Lcy09g000890 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy09g000890
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Fibroin heavy chain
Location	Chr09: 884846 .. 885576 (-)
RNA-Seq Expression	Lcy09g000890
Synteny	Lcy09g000890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATCAAACCAACAACATCTCTCTTTTTCATCTTCCCTCGTTCGTTCGTTCTATCTCACTATGAAATCAGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCGGAAACAACTTCCTCACCAACAACAATGACGACGTCAACAAATTCTCTCTCCCCAACATTTTCCACCCCAATCGCCGGAACGCTAAGCAACCACCAGCTCTGGTCTTGGAGGCCGGCGGAGGAGCTGGCATAGGCTGCGGTGTCGGACTGGGCTTCGGTCTCGTCGGCGGGGTTGGCCACGGCGGCGCCTCGCCCTGGAATCACCTTCACCTGGTTTTCGGGCTCGGTCTCGGCTGCGGCGTTGGCTTAGGGCTTGGATTTGGGCAAGGGATTGGCTATGGCTTATCCTTCGACTCTCTTGATTCTTATTTCTCTGATCACAAATCAAACCCTAAACATAACCCTCGTCTCATTCAGATTTGAAATTACTTTCTTCCCCATTTTGATTGCTTGTTTTAAGACATTGTTGCTAGGGAAGAGGAAGAGGATTTCATGTTCTTTTTTCTTTTTCATAAGAAATTTGTAGGTTTTTTATTGAAGATTTTTTTTTTGGGGATAAATATTCTTGTTATTTATTCTTATGTATCATTAGAAAAATTATCAAAATATTTAATCTAAAATTAGGAATAGTTTTTTACAACATTCCCAAAATTAAGAATTCTTCTCTATTTCTAGTATTGTTAAGA

mRNA sequence

AAATCAAACCAACAACATCTCTCTTTTTCATCTTCCCTCGTTCGTTCGTTCTATCTCACTATGAAATCAGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCGGAAACAACTTCCTCACCAACAACAATGACGACGTCAACAAATTCTCTCTCCCCAACATTTTCCACCCCAATCGCCGGAACGCTAAGCAACCACCAGCTCTGGTCTTGGAGGCCGGCGGAGGAGCTGGCATAGGCTGCGGTGTCGGACTGGGCTTCGGTCTCGTCGGCGGGGTTGGCCACGGCGGCGCCTCGCCCTGGAATCACCTTCACCTGGTTTTCGGGCTCGGTCTCGGCTGCGGCGTTGGCTTAGGGCTTGGATTTGGGCAAGGGATTGGCTATGGCTTATCCTTCGACTCTCTTGATTCTTATTTCTCTGATCACAAATCAAACCCTAAACATAACCCTCGTCTCATTCAGATTTGAAATTACTTTCTTCCCCATTTTGATTGCTTGTTTTAAGACATTGTTGCTAGGGAAGAGGAAGAGGATTTCATGTTCTTTTTTCTTTTTCATAAGAAATTTGTAGGTTTTTTATTGAAGATTTTTTTTTTGGGGATAAATATTCTTGTTATTTATTCTTATGTATCATTAGAAAAATTATCAAAATATTTAATCTAAAATTAGGAATAGTTTTTTACAACATTCCCAAAATTAAGAATTCTTCTCTATTTCTAGTATTGTTAAGA

Coding sequence (CDS)

ATGAAATCAGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCGGAAACAACTTCCTCACCAACAACAATGACGACGTCAACAAATTCTCTCTCCCCAACATTTTCCACCCCAATCGCCGGAACGCTAAGCAACCACCAGCTCTGGTCTTGGAGGCCGGCGGAGGAGCTGGCATAGGCTGCGGTGTCGGACTGGGCTTCGGTCTCGTCGGCGGGGTTGGCCACGGCGGCGCCTCGCCCTGGAATCACCTTCACCTGGTTTTCGGGCTCGGTCTCGGCTGCGGCGTTGGCTTAGGGCTTGGATTTGGGCAAGGGATTGGCTATGGCTTATCCTTCGACTCTCTTGATTCTTATTTCTCTGATCACAAATCAAACCCTAAACATAACCCTCGTCTCATTCAGATTTGA

Protein sequence

MKSDSNSPWKWNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGIGCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYFSDHKSNPKHNPRLIQI

Homology

[Close]

BLAST of Lcy09g000890 vs. ExPASy TrEMBL
Match: A0A0A0LSZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404970 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.6e-35
Identity = 87/136 (63.97%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MKSD-SNSPWKWNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGI 60
           MKSD SNSPW                  N F     F  +RRN K+ PALVLEAGGGAG+
Sbjct: 1   MKSDSSNSPW------------------NNFPTIFCFDQDRRNTKELPALVLEAGGGAGV 60

Query: 61  GCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYF 120
           GCG+G+GFGLVGG+GH GASPWNHLHLVFGLG GCGVGLGLG GQG GYG+SF S+DSYF
Sbjct: 61  GCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYF 118

Query: 121 SDHKSNPK-HNPRLIQ 135
           S   SNPK   P LIQ
Sbjct: 121 SHLISNPKPKQPSLIQ 118

[Close]

BLAST of Lcy09g000890 vs. ExPASy TrEMBL
Match: A0A5A7UC28 (Fibroin heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00440 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-34
Identity = 92/138 (66.67%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 1   MKSD-SNSPWKWNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPP--ALVLEAGGGA 60
           MKSD S+SPW       NNF T        FS    F  +RRN K+ P  ALVLEAGGGA
Sbjct: 1   MKSDSSSSPW-------NNFHT------TIFS----FDHDRRNTKELPALALVLEAGGGA 60

Query: 61  GIGCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDS 120
           G+GCG+G GFGLVGG+GHGGASPWNHLHLVFGLG GCGVGLGLG GQG GYG SF+SLDS
Sbjct: 61  GVGCGLGFGFGLVGGIGHGGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGFSFESLDS 120

Query: 121 YFSDHKSNPKH-NPRLIQ 135
           YFS   S+PKH  P LIQ
Sbjct: 121 YFSHLNSDPKHKQPSLIQ 121

[Close]

BLAST of Lcy09g000890 vs. ExPASy TrEMBL
Match: A0A2N9FV55 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19064 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 8.0e-25
Identity = 72/136 (52.94%), Postives = 91/136 (66.91%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGI 60
           +K+DSNS W  WN   GNN     N+   +F +    H NR  A++   +VL  GGG GI
Sbjct: 8   IKADSNSFWNIWN---GNNSNKKKNEK-KQFPVSKFLHNNRMKAEE---IVLGPGGGVGI 67

Query: 61  GCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYF 120
           GCGVG+GFGLVGG+G+GG  PWNHL LVFG+G+GCGVG+G G+GQGIG G S DSL+SY 
Sbjct: 68  GCGVGMGFGLVGGIGYGG-WPWNHLQLVFGVGMGCGVGVGFGYGQGIGNGFSLDSLESYL 127

Query: 121 SDHKSNPKHNPRLIQI 136
           S   S+      +I+I
Sbjct: 128 SKQSSSDSKKRVVIEI 135

[Close]

BLAST of Lcy09g000890 vs. ExPASy TrEMBL
Match: A0A7N2KWH8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGI 60
           +K+DS+S W  WN    +N   N       F +    H N + A++   +VL  GGG GI
Sbjct: 8   IKTDSDSFWNIWNEN-SSNKKKNEKKKKKHFPVSKFLHNNPKKAEE---IVLGPGGGVGI 67

Query: 61  GCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYF 120
           GCGVGLGFGLVGGVG+GG  PWNHL LV G+G+GCGVG+G G+GQGIGYG S +SL+SY 
Sbjct: 68  GCGVGLGFGLVGGVGYGG-WPWNHLQLVIGIGIGCGVGVGFGYGQGIGYGFSLESLESYL 127

Query: 121 SDHKSNPKHNPRLIQI 136
           S   S+      +I+I
Sbjct: 128 SKQSSSDSKKRVVIEI 138

[Close]

BLAST of Lcy09g000890 vs. ExPASy TrEMBL
Match: A0A5N6QWW9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007887 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 1   MKSDSNSPWKWNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGIG 60
           +K+DS+S WKWN     N      ++  +F +   F   R  A++   +VL  G G GIG
Sbjct: 8   IKADSDSIWKWN----GNLSNKKKNEKKQFPVAKFFQNGREAAEE---VVLGPGVGVGIG 67

Query: 61  CGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYFS 120
           CGVG+GFGLVGG+G+GG  PWNHL +VFG G+GCGVGLG G+GQGIGYG S +SL+SY S
Sbjct: 68  CGVGMGFGLVGGIGYGG-WPWNHLQVVFGAGIGCGVGLGFGYGQGIGYGFSLESLESYTS 124

Query: 121 DHKSN 126
              S+
Sbjct: 128 KRSSD 124

[Close]

BLAST of Lcy09g000890 vs. NCBI nr
Match: KAG6578355.1 (hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-55
Identity = 112/135 (82.96%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MKSDSNSPWKWNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGIG 60
           MKSDSNSPWKWNTAI NNF T    D + FSLPNIF  NRRNAKQPP LVL+AGGGAG+G
Sbjct: 1   MKSDSNSPWKWNTAITNNFHT--KADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVG 60

Query: 61  CGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYFS 120
           CGVGLGFGLVGG+GHGGASPWNHLHLVFGLGLGCGVGLGLG G+GIGYG+SFDSLDSYFS
Sbjct: 61  CGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFS 120

Query: 121 DHKSNPKHNPRLIQI 136
           DHK NP+  P LIQI
Sbjct: 121 DHKPNPRQKPPLIQI 133

[Close]

BLAST of Lcy09g000890 vs. NCBI nr
Match: KGN63146.1 (hypothetical protein Csa_022245 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.8e-34
Identity = 87/136 (63.97%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 1   MKSD-SNSPWKWNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGI 60
           MKSD SNSPW                  N F     F  +RRN K+ PALVLEAGGGAG+
Sbjct: 1   MKSDSSNSPW------------------NNFPTIFCFDQDRRNTKELPALVLEAGGGAGV 60

Query: 61  GCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYF 120
           GCG+G+GFGLVGG+GH GASPWNHLHLVFGLG GCGVGLGLG GQG GYG+SF S+DSYF
Sbjct: 61  GCGLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYF 118

Query: 121 SDHKSNPK-HNPRLIQ 135
           S   SNPK   P LIQ
Sbjct: 121 SHLISNPKPKQPSLIQ 118

[Close]

BLAST of Lcy09g000890 vs. NCBI nr
Match: KAA0051071.1 (fibroin heavy chain [Cucumis melo var. makuwa] >TYK02741.1 fibroin heavy chain [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 3.9e-34
Identity = 92/138 (66.67%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 1   MKSD-SNSPWKWNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPP--ALVLEAGGGA 60
           MKSD S+SPW       NNF T        FS    F  +RRN K+ P  ALVLEAGGGA
Sbjct: 1   MKSDSSSSPW-------NNFHT------TIFS----FDHDRRNTKELPALALVLEAGGGA 60

Query: 61  GIGCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDS 120
           G+GCG+G GFGLVGG+GHGGASPWNHLHLVFGLG GCGVGLGLG GQG GYG SF+SLDS
Sbjct: 61  GVGCGLGFGFGLVGGIGHGGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGFSFESLDS 120

Query: 121 YFSDHKSNPKH-NPRLIQ 135
           YFS   S+PKH  P LIQ
Sbjct: 121 YFSHLNSDPKHKQPSLIQ 121

[Close]

BLAST of Lcy09g000890 vs. NCBI nr
Match: XP_030955948.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Quercus lobata])

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-23
Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGI 60
           +K+DS+S W  WN    +N   N       F +    H N + A++   +VL  GGG GI
Sbjct: 8   IKTDSDSFWNIWNEN-SSNKKKNEKKKKKHFPVSKFLHNNPKKAEE---IVLGPGGGVGI 67

Query: 61  GCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYF 120
           GCGVGLGFGLVGGVG+GG  PWNHL LV G+G+GCGVG+G G+GQGIGYG S +SL+SY 
Sbjct: 68  GCGVGLGFGLVGGVGYGG-WPWNHLQLVIGIGIGCGVGVGFGYGQGIGYGFSLESLESYL 127

Query: 121 SDHKSNPKHNPRLIQI 136
           S   S+      +I+I
Sbjct: 128 SKQSSSDSKKRVVIEI 138

[Close]

BLAST of Lcy09g000890 vs. NCBI nr
Match: KAG5528001.1 (hypothetical protein RHGRI_028808 [Rhododendron griersonianum])

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-23
Identity = 66/124 (53.23%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 2   KSDSNSPWKWNTAIGNNFLTNNNDDVNKFSLPNIFHPNRRNAKQPPALVLEAGGGAGIGC 61
           K+D NS WKW          +  + V KF         + ++K+  A  L  GGGAGIGC
Sbjct: 11  KADPNSFWKWKGINTAKKKRSRQNSVTKFL--------QESSKRIEAAALGPGGGAGIGC 70

Query: 62  GVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSLDSYFSD 121
           GVG+GFGLVGGVG+GG  PW+HL + FG+G+GCG GLG+GFGQGIG GLS DSL SY S+
Sbjct: 71  GVGIGFGLVGGVGYGG-GPWSHLRMAFGIGMGCGAGLGIGFGQGIGVGLSMDSLQSYLSE 125

Query: 122 HKSN 126
            KS+
Sbjct: 131 EKSD 125

[Close]

BLAST of Lcy09g000890 vs. TAIR 10
Match: AT1G66820.1 (glycine-rich protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.7e-11
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 54  GGGAGIGCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFD 113
           G G GIGCG G+G GL GG+G G +   +H ++V G G+GCG+G G G+G G+G G SFD
Sbjct: 42  GIGGGIGCGAGIGIGLSGGLGIGASEGLDHSNVVLGFGIGCGIGFGFGYGFGVGGGYSFD 101

Query: 114 SLDSYF 120
            +   F
Sbjct: 102 DIKERF 107

[Close]

BLAST of Lcy09g000890 vs. TAIR 10
Match: AT4G10330.1 (glycine-rich protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 56  GAGIGCGVGLGFGLVGGVGHGGASPWNHLHLVFGLGLGCGVGLGLGFGQGIGYGLSFDSL 115
           G G+GCG G G GL+GGVG G   P     L FGLG G G G+G+GFG G+G G ++D  
Sbjct: 34  GLGVGCGFGFGAGLIGGVGFGPGVP----GLQFGLGFGAGCGIGVGFGYGVGRGAAYDHS 93

Query: 116 DSYFS 121
            SY++
Sbjct: 94  RSYYN 94

The following BLAST results are available for this feature:

BLAST of Lcy09g000890 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy09g000890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSZ2	8.6e-35	63.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404970 PE=4 SV=1	[more]
A0A5A7UC28	1.9e-34	66.67	Fibroin heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154...	[more]
A0A2N9FV55	8.0e-25	52.94	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19064 PE=4 SV=1	[more]
A0A7N2KWH8	1.5e-23	50.74	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5N6QWW9	2.6e-23	52.00	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007887 PE=4 SV=1	[more]

BLAST of Lcy09g000890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578355.1	1.4e-55	82.96	hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN63146.1	1.8e-34	63.97	hypothetical protein Csa_022245 [Cucumis sativus]	[more]
KAA0051071.1	3.9e-34	66.67	fibroin heavy chain [Cucumis melo var. makuwa] >TYK02741.1 fibroin heavy chain [...	[more]
XP_030955948.1	3.1e-23	50.74	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Quercus lobata]	[more]
KAG5528001.1	3.1e-23	53.23	hypothetical protein RHGRI_028808 [Rhododendron griersonianum]	[more]

BLAST of Lcy09g000890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66820.1	1.7e-11	50.00	glycine-rich protein	[more]
AT4G10330.1	1.2e-09	50.77	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34201:SF6	GLYCINE-RICH PROTEIN	coord: 2..129
None	No IPR available	PANTHER	PTHR34201	GLYCINE-RICH PROTEIN	coord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy09g000890.1	Lcy09g000890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane