Lcy09g001020 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g001020
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protamine-2 like
Location	Chr09: 977254 .. 978543 (+)
RNA-Seq Expression	Lcy09g001020
Synteny	Lcy09g001020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCGTCAGCTCCTTGCACATCGAAGTGGTCCAAAATTACCTATAACACAAAAAAATAATTACAAGTAAATTCATTAATTAGTTTTGATAATAATTTTCTCCCAAAAGAAAACTTTGATAATGATAATTAGCATGTTTTTATTTTATTGACAACTTTTTATTTACCTAATCAATTGTTGGCTTAAATATGAAAAAGAAAAAAAAATCATATTTTTAGAGTATTAATGTATATTTTCAAATATAATAAAATTTTTAATTTTTAAAAAATTAATATAATCAAAACCTTATAATATTTTAATTGAGACATCAAAATTACATTTTAAAGTGCATCGATTTCTTAAAGAGTTTTTGTTTTTTGTTTTTTTCAGTTCCGAGTAGTTATCTTGTAACGTGATGTATTTATACAAAAATAAATTTATCCACTTGTCTCGAGCCAAAACCAAGGGTAGCGCAAATAAATAGATTTTCTCAGAGTGGGTCCTCTGCAAAAATCCGCACGCAGTTTCAGATTCACAATCACGATGAGCCATGAAGAGGATCCTCCATTTAGGGCTTTTTACGAGCTCTGCTCCATGATAATCGACGTCCTCAAAATTCCTCCATTACCAATCCCCATCCTCCGATCTTCCTCCTCGACACTGCCTCCGAATTCCTCTCCGGCGGTCTTCGCCTCGCTCTTCATCGGAATTTCTCTCGCTTTGATTCTCTTCGGAACGATTACGCTCCTCATTGGATTCGTGTTGATGCCTGTTGTTACGCTCTTGCTCCTTCTCTTCTACTTCTTCAACGTCCTTTCGATTTTGTCCAATTTTGCCCGTTCCATGCTCTGCGCCTGCACCGTCTCCTCGCTAAAAGATGTTTCCGCCGGTGAATTTCTCTGTTTCTTCGTTAATTTTGGGCTCTGTAATTGTGTTGTTCGGTTACTGAGATTCGATTGCTAAATCCTAATTTGTGTGCAGTTTGGGAATCTTCGTGCTGCTGCGGCTGCTGAATTCCGCCGCCGCTGCCAACTTAGGGTTGTTGAAGATTCTGAAGGTCGTTTCATTACCATTACTTATTTAGCCTTTTGGAATTTGATGAAGTTCAGGTAGAATTGTAGGAGTTTTCCTTTTTGTATGCTATATTTTATACATTAGGGTTTGCTTCCACTTCCACTGCATAGTTTAAGTTTACTCTTTTCTTTTTTTCCTTTTATTTTTCACAGTGGAACAGAGAATACAGAGTGCATTATTTATTTATATTATTTTTTTAAGTTCAATAATTACGGGACGAGATCGACATAAAAATCGG

mRNA sequence

TCTCGTCAGCTCCTTGCACATCGAAGTGGTCCAAAATTACCTATAACACAAAAAAATAATTACAAGTAAATTCATTAATTAGTTTTGATAATAATTTTCTCCCAAAAGAAAACTTTGATAATGATAATTAGCATGTTTTTATTTTATTGACAACTTTTTATTTACCTAATCAATTGTTGGCTTAAATATGAAAAAGAAAAAAAAATCATATTTTTAGAGTATTAATGTATATTTTCAAATATAATAAAATTTTTAATTTTTAAAAAATTAATATAATCAAAACCTTATAATATTTTAATTGAGACATCAAAATTACATTTTAAAGTGCATCGATTTCTTAAAGAGTTTTTGTTTTTTGTTTTTTTCAGTTCCGAGTAGTTATCTTGTAACGTGATGTATTTATACAAAAATAAATTTATCCACTTGTCTCGAGCCAAAACCAAGGGTAGCGCAAATAAATAGATTTTCTCAGAGTGGGTCCTCTGCAAAAATCCGCACGCAGTTTCAGATTCACAATCACGATGAGCCATGAAGAGGATCCTCCATTTAGGGCTTTTTACGAGCTCTGCTCCATGATAATCGACGTCCTCAAAATTCCTCCATTACCAATCCCCATCCTCCGATCTTCCTCCTCGACACTGCCTCCGAATTCCTCTCCGGCGGTCTTCGCCTCGCTCTTCATCGGAATTTCTCTCGCTTTGATTCTCTTCGGAACGATTACGCTCCTCATTGGATTCGTGTTGATGCCTGTTGTTACGCTCTTGCTCCTTCTCTTCTACTTCTTCAACGTCCTTTCGATTTTGTCCAATTTTGCCCGTTCCATGCTCTGCGCCTGCACCGTCTCCTCGCTAAAAGATGTTTCCGCCGTTTGGGAATCTTCGTGCTGCTGCGGCTGCTGAATTCCGCCGCCGCTGCCAACTTAGGGTTGTTGAAGATTCTGAAGGTCGTTTCATTACCATTACTTATTTAGCCTTTTGGAATTTGATGAAGTTCAGGTAGAATTGTAGGAGTTTTCCTTTTTGTATGCTATATTTTATACATTAGGGTTTGCTTCCACTTCCACTGCATAGTTTAAGTTTACTCTTTTCTTTTTTTCCTTTTATTTTTCACAGTGGAACAGAGAATACAGAGTGCATTATTTATTTATATTATTTTTTTAAGTTCAATAATTACGGGACGAGATCGACATAAAAATCGG

Coding sequence (CDS)

ATGAGCCATGAAGAGGATCCTCCATTTAGGGCTTTTTACGAGCTCTGCTCCATGATAATCGACGTCCTCAAAATTCCTCCATTACCAATCCCCATCCTCCGATCTTCCTCCTCGACACTGCCTCCGAATTCCTCTCCGGCGGTCTTCGCCTCGCTCTTCATCGGAATTTCTCTCGCTTTGATTCTCTTCGGAACGATTACGCTCCTCATTGGATTCGTGTTGATGCCTGTTGTTACGCTCTTGCTCCTTCTCTTCTACTTCTTCAACGTCCTTTCGATTTTGTCCAATTTTGCCCGTTCCATGCTCTGCGCCTGCACCGTCTCCTCGCTAAAAGATGTTTCCGCCGTTTGGGAATCTTCGTGCTGCTGCGGCTGCTGA

Protein sequence

MSHEEDPPFRAFYELCSMIIDVLKIPPLPIPILRSSSSTLPPNSSPAVFASLFIGISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLCACTVSSLKDVSAVWESSCCCGC

Homology

[Close]

BLAST of Lcy09g001020 vs. ExPASy TrEMBL
Match: A0A6J1BX03 (uncharacterized protein LOC111006451 OS=Momordica charantia OX=3673 GN=LOC111006451 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 77/125 (61.60%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 10  RAFYELCSMIIDVLKIPPLPIPILRSSSS-----------TLPPNSSPAVFASLFIGISL 69
           RA Y+L SMI+DVL+IPP PIPIL SS +            L  ++SPAVFASLFI IS+
Sbjct: 15  RASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISM 74

Query: 70  ALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLCACTVSSLKDVSAVWE 124
           ALILFGTI L+IGF+L+P++  +LLLFYFFNV+SILSNFARS+LC       K VSAVWE
Sbjct: 75  ALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYP----KHVSAVWE 134

[Close]

BLAST of Lcy09g001020 vs. ExPASy TrEMBL
Match: A0A2I4HAE7 (uncharacterized protein LOC109015095 OS=Juglans regia OX=51240 GN=LOC109015095 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.3e-16
Identity = 62/122 (50.82%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 4   EEDPPFRAFYELCSMIIDVLKIPP--LPIPILRS------SSSTLPPNSSPAVFASLFIG 63
           ++DP  R FYELCSMII +L  PP  LP+P LRS      SSS   P SSPA F SLF+G
Sbjct: 3   DQDPESRVFYELCSMIIHLLTSPPLVLPLPTLRSGGQLEASSSRQAPTSSPAAFGSLFLG 62

Query: 64  ISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLCACTVSSLKDVSA 118
           IS+ L+LFG++T  IGF+LMP+V  L+ LFYF  ++  LS   RS+LC    S   D   
Sbjct: 63  ISVTLMLFGSVTFFIGFILMPLVFGLVFLFYFAGIVYNLSELGRSILCP-AASDKNDYVP 122

[Close]

BLAST of Lcy09g001020 vs. ExPASy TrEMBL
Match: A0A5N6QUQ1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007215 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-15
Identity = 55/103 (53.40%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 4   EEDPPFRAFYELCSMIIDVLKIPPLPIPILRSSSSTLPPNS---SPAVFASLFIGISLAL 63
           ++DP     YELCSMI+ +L+ PPLP P    + + + P+S   SPA F SLF+GIS+AL
Sbjct: 3   DQDPQSSVLYELCSMIVHILRTPPLPFPF--PTLTNVGPSSKTTSPAAFGSLFVGISVAL 62

Query: 64  ILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLC 104
           +LFG++T  IGF+LMP+V  L+LLFYF   +SILS F RS+LC
Sbjct: 63  MLFGSLTFFIGFILMPLVIGLVLLFYFAGFVSILSEFGRSILC 103

[Close]

BLAST of Lcy09g001020 vs. ExPASy TrEMBL
Match: W9SAM7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010788 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 64/120 (53.33%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 4   EEDPPFRAFYELCSMIIDVLKIPPLPIPI-LRSSSSTL-------PPNSSPAVFASLFIG 63
           +ED   R F+EL SMII +LK+PPLPIP  +R+SSS+        P  +SP  FASLF+G
Sbjct: 3   DEDQQSRVFHELSSMIIHILKLPPLPIPFTIRTSSSSASASTSRQPAAASPTAFASLFLG 62

Query: 64  ISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLCACTVSSLKDVSA 116
           ISLAL+LFG++T  IGFVLMP+V  L+LLFY   +L  LS   RS+L     SS + VSA
Sbjct: 63  ISLALMLFGSVTFAIGFVLMPLVMGLVLLFYALEILFNLSELGRSIL--FPASSPRHVSA 120

[Close]

BLAST of Lcy09g001020 vs. ExPASy TrEMBL
Match: A0A6I9UFL0 (uncharacterized protein LOC105177442 OS=Sesamum indicum OX=4182 GN=LOC105177442 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 4   EEDPPFRAFYELCSMIIDVLKIPPLPI--PILR------SSSSTLPPNSSPAVFASLFIG 63
           E+D   R  YELCSMII +L+ PPLPI  P L       SSSS+ P   SPA F SLFIG
Sbjct: 61  EQDRQTRVLYELCSMIIHILRSPPLPISFPSLSLLSSPPSSSSSPPAQISPAAFGSLFIG 120

Query: 64  ISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSML 103
           IS+AL+LFG++T +IG +LMP+V  L+LLFYF  ++S LS   R +L
Sbjct: 121 ISIALMLFGSVTFVIGLILMPLVITLVLLFYFVGIVSNLSEIGRDIL 167

[Close]

BLAST of Lcy09g001020 vs. NCBI nr
Match: XP_022134096.1 (uncharacterized protein LOC111006451 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-24
Identity = 77/125 (61.60%), Postives = 92/125 (73.60%), Query Frame = 0


Query: 10  RAFYELCSMIIDVLKIPPLPIPILRSSSS-----------TLPPNSSPAVFASLFIGISL 69
           RA Y+L SMI+DVL+IPP PIPIL SS +            L  ++SPAVFASLFI IS+
Sbjct: 15  RASYQLSSMIVDVLRIPPFPIPILASSLTAGSFPSKHSLLALTSSASPAVFASLFIAISM 74

Query: 70  ALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLCACTVSSLKDVSAVWE 124
           ALILFGTI L+IGF+L+P++  +LLLFYFFNV+SILSNFARS+LC       K VSAVWE
Sbjct: 75  ALILFGTIALMIGFLLVPLLITVLLLFYFFNVVSILSNFARSLLCPYP----KHVSAVWE 134

[Close]

BLAST of Lcy09g001020 vs. NCBI nr
Match: KAG8384982.1 (hypothetical protein BUALT_Bualt04G0174800 [Buddleja alternifolia])

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-16
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 4   EEDPPFRAFYELCSMIIDVLKIPPLPI--PILRS--SSSTLPPNS-SPAVFASLFIGISL 63
           EED   R  YELCSMII + + PPLPI  P L S  SSS+ PP+  SPA F SLFIGIS+
Sbjct: 3   EEDEQTRVLYELCSMIIHIFRSPPLPISFPTLSSQPSSSSSPPSQISPAAFGSLFIGISV 62

Query: 64  ALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSML 103
           AL+LFG++T LIGF+LMP+V +L++LFYF  ++S LS   RS+L
Sbjct: 63  ALMLFGSVTFLIGFILMPLVIMLVMLFYFVGIVSNLSEIGRSIL 106

[Close]

BLAST of Lcy09g001020 vs. NCBI nr
Match: XP_018853121.1 (uncharacterized protein LOC109015095 [Juglans regia] >KAF5479837.1 hypothetical protein F2P56_000626 [Juglans regia])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 62/122 (50.82%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 4   EEDPPFRAFYELCSMIIDVLKIPP--LPIPILRS------SSSTLPPNSSPAVFASLFIG 63
           ++DP  R FYELCSMII +L  PP  LP+P LRS      SSS   P SSPA F SLF+G
Sbjct: 3   DQDPESRVFYELCSMIIHLLTSPPLVLPLPTLRSGGQLEASSSRQAPTSSPAAFGSLFLG 62

Query: 64  ISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLCACTVSSLKDVSA 118
           IS+ L+LFG++T  IGF+LMP+V  L+ LFYF  ++  LS   RS+LC    S   D   
Sbjct: 63  ISVTLMLFGSVTFFIGFILMPLVFGLVFLFYFAGIVYNLSELGRSILCP-AASDKNDYVP 122

[Close]

BLAST of Lcy09g001020 vs. NCBI nr
Match: KAF5479836.1 (hypothetical protein F2P56_000625 [Juglans regia])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-15
Identity = 59/108 (54.63%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 4   EEDPPFRAFYELCSMIIDVLKIPP--LPIPILRS------SSSTLPPNSSPAVFASLFIG 63
           ++DP  R FYELCSMII +L  PP  LP+P LRS      SSS   P SSPA F SLF+G
Sbjct: 3   DQDPESRVFYELCSMIIHLLTSPPLVLPLPTLRSGGQLEASSSRQAPTSSPAAFGSLFLG 62

Query: 64  ISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLC 104
           IS+ L+LFG++T  IGF+LMP+V  L+ LFYF  ++  LS   RS+LC
Sbjct: 63  ISVTLMLFGSVTFFIGFILMPLVFGLVFLFYFAGIVYNLSELGRSILC 110

[Close]

BLAST of Lcy09g001020 vs. NCBI nr
Match: XP_041006396.1 (uncharacterized protein LOC121251131 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 62/122 (50.82%), Postives = 77/122 (63.11%), Query Frame = 0


Query: 4   EEDPPFRAFYELCSMIIDVLKIPP--LPIPILRS------SSSTLPPNSSPAVFASLFIG 63
           ++DP    FYELCSMII +L  PP  LP+P LRS      SSS   P SSP  F SLF+G
Sbjct: 3   DQDPQSMVFYELCSMIIHLLTSPPLALPLPTLRSGGQLEASSSRQAPTSSPVAFGSLFLG 62

Query: 64  ISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLCACTVSSLKDVSA 118
           IS+AL+LFG++T LIGF+LMP+V  L+ LFYF  ++  LS   RS+LC    S   D   
Sbjct: 63  ISVALMLFGSVTFLIGFILMPLVFGLVFLFYFAGIVYNLSELGRSILCP-AASDKNDYVP 122

[Close]

BLAST of Lcy09g001020 vs. TAIR 10
Match: AT1G27290.1 (unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 10  RAFYELCSMIIDVLKIPPLPIPI----------LR--------SSSSTLPPNSSPAVFAS 69
           R FY+L S+++++L+ PP+PI +          +R        SSSS    + SP+ FAS
Sbjct: 12  RVFYDLSSLVLNLLRSPPMPISLPDHFPDPPARIRPPFSSHRFSSSSPSLAHISPSGFAS 71

Query: 70  LFIGISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLC 104
           L +GIS+AL+L G++T  IGF+LMP V  L+L+FY   ++S +S   RS+LC
Sbjct: 72  LLLGISVALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGRSILC 123

[Close]

BLAST of Lcy09g001020 vs. TAIR 10
Match: AT1G27290.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-10
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 10  RAFYELCSMIIDVLKIPPLPIPI----------LR--------SSSSTLPPNSSPAVFAS 69
           R FY+L S+++++L+ PP+PI +          +R        SSSS    + SP+ FAS
Sbjct: 12  RVFYDLSSLVLNLLRSPPMPISLPDHFPDPPARIRPPFSSHRFSSSSPSLAHISPSGFAS 71

Query: 70  LFIGISLALILFGTITLLIGFVLMPVVTLLLLLFYFFNVLSILSNFARSMLC 104
           L +GIS+AL+L G++T  IGF+LMP V  L+L+FY   ++S +S   RS+LC
Sbjct: 72  LLLGISVALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGRSILC 123

The following BLAST results are available for this feature:

BLAST of Lcy09g001020 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g001020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BX03	2.2e-24	61.60	uncharacterized protein LOC111006451 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A2I4HAE7	6.3e-16	50.82	uncharacterized protein LOC109015095 OS=Juglans regia OX=51240 GN=LOC109015095 P...	[more]
A0A5N6QUQ1	2.4e-15	53.40	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007215 PE=4 SV=1	[more]
W9SAM7	1.6e-14	53.33	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010788 PE=4 SV=1	[more]
A0A6I9UFL0	2.0e-14	54.21	uncharacterized protein LOC105177442 OS=Sesamum indicum OX=4182 GN=LOC105177442 ...	[more]

BLAST of Lcy09g001020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134096.1	4.5e-24	61.60	uncharacterized protein LOC111006451 [Momordica charantia]	[more]
KAG8384982.1	3.4e-16	58.65	hypothetical protein BUALT_Bualt04G0174800 [Buddleja alternifolia]	[more]
XP_018853121.1	1.3e-15	50.82	uncharacterized protein LOC109015095 [Juglans regia] >KAF5479837.1 hypothetical ...	[more]
KAF5479836.1	1.7e-15	54.63	hypothetical protein F2P56_000625 [Juglans regia]	[more]
XP_041006396.1	2.2e-15	50.82	uncharacterized protein LOC121251131 [Juglans microcarpa x Juglans regia]	[more]

BLAST of Lcy09g001020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27290.1	1.0e-10	41.07	unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bac...	[more]
AT1G27290.2	1.0e-10	41.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34781	TRANSMEMBRANE PROTEIN	coord: 3..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g001020.1	Lcy09g001020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane