Lcy09g002220 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g002220
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	dehydration-responsive element-binding protein 2C
Location	Chr09: 1799722 .. 1800180 (-)
RNA-Seq Expression	Lcy09g002220
Synteny	Lcy09g002220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTAGAGAAGCAAGTGAAGCATGAAGATATTGAAGCTACATATCGCGATCAGAGCAATGATCAAGCATTCTTATTAGGAACTGAGTTTCCTAGTCTGGATGAGTTGCAAAACACACAAATGGATGAAATGTTTGATGTGGAGGAGCTTCTAGGCCTCATAAATGGTGATTCCATATATGATTCAAGCTTCTTGCAGGGGAATGTGAATGGTTCTAATAACATGGCGCCTTCCCAAGTTGGCAATCTTGGGTCTGAGAAACCATCAAGTTTGTCATATCAGTTCCAAAATCCCGACGCGAAGCTGCTCGGAAGTCTCCAACACATGGAGCAAGCTCCGGCCGATGTCGACTACGGATTCGACTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCTGCTGCAGATGATTGTGTTAGATACTTGAATTATGAGATGGGTGATTTGGGTTTTTGA

mRNA sequence

ATGAACTTAGAGAAGCAAGTGAAGCATGAAGATATTGAAGCTACATATCGCGATCAGAGCAATGATCAAGCATTCTTATTAGGAACTGAGTTTCCTAGTCTGGATGAGTTGCAAAACACACAAATGGATGAAATGTTTGATGTGGAGGAGCTTCTAGGCCTCATAAATGGTGATTCCATATATGATTCAAGCTTCTTGCAGGGGAATGTGAATGGTTCTAATAACATGGCGCCTTCCCAAGTTGGCAATCTTGGGTCTGAGAAACCATCAAGTTTGTCATATCAGTTCCAAAATCCCGACGCGAAGCTGCTCGGAAGTCTCCAACACATGGAGCAAGCTCCGGCCGATGTCGACTACGGATTCGACTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCTGCTGCAGATGATTGTGTTAGATACTTGAATTATGAGATGGGTGATTTGGGTTTTTGA

Coding sequence (CDS)

ATGAACTTAGAGAAGCAAGTGAAGCATGAAGATATTGAAGCTACATATCGCGATCAGAGCAATGATCAAGCATTCTTATTAGGAACTGAGTTTCCTAGTCTGGATGAGTTGCAAAACACACAAATGGATGAAATGTTTGATGTGGAGGAGCTTCTAGGCCTCATAAATGGTGATTCCATATATGATTCAAGCTTCTTGCAGGGGAATGTGAATGGTTCTAATAACATGGCGCCTTCCCAAGTTGGCAATCTTGGGTCTGAGAAACCATCAAGTTTGTCATATCAGTTCCAAAATCCCGACGCGAAGCTGCTCGGAAGTCTCCAACACATGGAGCAAGCTCCGGCCGATGTCGACTACGGATTCGACTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCTGCTGCAGATGATTGTGTTAGATACTTGAATTATGAGATGGGTGATTTGGGTTTTTGA

Protein sequence

MNLEKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDSSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF

Homology

[Close]

BLAST of Lcy09g002220 vs. ExPASy Swiss-Prot
Match: Q8LFR2 (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana OX=3702 GN=DREB2C PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-05
Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 42  MDEMFDVEELLGLINGDSIYDSSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDA 101
           +DE FD+ ELLG++N +++     +Q  V                ++  + SYQ Q P++
Sbjct: 238 VDETFDINELLGILNDNNVSGQETMQYQV----------------DRHPNFSYQTQFPNS 297

Query: 102 KLLGSLQHMEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF 153
            LLGSL  ME A   VDYG  +++    E+     D   R+ + ++ DL F
Sbjct: 298 NLLGSLNPMEIAQPGVDYGCPYVQPSDMENYGIDLDH-RRFNDLDIQDLDF 331

[Close]

BLAST of Lcy09g002220 vs. ExPASy TrEMBL
Match: A0A6J1BZ01 (dehydration-responsive element-binding protein 2C OS=Momordica charantia OX=3673 GN=LOC111006753 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.0e-56
Identity = 117/153 (76.47%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 1   MNLEKQVKHEDIEATYRDQ-SNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDS 60
           M LEKQVKHED +A   DQ SN+Q+F+ G   PS DELQN QMDE+FDVEELLGLIN D 
Sbjct: 210 MILEKQVKHEDADAKNGDQSSNEQSFISGIGIPSWDELQNFQMDEVFDVEELLGLINSDP 269

Query: 61  IYDSSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDY 120
           +YD S L+GN NGSNNM PSQVGN+G EKPS+L YQFQNPDAKLLGSLQH EQ PAD D 
Sbjct: 270 LYDPSILEGNANGSNNMMPSQVGNVGFEKPSNLLYQFQNPDAKLLGSLQHTEQTPADFDG 329

Query: 121 GFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           GFDFLKQGREED+NAAADD VRYLNYE GDLGF
Sbjct: 330 GFDFLKQGREEDMNAAADDYVRYLNYETGDLGF 362

[Close]

BLAST of Lcy09g002220 vs. ExPASy TrEMBL
Match: A0A6J1FEJ6 (dehydration-responsive element-binding protein 2C-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445007 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.2e-54
Identity = 110/149 (73.83%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 4   EKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDS 63
           +KQVK+ED +A + DQ NDQ    GTE P +D+LQN QMDEMFDV+ELLGLINGD +YD 
Sbjct: 270 KKQVKNEDNDAKHLDQRNDQTVSSGTEIPGVDDLQNFQMDEMFDVDELLGLINGDCLYDP 329

Query: 64  SFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDF 123
           S LQGNV+G N+ APSQV + GSEK SSLSYQFQNPDAKLLGSLQHMEQ+P+DVDY FDF
Sbjct: 330 SILQGNVDGFNSTAPSQVRDHGSEKASSLSYQFQNPDAKLLGSLQHMEQSPSDVDYRFDF 389

Query: 124 LKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           LKQGREED+NAAAD+ +RYLNYEM D+GF
Sbjct: 390 LKQGREEDVNAAADEYIRYLNYEMDDMGF 418

[Close]

BLAST of Lcy09g002220 vs. ExPASy TrEMBL
Match: A0A6J1FL95 (dehydration-responsive element-binding protein 2C-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445007 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.2e-54
Identity = 110/149 (73.83%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 4   EKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDS 63
           +KQVK+ED +A + DQ NDQ    GTE P +D+LQN QMDEMFDV+ELLGLINGD +YD 
Sbjct: 281 KKQVKNEDNDAKHLDQRNDQTVSSGTEIPGVDDLQNFQMDEMFDVDELLGLINGDCLYDP 340

Query: 64  SFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDF 123
           S LQGNV+G N+ APSQV + GSEK SSLSYQFQNPDAKLLGSLQHMEQ+P+DVDY FDF
Sbjct: 341 SILQGNVDGFNSTAPSQVRDHGSEKASSLSYQFQNPDAKLLGSLQHMEQSPSDVDYRFDF 400

Query: 124 LKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           LKQGREED+NAAAD+ +RYLNYEM D+GF
Sbjct: 401 LKQGREEDVNAAADEYIRYLNYEMDDMGF 429

[Close]

BLAST of Lcy09g002220 vs. ExPASy TrEMBL
Match: A0A6J1JXR9 (dehydration-responsive element-binding protein 2C-like OS=Cucurbita maxima OX=3661 GN=LOC111489255 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.7e-52
Identity = 108/149 (72.48%), Postives = 125/149 (83.89%), Query Frame = 0


Query: 4   EKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDS 63
           +KQVK+ED +A + DQ NDQ    GTE P +D+LQN QMDEMFDV+ELLGLIN D +YD 
Sbjct: 271 KKQVKNEDNDAKHLDQRNDQTVSSGTEIPGVDDLQNFQMDEMFDVDELLGLINSDCLYDP 330

Query: 64  SFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDF 123
           S LQGNV+G N+ APSQV + GSEK SSLSYQFQNPDAKLLGSLQHMEQ+PA+VD  FDF
Sbjct: 331 SILQGNVDGFNSTAPSQVSDHGSEKASSLSYQFQNPDAKLLGSLQHMEQSPANVDCRFDF 390

Query: 124 LKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           LKQGREED+NAAAD+ +RYLNYEM D+GF
Sbjct: 391 LKQGREEDVNAAADEYIRYLNYEMDDMGF 419

[Close]

BLAST of Lcy09g002220 vs. ExPASy TrEMBL
Match: A0A5A7UIC1 (Dehydration-responsive element-binding protein 2C isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001510 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.3e-49
Identity = 105/153 (68.63%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 1   MNLEKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSI 60
           ++LEKQVK ED++A YR++S+DQA L      SL +LQN +MDEMFDVEELL LI+ DS+
Sbjct: 277 LSLEKQVKDEDLDAVYRERSDDQAVLSEAGISSLYDLQNFEMDEMFDVEELLSLISSDSL 336

Query: 61  YD-SSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDY 120
           +D ++ L+GN +G  +M PSQVG++GSEKP + SYQ QNPDAKLLGS Q ME+ PADVDY
Sbjct: 337 HDPTNILKGNADGYTSMVPSQVGSIGSEKPPNSSYQMQNPDAKLLGSPQQMERTPADVDY 396

Query: 121 GFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           GFDFLKQGREEDLNAAADDCVRYLN E+GDLGF
Sbjct: 397 GFDFLKQGREEDLNAAADDCVRYLN-EIGDLGF 428

[Close]

BLAST of Lcy09g002220 vs. NCBI nr
Match: XP_022134534.1 (dehydration-responsive element-binding protein 2C [Momordica charantia])

HSP 1 Score: 228.4 bits (581), Expect = 4.1e-56
Identity = 117/153 (76.47%), Postives = 127/153 (83.01%), Query Frame = 0


Query: 1   MNLEKQVKHEDIEATYRDQ-SNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDS 60
           M LEKQVKHED +A   DQ SN+Q+F+ G   PS DELQN QMDE+FDVEELLGLIN D 
Sbjct: 210 MILEKQVKHEDADAKNGDQSSNEQSFISGIGIPSWDELQNFQMDEVFDVEELLGLINSDP 269

Query: 61  IYDSSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDY 120
           +YD S L+GN NGSNNM PSQVGN+G EKPS+L YQFQNPDAKLLGSLQH EQ PAD D 
Sbjct: 270 LYDPSILEGNANGSNNMMPSQVGNVGFEKPSNLLYQFQNPDAKLLGSLQHTEQTPADFDG 329

Query: 121 GFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           GFDFLKQGREED+NAAADD VRYLNYE GDLGF
Sbjct: 330 GFDFLKQGREEDMNAAADDYVRYLNYETGDLGF 362

[Close]

BLAST of Lcy09g002220 vs. NCBI nr
Match: XP_023549810.1 (dehydration-responsive element-binding protein 2C-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.3 bits (578), Expect = 9.2e-56
Identity = 112/149 (75.17%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 4   EKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDS 63
           +KQVK+ED +A + DQ NDQ    GT+ PS+D+LQN QMDEMFDV+ELLGLIN D +YD 
Sbjct: 271 KKQVKNEDNDAKHLDQGNDQTVSAGTKIPSVDDLQNFQMDEMFDVDELLGLINSDCLYDP 330

Query: 64  SFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDF 123
           S LQGNV+G N+ APSQVG+ GSEKPSSLSYQFQNPDAKLLGSLQHMEQ+PADVDY FDF
Sbjct: 331 SILQGNVDGFNSTAPSQVGDHGSEKPSSLSYQFQNPDAKLLGSLQHMEQSPADVDYRFDF 390

Query: 124 LKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           LKQGREED+NAAAD+ +RYLNYEM D+GF
Sbjct: 391 LKQGREEDMNAAADEYIRYLNYEMDDMGF 419

[Close]

BLAST of Lcy09g002220 vs. NCBI nr
Match: XP_023549809.1 (dehydration-responsive element-binding protein 2C-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.3 bits (578), Expect = 9.2e-56
Identity = 112/149 (75.17%), Postives = 129/149 (86.58%), Query Frame = 0


Query: 4   EKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDS 63
           +KQVK+ED +A + DQ NDQ    GT+ PS+D+LQN QMDEMFDV+ELLGLIN D +YD 
Sbjct: 282 KKQVKNEDNDAKHLDQGNDQTVSAGTKIPSVDDLQNFQMDEMFDVDELLGLINSDCLYDP 341

Query: 64  SFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDF 123
           S LQGNV+G N+ APSQVG+ GSEKPSSLSYQFQNPDAKLLGSLQHMEQ+PADVDY FDF
Sbjct: 342 SILQGNVDGFNSTAPSQVGDHGSEKPSSLSYQFQNPDAKLLGSLQHMEQSPADVDYRFDF 401

Query: 124 LKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           LKQGREED+NAAAD+ +RYLNYEM D+GF
Sbjct: 402 LKQGREEDMNAAADEYIRYLNYEMDDMGF 430

[Close]

BLAST of Lcy09g002220 vs. NCBI nr
Match: KAG7016025.1 (Dehydration-responsive element-binding protein 2C, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.6 bits (566), Expect = 2.3e-54
Identity = 110/149 (73.83%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 4   EKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDS 63
           +KQVK+ED +A + DQ NDQ    GTE P +D+LQN QMDEMFDV+ELLGLINGD +YD 
Sbjct: 281 KKQVKNEDNDAKHLDQRNDQTVSSGTEIPGVDDLQNFQMDEMFDVDELLGLINGDCLYDP 340

Query: 64  SFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDF 123
           S LQGNV+G N+ APSQVG+ GSEK SSLSYQFQNPDAKLLGSLQHM+Q+P+DVDY FDF
Sbjct: 341 SILQGNVDGFNSTAPSQVGDHGSEKASSLSYQFQNPDAKLLGSLQHMKQSPSDVDYRFDF 400

Query: 124 LKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           LKQGREED+NAAAD+ +RYLNYEM D+GF
Sbjct: 401 LKQGREEDVNAAADEYIRYLNYEMDDMGF 429

[Close]

BLAST of Lcy09g002220 vs. NCBI nr
Match: XP_022938950.1 (dehydration-responsive element-binding protein 2C-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 221.1 bits (562), Expect = 6.6e-54
Identity = 110/149 (73.83%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 4   EKQVKHEDIEATYRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDS 63
           +KQVK+ED +A + DQ NDQ    GTE P +D+LQN QMDEMFDV+ELLGLINGD +YD 
Sbjct: 281 KKQVKNEDNDAKHLDQRNDQTVSSGTEIPGVDDLQNFQMDEMFDVDELLGLINGDCLYDP 340

Query: 64  SFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDF 123
           S LQGNV+G N+ APSQV + GSEK SSLSYQFQNPDAKLLGSLQHMEQ+P+DVDY FDF
Sbjct: 341 SILQGNVDGFNSTAPSQVRDHGSEKASSLSYQFQNPDAKLLGSLQHMEQSPSDVDYRFDF 400

Query: 124 LKQGREEDLNAAADDCVRYLNYEMGDLGF 153
           LKQGREED+NAAAD+ +RYLNYEM D+GF
Sbjct: 401 LKQGREEDVNAAADEYIRYLNYEMDDMGF 429

[Close]

BLAST of Lcy09g002220 vs. TAIR 10
Match: AT2G40340.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0


Query: 42  MDEMFDVEELLGLINGDSIYDSSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDA 101
           +DE FD+ ELLG++N +++     +Q  V                ++  + SYQ Q P++
Sbjct: 238 VDETFDINELLGILNDNNVSGQETMQYQV----------------DRHPNFSYQTQFPNS 297

Query: 102 KLLGSLQHMEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF 153
            LLGSL  ME A   VDYG  +++    E+     D   R+ + ++ DL F
Sbjct: 298 NLLGSLNPMEIAQPGVDYGCPYVQPSDMENYGIDLDH-RRFNDLDIQDLDF 331

The following BLAST results are available for this feature:

BLAST of Lcy09g002220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFR2	1.5e-05	30.63	Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Lcy09g002220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ01	2.0e-56	76.47	dehydration-responsive element-binding protein 2C OS=Momordica charantia OX=3673...	[more]
A0A6J1FEJ6	3.2e-54	73.83	dehydration-responsive element-binding protein 2C-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1FL95	3.2e-54	73.83	dehydration-responsive element-binding protein 2C-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1JXR9	1.7e-52	72.48	dehydration-responsive element-binding protein 2C-like OS=Cucurbita maxima OX=36...	[more]
A0A5A7UIC1	5.3e-49	68.63	Dehydration-responsive element-binding protein 2C isoform X1 OS=Cucumis melo var...	[more]

BLAST of Lcy09g002220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134534.1	4.1e-56	76.47	dehydration-responsive element-binding protein 2C [Momordica charantia]	[more]
XP_023549810.1	9.2e-56	75.17	dehydration-responsive element-binding protein 2C-like isoform X2 [Cucurbita pep...	[more]
XP_023549809.1	9.2e-56	75.17	dehydration-responsive element-binding protein 2C-like isoform X1 [Cucurbita pep...	[more]
KAG7016025.1	2.3e-54	73.83	Dehydration-responsive element-binding protein 2C, partial [Cucurbita argyrosper...	[more]
XP_022938950.1	6.6e-54	73.83	dehydration-responsive element-binding protein 2C-like isoform X1 [Cucurbita mos...	[more]

BLAST of Lcy09g002220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40340.1	1.1e-06	30.63	Integrase-type DNA-binding superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g002220.1	Lcy09g002220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding