Lcy09g001820 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g001820
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Syntaxin-81
Location	Chr09: 1482573 .. 1483396 (-)
RNA-Seq Expression	Lcy09g001820
Synteny	Lcy09g001820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGTTCAGGGATAGGACTGAAGATTTTAAAGATGTTGTGCGGCATTGTGCAGTTTCTTTAGGATATAACGAGGTTTGTATGCTTTTCTCAAAGTATATAGTTGCTTGTTGATGTTGAACTTGGACTATATATTTCTGGTGAAAGATTGGCTCGATTTCTTTATAGGAAATGATCAGACTACACCAAGTTCTAGCATTAGATACGTGTATTACAATAGTCTTGTCTTTTAAAACTTTTCTACGTGTTTTTCAAGTAGATCAAAGATGTTATTTTACCATTAGGAACCATGAGTGTAGTTTCTGTGCTGCACAGCTAGAAACTCTTGTTATCAATTACAAATGTTTTTGTGTTTCCTCGAAACATCCTTATGTTAATTTCAATTCTTTTGTAGTCCAAGTTGGCGGCTATTATGGCATCTTTCATTATTCAGAAACCTCGGCAAAGGTCACCTTTTCTTAAAGCTGCCCTGAAAACGGTAGAATTATCAATATAGTATTTGTACTTTTTTTTCCCTTTTCAGGAGAACTTAGTTGGAACATAAATTGAATTCTTTCGTTGGTTTGTTTCATGGATTACAATTTCCAAACGTGTGCAAAAATTTACTCAAATGCTCGTGACACTTAAAAATGTATATGCAGCTTACATGTTTGACTCCTTTACTTGTCTTAAATCAGCTTGAAAGCATTGGTGCTCTTGAAGAGTTTATGTTGAAACATCAAAAGGACTATGTAGATATGTATCGCACAACAGATCAAGAGAGAGACAATATTGAACATGAGGTGGGCTGTCCAACTACTTGGGAGATCACTAAGCTCTAG

mRNA sequence

ATGGCGAAGTTCAGGGATAGGACTGAAGATTTTAAAGATGTTGTGCGGCATTGTGCAGTTTCTTTAGGATATAACGAGCTTGAAAGCATTGGTGCTCTTGAAGAGTTTATGTTGAAACATCAAAAGGACTATGTAGATATGTATCGCACAACAGATCAAGAGAGAGACAATATTGAACATGAGGTGGGCTGTCCAACTACTTGGGAGATCACTAAGCTCTAG

Coding sequence (CDS)

ATGGCGAAGTTCAGGGATAGGACTGAAGATTTTAAAGATGTTGTGCGGCATTGTGCAGTTTCTTTAGGATATAACGAGCTTGAAAGCATTGGTGCTCTTGAAGAGTTTATGTTGAAACATCAAAAGGACTATGTAGATATGTATCGCACAACAGATCAAGAGAGAGACAATATTGAACATGAGGTGGGCTGTCCAACTACTTGGGAGATCACTAAGCTCTAG

Protein sequence

MAKFRDRTEDFKDVVRHCAVSLGYNELESIGALEEFMLKHQKDYVDMYRTTDQERDNIEHEVGCPTTWEITKL

Homology

[Close]

BLAST of Lcy09g001820 vs. ExPASy Swiss-Prot
Match: P59277 (Syntaxin-81 OS=Arabidopsis thaliana OX=3702 GN=SYP81 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-15
Identity = 45/90 (50.00%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          M++FRDRTEDFKD VR+ AVS+GYNE                            L+SI  
Sbjct: 1  MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LE FMLKH+KDYVD++RTT+QE+D+IE EV
Sbjct: 61 LELFMLKHRKDYVDLHRTTEQEKDSIEQEV 90

[Close]

BLAST of Lcy09g001820 vs. ExPASy TrEMBL
Match: A0A1S3B2Z0 (syntaxin-81 OS=Cucumis melo OX=3656 GN=LOC103485547 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          MAKFRDRTEDFKDVVRHCA+SLGYNE                            LESIGA
Sbjct: 1  MAKFRDRTEDFKDVVRHCAISLGYNESKLAAIMASFIIQKPRQRSPFIKAALKTLESIGA 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 90

[Close]

BLAST of Lcy09g001820 vs. ExPASy TrEMBL
Match: A0A5A7TE20 (Syntaxin-81 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001930 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          MAKFRDRTEDFKDVVRHCA+SLGYNE                            LESIGA
Sbjct: 1  MAKFRDRTEDFKDVVRHCAISLGYNESKLAAIMASFIIQKPRQRSPFIKAALKTLESIGA 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 90

[Close]

BLAST of Lcy09g001820 vs. ExPASy TrEMBL
Match: A0A0A0KDA4 (Syntaxin-18_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G009450 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          MAKFRDRTEDFKDVVRHCA+SLGYNE                            LESIGA
Sbjct: 1  MAKFRDRTEDFKDVVRHCAISLGYNESKLAAIMASFIIQKPRQRSPFIKAALKTLESIGA 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 90

[Close]

BLAST of Lcy09g001820 vs. ExPASy TrEMBL
Match: A0A6J1BZU2 (syntaxin-81 OS=Momordica charantia OX=3673 GN=LOC111006207 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.0e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          MAKF+DRTEDFKDVVRHCAVSLGYNE                            LESIGA
Sbjct: 1  MAKFKDRTEDFKDVVRHCAVSLGYNESKLAAIMASFIIQKPRQRSPFVKAALKTLESIGA 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 90

[Close]

BLAST of Lcy09g001820 vs. ExPASy TrEMBL
Match: A0A6J1K136 (syntaxin-81-like OS=Cucurbita maxima OX=3661 GN=LOC111489194 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 60/90 (66.67%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          MAKFRDRTEDFKDVVRHCA+SL YNE                            LESIGA
Sbjct: 1  MAKFRDRTEDFKDVVRHCAISLEYNESKLAAILASFIIQKPRQRSPFIKAALKTLESIGA 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 90

[Close]

BLAST of Lcy09g001820 vs. NCBI nr
Match: XP_011656400.1 (syntaxin-81 isoform X2 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          MAKFRDRTEDFKDVVRHCA+SLGYNE                            LESIGA
Sbjct: 1  MAKFRDRTEDFKDVVRHCAISLGYNESKLAAIMASFIIQKPRQRSPFIKAALKTLESIGA 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 90

[Close]

BLAST of Lcy09g001820 vs. NCBI nr
Match: XP_008441427.1 (PREDICTED: syntaxin-81 [Cucumis melo] >XP_008441428.1 PREDICTED: syntaxin-81 [Cucumis melo] >KAA0041530.1 syntaxin-81 [Cucumis melo var. makuwa] >TYK24404.1 syntaxin-81 [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          MAKFRDRTEDFKDVVRHCA+SLGYNE                            LESIGA
Sbjct: 1  MAKFRDRTEDFKDVVRHCAISLGYNESKLAAIMASFIIQKPRQRSPFIKAALKTLESIGA 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 90

[Close]

BLAST of Lcy09g001820 vs. NCBI nr
Match: XP_004138436.2 (syntaxin-81 isoform X1 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1   MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
           MAKFRDRTEDFKDVVRHCA+SLGYNE                            LESIGA
Sbjct: 38  MAKFRDRTEDFKDVVRHCAISLGYNESKLAAIMASFIIQKPRQRSPFIKAALKTLESIGA 97

Query: 61  LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
           LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 98  LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 127

[Close]

BLAST of Lcy09g001820 vs. NCBI nr
Match: XP_022133683.1 (syntaxin-81 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 4.2e-22
Identity = 61/90 (67.78%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          MAKF+DRTEDFKDVVRHCAVSLGYNE                            LESIGA
Sbjct: 1  MAKFKDRTEDFKDVVRHCAVSLGYNESKLAAIMASFIIQKPRQRSPFVKAALKTLESIGA 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 90

[Close]

BLAST of Lcy09g001820 vs. NCBI nr
Match: KAG6578437.1 (putative sugar phosphate/phosphate translocator, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 60/90 (66.67%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 1   MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
           MAKFRDRTEDFKDVVRHCA+SL YNE                            LESIGA
Sbjct: 224 MAKFRDRTEDFKDVVRHCAISLEYNESKLAAIMTSFIIQKPRQRSPFIKAALKTLESIGA 283

Query: 61  LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
           LEEFMLKHQKDYVDMYRTTDQERDNIEHEV
Sbjct: 284 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 313

[Close]

BLAST of Lcy09g001820 vs. TAIR 10
Match: AT1G51740.1 (syntaxin of plants 81 )

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-16
Identity = 45/90 (50.00%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 1  MAKFRDRTEDFKDVVRHCAVSLGYNE----------------------------LESIGA 60
          M++FRDRTEDFKD VR+ AVS+GYNE                            L+SI  
Sbjct: 1  MSRFRDRTEDFKDSVRNSAVSIGYNESKVASTMASFIIHKPKERSPFTKAAFKTLDSIKE 60

Query: 61 LEEFMLKHQKDYVDMYRTTDQERDNIEHEV 63
          LE FMLKH+KDYVD++RTT+QE+D+IE EV
Sbjct: 61 LELFMLKHRKDYVDLHRTTEQEKDSIEQEV 90

The following BLAST results are available for this feature:

BLAST of Lcy09g001820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P59277	3.0e-15	50.00	Syntaxin-81 OS=Arabidopsis thaliana OX=3702 GN=SYP81 PE=1 SV=2	[more]

BLAST of Lcy09g001820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B2Z0	1.2e-22	67.78	syntaxin-81 OS=Cucumis melo OX=3656 GN=LOC103485547 PE=3 SV=1	[more]
A0A5A7TE20	1.2e-22	67.78	Syntaxin-81 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001930 P...	[more]
A0A0A0KDA4	1.2e-22	67.78	Syntaxin-18_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0094...	[more]
A0A6J1BZU2	2.0e-22	67.78	syntaxin-81 OS=Momordica charantia OX=3673 GN=LOC111006207 PE=3 SV=1	[more]
A0A6J1K136	1.0e-21	66.67	syntaxin-81-like OS=Cucurbita maxima OX=3661 GN=LOC111489194 PE=3 SV=1	[more]

BLAST of Lcy09g001820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656400.1	2.4e-22	67.78	syntaxin-81 isoform X2 [Cucumis sativus]	[more]
XP_008441427.1	2.4e-22	67.78	PREDICTED: syntaxin-81 [Cucumis melo] >XP_008441428.1 PREDICTED: syntaxin-81 [Cu...	[more]
XP_004138436.2	2.4e-22	67.78	syntaxin-81 isoform X1 [Cucumis sativus]	[more]
XP_022133683.1	4.2e-22	67.78	syntaxin-81 [Momordica charantia]	[more]
KAG6578437.1	2.1e-21	66.67	putative sugar phosphate/phosphate translocator, partial [Cucurbita argyrosperma...	[more]

BLAST of Lcy09g001820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51740.1	2.1e-16	50.00	syntaxin of plants 81	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15959	SYNTAXIN-18	coord: 5..62
None	No IPR available	PANTHER	PTHR15959:SF0	SYNTAXIN-18	coord: 5..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g001820.1	Lcy09g001820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031201	SNARE complex