Lcy09g001880 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g001880
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Duplicated homeodomain-like superfamily protein
Location	Chr09: 1513901 .. 1515700 (+)
RNA-Seq Expression	Lcy09g001880
Synteny	Lcy09g001880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTTCAAATGGGTGCACATTGTCTATGGTTGGGGTTATGATTAACCTTTTAGAAAAAATATAAAAATAATCTATTTTAAACCTAACTCAACTAACATAAAGCATGTGTTTTTTACCAAGAAGTCATGAGTTCGAATACTCTCAGTCTCGACTGTTGTTGAACTAAAAAAAAATTGATTTTTCAATTAAGAAATTACAAAATAGAAAAAATAAATCTGAAACTATTTACAAATATAGTAAAATTGAACTCTATAAATATTTTTAAAAGTGGTTATATTTACCAATAATAAACTTTAAAATACTACCCATTACAATCACCCTAATTTAAATGGCATAGCTCACAAATGTTTAGTGAAGTATTTACAGAATCTTTTCCCACTTCATGTATTGAGCTGAAAATAAAAAGTCTAAATTTGTTAGGAGGGTTAGAAGTACGAATTTTATTTCTAAACTTTTAAAATTGTATTTATTTAATTTCGACATTTTGAGTCAAACATTATTTTCTTGTTTAAAGAAATATTTATCAATTAAATTAAGTTTGGATTAGTAGTTCATCCACCAACCGTATAATTTAATTAATCTTTAAAAGAATAGAATTTAACGTTCTTAAAGGCGTACTTTTTCATACCCATCCAAACAACTCTAGCAAGTAACAACATCTATATATATCTACATACTTCACCTCCTCTACAGAGATAAAGTAATCTGGAAACTGGAAAGCAAATCCCCACCTAAAAGTTTCTTGCAGGAGCACTTGTCTTCAAGATAAAGAATCGGTGATATTACTATCCCAACTCATTTTTCTCTTTGTTTCTTTTCTAATAATATGTTCATAGATAGTATTATTTCCTGATTCTTGCTGCCTCTCTAATTTGTCTATCACACGAAAAGATGGAATTCTTGATTTCACCTTTCATTTTTTTCCACTCTATTATAGGAAGTCTTCTCCCTCTGCAACGATTTTCATCGTCGTTTCTTCCAAAAAAATGTTGATCGATCTCTTTCTTGATTTCTGCAAAGATAGTTTTCGAATTAGCCATTTACAAAGACAAAATATGATATGCACATACTGTGACATTTTCCATTTCCCCAACCTAACCTTGGCTTTTCTGTATACTATGATTCTGTTCCCAAATAACAGTGAAAAAGATTTGAATTGGTTTGCTTAACAGTGTGAGATTCGATATGTCGACCTCGAATCGGTGTCCGGACAAAGAGCAGAGGAGAGAGTGGACGTTTACTGAGAATGTAGCATTTGACACGGCTCTTAGAATGTACAATGAGAAAACTCCGGACCGATGGCACAAGGTGGTGGCTTGTGTTCCATGGAAGACTCTGAGGGATGTGATCGATCATTATGCCGAATTACATGGAGAGTTATATAACATTGAAGCCGGTACAGTTCCACTTGTAAATTATGAGGCTAAGACCAATTCTGATCGGCCGACTTCCAAGAACCGGGAAACGCCTAAAGAAAAGGAAGAACACAGGCGAGTTTCCTTCACTAAACTATATGGGGATGCCTTCAAAGTTGAAACAACTCCACGTTACGATTTTTGAATGATATGTTTGTCTCATTTTAGTTACATCTTTTTTTTAATGCAGCTCCAAAGGAAGCAATGACAATTGATTCAAGCGACATCGCCCCCTTTTTTGGATCTTAACAGAGTCCTTCACATTTTAGATTTGAGAGTTTTGGCGGGCTCCATTTATTTTCTTCTTTCTTTCTTGGTTGACATACGAAGATACCATTAGAGATAATAATTACTTCATGAAATTCTGACATTTGTAGCTTTAAT

mRNA sequence

GAAGTTCAAATGGGTGCACATTGTCTATGGTTGGGGTTATGATTAACCTTTTAGAAAAAATATAAAAATAATCTATTTTAAACCTAACTCAACTAACATAAAGCATGTGTTTTTTACCAAGAAGTCATGAGTTCGAATACTCTCAGTCTCGACTGTTGTTGAACTAAAAAAAAATTGATTTTTCAATTAAGAAATTACAAAATAGAAAAAATAAATCTGAAACTATTTACAAATATAGTAAAATTGAACTCTATAAATATTTTTAAAAGTGGTTATATTTACCAATAATAAACTTTAAAATACTACCCATTACAATCACCCTAATTTAAATGGCATAGCTCACAAATGTTTAGTGAAGTATTTACAGAATCTTTTCCCACTTCATGTATTGAGCTGAAAATAAAAAGTCTAAATTTGTTAGGAGGGTTAGAAGTACGAATTTTATTTCTAAACTTTTAAAATTGTATTTATTTAATTTCGACATTTTGAGTCAAACATTATTTTCTTGTTTAAAGAAATATTTATCAATTAAATTAAGTTTGGATTAGTAGTTCATCCACCAACCGTATAATTTAATTAATCTTTAAAAGAATAGAATTTAACGTTCTTAAAGGCGTACTTTTTCATACCCATCCAAACAACTCTAGCAAGTAACAACATCTATATATATCTACATACTTCACCTCCTCTACAGAGATAAAGTAATCTGGAAACTGGAAAGCAAATCCCCACCTAAAAGTTTCTTGCAGGAGCACTTGTCTTCAAGATAAAGAATCGTGTGAGATTCGATATGTCGACCTCGAATCGGTGTCCGGACAAAGAGCAGAGGAGAGAGTGGACGTTTACTGAGAATGTAGCATTTGACACGGCTCTTAGAATGTACAATGAGAAAACTCCGGACCGATGGCACAAGGTGGTGGCTTGTGTTCCATGGAAGACTCTGAGGGATGTGATCGATCATTATGCCGAATTACATGGAGAGTTATATAACATTGAAGCCGGTACAGTTCCACTTGTAAATTATGAGGCTAAGACCAATTCTGATCGGCCGACTTCCAAGAACCGGGAAACGCCTAAAGAAAAGGAAGAACACAGCTCCAAAGGAAGCAATGACAATTGATTCAAGCGACATCGCCCCCTTTTTTGGATCTTAACAGAGTCCTTCACATTTTAGATTTGAGAGTTTTGGCGGGCTCCATTTATTTTCTTCTTTCTTTCTTGGTTGACATACGAAGATACCATTAGAGATAATAATTACTTCATGAAATTCTGACATTTGTAGCTTTAAT

Coding sequence (CDS)

ATGTCGACCTCGAATCGGTGTCCGGACAAAGAGCAGAGGAGAGAGTGGACGTTTACTGAGAATGTAGCATTTGACACGGCTCTTAGAATGTACAATGAGAAAACTCCGGACCGATGGCACAAGGTGGTGGCTTGTGTTCCATGGAAGACTCTGAGGGATGTGATCGATCATTATGCCGAATTACATGGAGAGTTATATAACATTGAAGCCGGTACAGTTCCACTTGTAAATTATGAGGCTAAGACCAATTCTGATCGGCCGACTTCCAAGAACCGGGAAACGCCTAAAGAAAAGGAAGAACACAGCTCCAAAGGAAGCAATGACAATTGA

Protein sequence

MSTSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPLVNYEAKTNSDRPTSKNRETPKEKEEHSSKGSNDN

Homology

[Close]

BLAST of Lcy09g001880 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WTF++N  F+ AL +Y++ TPDRWH V   V  KT+ +V  HY  L  +L NIE G VPL
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 76 VNYEAKTNSDR 87
           NY+   ++ R
Sbjct: 72 PNYKTFESNSR 82

[Close]

BLAST of Lcy09g001880 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-11
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WT  EN AF+ AL +++E TP+RW +V   VP KT+ DV+  Y EL  ++ +IEAG VP+
Sbjct: 26 WTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVSSIEAGFVPV 85

Query: 76 VNYEAKT 83
            Y   +
Sbjct: 86 PGYSTSS 92

[Close]

BLAST of Lcy09g001880 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-08
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WT  EN  F+ AL  Y++ TPDRWH V   V  K+  +V  HY  L  ++ +IE+G  P 
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71

Query: 76 VNYEAKTNS 85
           NY +  N+
Sbjct: 72 PNYRSNGNN 80

[Close]

BLAST of Lcy09g001880 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-08
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 14 REWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTV 73
          R W+  EN AF+ AL +Y++ TPDRW  V   V  +T  +V  HY  L  ++  IE+G V
Sbjct: 9  RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKV 68

Query: 74 PLVNYEAKTNSDRPTSKNR 93
          P  NY   T  +  T + R
Sbjct: 69 PFPNYRT-TGGNMKTDEKR 86

[Close]

BLAST of Lcy09g001880 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-07
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 16  WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
           WT  +N AF+ AL +Y++ TPDRWH V   V  KT  +    Y  L  ++ +IE G VP 
Sbjct: 14  WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 76  VNYEAKTNSDRPTSKNRETPKEKEEHSSK 105
            +Y+  T +   +++ R   +EK   S K
Sbjct: 74  PDYKTTTGN---SNRGRLRDEEKRMRSMK 99

[Close]

BLAST of Lcy09g001880 vs. ExPASy TrEMBL
Match: A0A6A5NSE9 (Putative transcription factor MYB/SANT family OS=Lupinus albus OX=3870 GN=Lal_00024702 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.7e-13
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 15  EWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVP 74
           +WT +EN  F+ AL +Y+++TPDRWHK+ A +P KT+ DV+  Y EL  ++ NIEAG VP
Sbjct: 29  KWTASENKLFENALAVYDKETPDRWHKLAAMIPGKTVSDVMRQYKELEADVCNIEAGLVP 88

Query: 75  LVNYEAKTNSDRPTS 90
           +  Y++ TN+   T+
Sbjct: 89  VPGYDSATNTITTTT 103

[Close]

BLAST of Lcy09g001880 vs. ExPASy TrEMBL
Match: A0A3Q7FM99 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-12
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 2  STSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAEL 61
          S SN     + +REWT  EN  F++A+ +Y+EKTPDRW KV A +P K++ DVI+ Y EL
Sbjct: 9  SLSNSSWMNKNKREWTKEENKQFESAIAIYDEKTPDRWFKVAALIPGKSVIDVINQYKEL 68

Query: 62 HGELYNIEAGTVPLVNYEAKT 83
            ++Y+IEAG VP   Y A +
Sbjct: 69 VSDVYDIEAGLVPNPGYFASS 89

[Close]

BLAST of Lcy09g001880 vs. ExPASy TrEMBL
Match: A0A5N5LE90 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_013866 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 2  STSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAEL 61
          S+SN  P++ +  +WT  EN AF+ AL +Y+++TPDRW+KV A +P KT+ DVI  Y EL
Sbjct: 15 SSSNWLPEESKNTKWTPAENKAFENALAIYDKETPDRWYKVAAMIPGKTIGDVIKQYKEL 74

Query: 62 HGELYNIEAGTVPLVNYEA 81
            ++  IEAG +P+  Y +
Sbjct: 75 ELDVSYIEAGLIPVPGYSS 93

[Close]

BLAST of Lcy09g001880 vs. ExPASy TrEMBL
Match: A0A6N2L1M7 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS172978 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 2  STSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAEL 61
          S+SN  P++ +  +WT  EN AF+ AL +Y+++TPDRW+KV A +P KT+ DVI  Y EL
Sbjct: 15 SSSNWLPEESKNTKWTPAENKAFENALAIYDKETPDRWYKVAAMIPGKTIGDVIKQYKEL 74

Query: 62 HGELYNIEAGTVPLVNYEA 81
            ++  IEAG +P+  Y +
Sbjct: 75 EIDVSYIEAGLIPVPGYSS 93

[Close]

BLAST of Lcy09g001880 vs. ExPASy TrEMBL
Match: A0A5A7P647 (Duplicated homeodomain-like superfamily protein OS=Striga asiatica OX=4170 GN=STAS_03841 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0


Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WT  EN AF+ AL ++++ TPDRWHKV A VP KT+ DVI HY EL  ++ +IEAG VP+
Sbjct: 31 WTPAENKAFENALALFDDNTPDRWHKVAAMVPTKTVLDVIRHYKELEDDVTSIEAGLVPV 90

Query: 76 VNYEAKTNS 85
            Y    +S
Sbjct: 91 PGYSCHVSS 99

[Close]

BLAST of Lcy09g001880 vs. NCBI nr
Match: KAE9605999.1 (putative transcription factor MYB/SANT family [Lupinus albus] >KAF1889377.1 hypothetical protein Lal_00024702 [Lupinus albus])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 15  EWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVP 74
           +WT +EN  F+ AL +Y+++TPDRWHK+ A +P KT+ DV+  Y EL  ++ NIEAG VP
Sbjct: 29  KWTASENKLFENALAVYDKETPDRWHKLAAMIPGKTVSDVMRQYKELEADVCNIEAGLVP 88

Query: 75  LVNYEAKTNSDRPTS 90
           +  Y++ TN+   T+
Sbjct: 89  VPGYDSATNTITTTT 103

[Close]

BLAST of Lcy09g001880 vs. NCBI nr
Match: XP_031277790.1 (transcription factor DIVARICATA-like [Pistacia vera])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1  MSTSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAE 60
          +ST+N   +  +  +WT  EN  F+ AL +Y++ TPDRWHKV A +P KT+ DVI  Y E
Sbjct: 14 LSTNNWVLEDSKTTKWTAQENKIFENALAIYDKDTPDRWHKVAAMIPGKTVVDVIKQYKE 73

Query: 61 LHGELYNIEAGTVPLVNYEAKTNS 85
          L  ++ NIEAG +P+  Y   TNS
Sbjct: 74 LEADVSNIEAGLIPIPGYN-NTNS 96

[Close]

BLAST of Lcy09g001880 vs. NCBI nr
Match: XP_004235257.1 (transcription factor DIVARICATA [Solanum lycopersicum])

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-12
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 2  STSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAEL 61
          S SN     + +REWT  EN  F++A+ +Y+EKTPDRW KV A +P K++ DVI+ Y EL
Sbjct: 9  SLSNSSWMNKNKREWTKEENKQFESAIAIYDEKTPDRWFKVAALIPGKSVIDVINQYKEL 68

Query: 62 HGELYNIEAGTVPLVNYEAKT 83
            ++Y+IEAG VP   Y A +
Sbjct: 69 VSDVYDIEAGLVPNPGYFASS 89

[Close]

BLAST of Lcy09g001880 vs. NCBI nr
Match: KAB5540892.1 (hypothetical protein DKX38_013866 [Salix brachista])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 2  STSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAEL 61
          S+SN  P++ +  +WT  EN AF+ AL +Y+++TPDRW+KV A +P KT+ DVI  Y EL
Sbjct: 15 SSSNWLPEESKNTKWTPAENKAFENALAIYDKETPDRWYKVAAMIPGKTIGDVIKQYKEL 74

Query: 62 HGELYNIEAGTVPLVNYEA 81
            ++  IEAG +P+  Y +
Sbjct: 75 ELDVSYIEAGLIPVPGYSS 93

[Close]

BLAST of Lcy09g001880 vs. NCBI nr
Match: KAG5238313.1 (syringolide-induced protein [Salix suchowensis])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 2  STSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAEL 61
          S+SN  P++ +  +WT  EN AF+ AL +Y+++TPDRW+KV A +P KT+ DVI  Y EL
Sbjct: 15 SSSNWLPEESKNTKWTPAENKAFENALAIYDKETPDRWYKVAAMIPGKTIGDVIKQYKEL 74

Query: 62 HGELYNIEAGTVPLVNYEA 81
            ++  IEAG +P+  Y +
Sbjct: 75 ELDVSYIEAGLIPVPGYSS 93

[Close]

BLAST of Lcy09g001880 vs. TAIR 10
Match: AT5G05790.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-14
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 12 QRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAG 71
          Q   WT  EN  F+ AL +Y + TPDRW KV A +P KT+ DV+  Y++L  +L++IEAG
Sbjct: 27 QSSSWTKEENKKFERALAVYADDTPDRWFKVAAMIPGKTISDVMRQYSKLEEDLFDIEAG 86

Query: 72 TVPLVNYEAKT 83
           VP+  Y + T
Sbjct: 87 LVPIPGYRSVT 97

[Close]

BLAST of Lcy09g001880 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator )

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-14
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WT  EN AF+ AL +Y++ TPDRW KV A +P KT+ DVI  Y +L  ++ +IEAG +P+
Sbjct: 34 WTAAENKAFENALAVYDDNTPDRWQKVAAVIPGKTVSDVIRQYNDLEADVSSIEAGLIPV 93

Query: 76 VNY 79
            Y
Sbjct: 94 PGY 96

[Close]

BLAST of Lcy09g001880 vs. TAIR 10
Match: AT2G38090.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MSTSNRCPDKEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAE 60
          + TSN    + +  +WT  EN  F+ AL  Y++ TPDRW +V A +P KT+ DVI  Y E
Sbjct: 14 LETSNWLFQENRGTKWTAEENKKFENALAFYDKDTPDRWSRVAAMLPGKTVGDVIKQYRE 73

Query: 61 LHGELYNIEAGTVPLVNY 79
          L  ++ +IEAG +P+  Y
Sbjct: 74 LEEDVSDIEAGLIPIPGY 91

[Close]

BLAST of Lcy09g001880 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-13
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WTF++N  F+ AL +Y++ TPDRWH V   V  KT+ +V  HY  L  +L NIE G VPL
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 76 VNYEAKTNSDR 87
           NY+   ++ R
Sbjct: 72 PNYKTFESNSR 82

[Close]

BLAST of Lcy09g001880 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-13
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WTF++N  F+ AL +Y++ TPDRWH V   V  KT+ +V  HY  L  +L NIE G VPL
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 76 VNYEAKTNSDR 87
           NY+   ++ R
Sbjct: 72 PNYKTFESNSR 82

The following BLAST results are available for this feature:

BLAST of Lcy09g001880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	3.6e-12	46.48	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8S9H7	3.9e-11	44.78	Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ...	[more]
Q6NNN0	1.4e-08	40.58	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q58FS3	4.1e-08	39.24	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	3.4e-07	35.96	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]

BLAST of Lcy09g001880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5NSE9	9.7e-13	46.67	Putative transcription factor MYB/SANT family OS=Lupinus albus OX=3870 GN=Lal_00...	[more]
A0A3Q7FM99	1.3e-12	48.15	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
A0A5N5LE90	1.7e-12	45.57	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_013866 PE=4 SV=1	[more]
A0A6N2L1M7	1.7e-12	45.57	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS172978 PE=4 SV=...	[more]
A0A5A7P647	2.2e-12	52.17	Duplicated homeodomain-like superfamily protein OS=Striga asiatica OX=4170 GN=ST...	[more]

BLAST of Lcy09g001880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE9605999.1	2.0e-12	46.67	putative transcription factor MYB/SANT family [Lupinus albus] >KAF1889377.1 hypo...	[more]
XP_031277790.1	2.0e-12	46.43	transcription factor DIVARICATA-like [Pistacia vera]	[more]
XP_004235257.1	2.6e-12	48.15	transcription factor DIVARICATA [Solanum lycopersicum]	[more]
KAB5540892.1	3.4e-12	45.57	hypothetical protein DKX38_013866 [Salix brachista]	[more]
KAG5238313.1	3.4e-12	45.57	syringolide-induced protein [Salix suchowensis]	[more]

BLAST of Lcy09g001880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05790.1	3.9e-14	46.48	Duplicated homeodomain-like superfamily protein	[more]
AT5G58900.1	3.9e-14	49.21	Homeodomain-like transcriptional regulator	[more]
AT2G38090.1	1.5e-13	42.31	Duplicated homeodomain-like superfamily protein	[more]
AT1G75250.1	2.5e-13	46.48	RAD-like 6	[more]
AT1G75250.2	2.5e-13	46.48	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 1.3E-4 score: 31.4
None	No IPR available	GENE3D	1.10.10.60		coord: 8..75 e-value: 5.7E-16 score: 60.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..109
None	No IPR available	PANTHER	PTHR44042:SF6	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	coord: 11..107
IPR043363	Transcription factor DIVARICATA-like	PANTHER	PTHR44042	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 11..107
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g001880.1	Lcy09g001880.1	mRNA