor SCREAM2 OS=Arabidopsis thaliana OX=3702 GN=SCRM2 PE=1 SV=1	[more]

BLAST of Lcy09g002330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JV46	1.3e-69	89.44	uncharacterized protein LOC111487778 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HIH6	1.3e-69	89.44	uncharacterized protein LOC111464709 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JTS8	1.2e-67	88.82	uncharacterized protein LOC111487778 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HJR0	1.2e-67	88.82	uncharacterized protein LOC111464709 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1C0X4	6.6e-66	90.57	uncharacterized protein LOC111006410 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Lcy09g002330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884497.1	9.7e-72	91.36	uncharacterized protein LOC120075304 isoform X2 [Benincasa hispida]	[more]
XP_038884499.1	8.2e-71	90.06	uncharacterized protein LOC120075304 isoform X4 [Benincasa hispida]	[more]
XP_038884496.1	2.4e-70	90.80	uncharacterized protein LOC120075304 isoform X1 [Benincasa hispida]	[more]
XP_038884498.1	2.0e-69	89.51	uncharacterized protein LOC120075304 isoform X3 [Benincasa hispida]	[more]
XP_022964712.1	2.6e-69	89.44	uncharacterized protein LOC111464709 isoform X1 [Cucurbita moschata] >XP_0229910...	[more]

BLAST of Lcy09g002330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40435.1	4.5e-43	63.46	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	3.0e-39	57.14	transcription regulators	[more]
AT1G29270.1	2.0e-11	34.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G10570.1	8.1e-08	27.74	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G26744.1	1.2e-06	23.84	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..60
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 1..159
None	No IPR available	PANTHER	PTHR31945:SF5	TRANSCRIPTION FACTOR SCREAM-LIKE PROTEIN	coord: 1..159
None	No IPR available	CDD	cd04873	ACT_UUR-ACR-like	coord: 95..151 e-value: 0.00785107 score: 31.7497
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 4..65 e-value: 4.4E-5 score: 25.5
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 11..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g002330.1	Lcy09g002330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding