Lcy09g000920 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g000920
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCRM domain-containing protein
LocationChr09: 910328 .. 910975 (-)
RNA-Seq ExpressionLcy09g000920
SyntenyLcy09g000920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCGCGGTCGCGGTCTATCGAGCGCCATTACAAGGTACTCTCTCTATCCCTCTGGAAATCTCATGGTTTCATTCAATAGTTTCGAAATCAAACACATATTCATTTTCATTTTTATCGACTTAGCCTTAGCCAACTGCGTTCACAAATCCTGCTTATTGAAATATATCAATCCATCTCGTGACAGATGATATATGCTTGTTGAAAGGTGGAGTACTCAATGTTTAGCATTATAAATACAAGATCGTTCACATTTTCCCATTGGAGGCATATGAAATTGGATGGTTGTGGTGTGATGTTTATGCAGGGATACATTGTTTGGAGTCATTTCTCTGATCAGAAATGTGTCATATTTATCTTTATTGAACATACCCACGTCATTTGAGCAGTCCTCATATGGAAGTTGTGAGCATCAAAGAAGTAATCATATTGCAAGGTCTCCCCAGGAATCAACATCTGTACACTCTCCACATGCCTTCTTTTTCACTAGGAGGAGATATAATGGGTGTGAGTACCTTGGTGGGTTTAAAAACTGGCAATCTGTTTTTGTTAGGCATTTTAGCAATGCAGCTGTGGAGCTGAAGACAGACAGCAATGTTGTCAGGTTTTCTTTTGGTGTATTGAACAAAGAGAAGTATTTCATTTAA

mRNA sequence

ATGGCTCGCGGTCGCGGTCTATCGAGCGCCATTACAAGGGATACATTGTTTGGAGTCATTTCTCTGATCAGAAATGTGTCATATTTATCTTTATTGAACATACCCACGTCATTTGAGCAGTCCTCATATGGAAGTTGTGAGCATCAAAGAAGTAATCATATTGCAAGGTCTCCCCAGGAATCAACATCTGTACACTCTCCACATGCCTTCTTTTTCACTAGGAGGAGATATAATGGGTGTGAGTACCTTGGTGGGTTTAAAAACTGGCAATCTGTTTTTGTTAGGCATTTTAGCAATGCAGCTGTGGAGCTGAAGACAGACAGCAATGTTGTCAGGTTTTCTTTTGGTGTATTGAACAAAGAGAAGTATTTCATTTAA

Coding sequence (CDS)

ATGGCTCGCGGTCGCGGTCTATCGAGCGCCATTACAAGGGATACATTGTTTGGAGTCATTTCTCTGATCAGAAATGTGTCATATTTATCTTTATTGAACATACCCACGTCATTTGAGCAGTCCTCATATGGAAGTTGTGAGCATCAAAGAAGTAATCATATTGCAAGGTCTCCCCAGGAATCAACATCTGTACACTCTCCACATGCCTTCTTTTTCACTAGGAGGAGATATAATGGGTGTGAGTACCTTGGTGGGTTTAAAAACTGGCAATCTGTTTTTGTTAGGCATTTTAGCAATGCAGCTGTGGAGCTGAAGACAGACAGCAATGTTGTCAGGTTTTCTTTTGGTGTATTGAACAAAGAGAAGTATTTCATTTAA

Protein sequence

MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFGVLNKEKYFI
Homology
[Close]
BLAST of Lcy09g000920 vs. ExPASy TrEMBL
Match: A0A6J1HVJ0 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467053 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.3e-34
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIPTSF QSSY SCEHQ SN I++S QE
Sbjct: 1   MSRGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           STS+  P  FFFT +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+VRFSFG
Sbjct: 61  STSIRYPPGFFFT-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIVRFSFG 113

[Close]
BLAST of Lcy09g000920 vs. ExPASy TrEMBL
Match: A0A6J1CKB1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012231 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.4e-33
Identity = 80/116 (68.97%), Postives = 89/116 (76.72%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M RGR LS+A+TR++L G ISLIRNVS  SL NIP SF QS YGSCEHQRSNHI    QE
Sbjct: 1   MPRGRNLSNAVTRNSLVGFISLIRNVSRRSLSNIPASFGQSKYGSCEHQRSNHIVTPLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           STS+H P  F F+ RRYN  E+LGGFK WQS   RHF + AVELKTDSN+VRFSFG
Sbjct: 61  STSIHFPPGFLFS-RRYNVPEFLGGFKKWQS--FRHFRSVAVELKTDSNIVRFSFG 113

[Close]
BLAST of Lcy09g000920 vs. ExPASy TrEMBL
Match: A0A6J1HK68 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463795 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           STS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+VRFSFG
Sbjct: 61  STSIRYPPGFFFA-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIVRFSFG 113

[Close]
BLAST of Lcy09g000920 vs. ExPASy TrEMBL
Match: A0A0A0K5Y2 (CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062730 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 8.8e-26
Identity = 77/117 (65.81%), Postives = 85/117 (72.65%), Query Frame = 0 

Query: 1   MARGRGLS-SAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQ 60
           M R RGLS  A +R +LFG I LIRNVS LSLL+IPTSFEQSS+GS EHQ S+ I +S  
Sbjct: 1   MPRCRGLSIIAFSRGSLFGFIPLIRNVSPLSLLSIPTSFEQSSHGSWEHQASSCIVKSLN 60

Query: 61  ESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           ES S   P  F FT RRY+  E  GGFK WQS  VRHFSNA VELKTD+N VRFSFG
Sbjct: 61  ESMSRDCPPGFSFT-RRYSMRESSGGFKRWQS--VRHFSNAVVELKTDNNTVRFSFG 114

[Close]
BLAST of Lcy09g000920 vs. ExPASy TrEMBL
Match: A0A1S3C151 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495436 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.8e-24
Identity = 73/117 (62.39%), Postives = 81/117 (69.23%), Query Frame = 0 

Query: 1   MARGRGLS-SAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQ 60
           M R RG S   I+R +LFG  SLIRN S LSLL++PTSF QSS+GSCEHQ S+ I +S  
Sbjct: 1   MPRCRGQSIITISRGSLFGFTSLIRNASPLSLLSVPTSFGQSSHGSCEHQASSRIVKSLN 60

Query: 61  ESTSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           ESTS   P     T  RY+  E  GGFK WQS  VRHFSNA VELKTDSN VRFSFG
Sbjct: 61  ESTSRDCPPGSSLT-WRYSMWESYGGFKRWQS--VRHFSNAVVELKTDSNTVRFSFG 114

[Close]
BLAST of Lcy09g000920 vs. NCBI nr
Match: XP_022967603.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 4.8e-34
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIPTSF QSSY SCEHQ SN I++S QE
Sbjct: 1   MSRGHALSIAISRDSLYGFISLIRNVSRLSLFNIPTSFGQSSYESCEHQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           STS+  P  FFFT +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+VRFSFG
Sbjct: 61  STSIRYPPGFFFT-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIVRFSFG 113

[Close]
BLAST of Lcy09g000920 vs. NCBI nr
Match: XP_022141994.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 9.0e-33
Identity = 80/116 (68.97%), Postives = 89/116 (76.72%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M RGR LS+A+TR++L G ISLIRNVS  SL NIP SF QS YGSCEHQRSNHI    QE
Sbjct: 1   MPRGRNLSNAVTRNSLVGFISLIRNVSRRSLSNIPASFGQSKYGSCEHQRSNHIVTPLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           STS+H P  F F+ RRYN  E+LGGFK WQS   RHF + AVELKTDSN+VRFSFG
Sbjct: 61  STSIHFPPGFLFS-RRYNVPEFLGGFKKWQS--FRHFRSVAVELKTDSNIVRFSFG 113

[Close]
BLAST of Lcy09g000920 vs. NCBI nr
Match: KAG7011409.1 (putative CRM domain-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           STS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+VRFSFG
Sbjct: 61  STSIRYPPGFFFA-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIVRFSFG 113

[Close]
BLAST of Lcy09g000920 vs. NCBI nr
Match: KAG6571683.1 (putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           STS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+VRFSFG
Sbjct: 61  STSIRYPPGFFFA-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIVRFSFG 113

[Close]
BLAST of Lcy09g000920 vs. NCBI nr
Match: XP_022963469.1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita moschata])

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-32
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0 

Query: 1   MARGRGLSSAITRDTLFGVISLIRNVSYLSLLNIPTSFEQSSYGSCEHQRSNHIARSPQE 60
           M+RG  LS AI+RD+L+G ISLIRNVS LSL NIP+SF QSSY SCE+Q SN I++S QE
Sbjct: 1   MSRGHSLSIAISRDSLYGFISLIRNVSRLSLFNIPSSFGQSSYRSCEYQISNCISKSLQE 60

Query: 61  STSVHSPHAFFFTRRRYNGCEYLGGFKNWQSVFVRHFSNAAVELKTDSNVVRFSFG 117
           STS+  P  FFF  +RY+ CE LGGF+ WQS  VRHFSN AVELKTDSN+VRFSFG
Sbjct: 61  STSIRYPPGFFFA-KRYSMCESLGGFEKWQS--VRHFSNGAVELKTDSNIVRFSFG 113

The following BLAST results are available for this feature:
BLAST of Lcy09g000920 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g000920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVJ02.3e-3471.55uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb... [more]
A0A6J1CKB14.4e-3368.97uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Momord... [more]
A0A6J1HK681.3e-3268.97uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb... [more]
A0A0A0K5Y28.8e-2665.81CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G062730 PE=4 SV... [more]
A0A1S3C1514.8e-2462.39uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucumi... [more]
BLAST of Lcy09g000920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022967603.14.8e-3471.55uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit... [more]
XP_022141994.19.0e-3368.97uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Momordic... [more]
KAG7011409.12.6e-3268.97putative CRM domain-containing protein, chloroplastic [Cucurbita argyrosperma su... [more]
KAG6571683.12.6e-3268.97putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyro... [more]
XP_022963469.12.6e-3268.97uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbit... [more]
BLAST of Lcy09g000920 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g000920.1Lcy09g000920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding