Lcy09g000050 (gene) Sponge gourd (P93075) v1

Overview
NameLcy09g000050
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic
LocationChr09: 41476 .. 42050 (+)
RNA-Seq ExpressionLcy09g000050
SyntenyLcy09g000050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGAGGGATGGCGTGGTGTTGCAGCTCTGCCTCAAAGAGTAACAACAGCACCATCTTCCCATTCCCGCCCCATCGGCATCGACTGCTGCCAAATAAGAGTAAAAGTAAATCATCCAACATCTCCTTCGCCGCAGCGGCAAGATCTTCGCTGTCCAAAAGATGCCAAAAGTGTGGAGGTAAAGGGGCCATCGATTGTCCTGGATGCAAGGTTACCCATCCCATCCCATCTCTCTCTCAATTCTCAATTCTCAATTCAATTTCAGGCCATTCTCTGCATTCCACTCATCTGCATCTTCTTCACTTATATCTTTATATCTTCTCTTTGGTTTCAGGGGACTGGCAAAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTCACTCACTCGCTCAATCTTTTACTTTTACTTCAACTCAAACTTATTTAATCCATCCCTTCATTTTCTTTAATTCTTTGTTTCAGATGTTTCGAGTGTCAAGGATTCGGATTAAAGAGCTGCCCTGGATGTGGAAACGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAAAGCGTACACGAGTTTAG

mRNA sequence

ATGGAAAGAGGGATGGCGTGGTGTTGCAGCTCTGCCTCAAAGAGTAACAACAGCACCATCTTCCCATTCCCGCCCCATCGGCATCGACTGCTGCCAAATAAGAGTAAAAGTAAATCATCCAACATCTCCTTCGCCGCAGCGGCAAGATCTTCGCTGTCCAAAAGATGCCAAAAGTGTGGAGGGGACTGGCAAAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTCGAGTGTCAAGGATTCGGATTAAAGAGCTGCCCTGGATGTGGAAACGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAAAGCGTACACGAGTTTAG

Coding sequence (CDS)

ATGGAAAGAGGGATGGCGTGGTGTTGCAGCTCTGCCTCAAAGAGTAACAACAGCACCATCTTCCCATTCCCGCCCCATCGGCATCGACTGCTGCCAAATAAGAGTAAAAGTAAATCATCCAACATCTCCTTCGCCGCAGCGGCAAGATCTTCGCTGTCCAAAAGATGCCAAAAGTGTGGAGGGGACTGGCAAAAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTCGAGTGTCAAGGATTCGGATTAAAGAGCTGCCCTGGATGTGGAAACGGAGGACTCACCCCCGAACAAAGGGGAGAAAGATAAAGCGTACACGAGTTTAG

Protein sequence

MERGMAWCCSSASKSNNSTIFPFPPHRHRLLPNKSKSKSSNISFAAAARSSLSKRCQKCGGDWQKQEKRKHLRALEMFRVSRIRIKELPWMWKRRTHPRTKGRKIKRTRV
Homology
[Close]
BLAST of Lcy09g000050 vs. ExPASy TrEMBL
Match: A0A6J1JSI3 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487154 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.8e-11
Identity = 42/59 (71.19%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 5  MAWCCSSASKSNNSTI-FPFPPHRHRLLP-NKSKSKSSNISFAAAARSSLSKRCQKCGG 62
          MAWC SS SKSNNST  FPFPPH   +LP NKS+SK SNI FAAA + SL KRCQ CGG
Sbjct: 1  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKSRSKPSNIPFAAAPKFSLPKRCQTCGG 59

[Close]
BLAST of Lcy09g000050 vs. ExPASy TrEMBL
Match: A0A6J1HLG5 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464051 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 5  MAWCCSSASKSNNSTI-FPFPPHRHRLLP-NKSKSKSSNISFAAAARSSLSKRCQKCGG 62
          MAWC SS SKSNNST  FPFPPH   +LP NK +SK SNI FAAA + SL KRCQ CGG
Sbjct: 1  MAWCGSSVSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGG 59

[Close]
BLAST of Lcy09g000050 vs. ExPASy TrEMBL
Match: A0A6J1DHW0 (uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020203 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 40/68 (58.82%), Postives = 43/68 (63.24%), Query Frame = 0 

Query: 1  MERGMAWCCSSASKSNNSTIFPF----PPHRHRLL---PNKSKSKSSNISFAAAARSSLS 60
          ME G    CS +S + N TIFPF    PP  HRLL   PNK K + SNISF AAA  SL 
Sbjct: 1  MEMGTGRSCSCSSHTIN-TIFPFPFPPPPPPHRLLISPPNKFK-RRSNISFGAAATFSLP 60

Query: 61 KRCQKCGG 62
          KRCQKCGG
Sbjct: 61 KRCQKCGG 66

[Close]
BLAST of Lcy09g000050 vs. NCBI nr
Match: XP_038901777.1 (uncharacterized protein LOC120088499 isoform X2 [Benincasa hispida])

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-13
Identity = 55/92 (59.78%), Postives = 64/92 (69.57%), Query Frame = 0 

Query: 1  MERGMAWCCSSASKSNNSTIFPFPPHR--HRLLPNKSKSKSSNISF--AAAARSSLSKRC 60
          M   MA   + AS +N   IFPF P+R      P  SK+KSSNIS   AAAARS L KRC
Sbjct: 1  MAMDMAMAMAMASSNN---IFPFSPYRLVRSSPPYTSKTKSSNISLAAAAAARSLLPKRC 60

Query: 61 QKCGGDWQKQEKRKHLRALEMFRVSRIRIKEL 89
          QKCGGD ++QEKRK+ RALEMFR+SRI I+EL
Sbjct: 61 QKCGGDRKEQEKRKYFRALEMFRLSRIWIEEL 89

[Close]
BLAST of Lcy09g000050 vs. NCBI nr
Match: XP_023521952.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553311.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553319.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-11
Identity = 42/59 (71.19%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 5  MAWCCSSASKSNNSTI-FPFPPHRHRLLP-NKSKSKSSNISFAAAARSSLSKRCQKCGG 62
          MAWC SS SKSNNST  FPFPPH   +LP NKS+SK SNI FAAA + SL KRCQ CGG
Sbjct: 1  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKSRSKPSNIPFAAAPKFSLPKRCQTCGG 59

[Close]
BLAST of Lcy09g000050 vs. NCBI nr
Match: XP_022990183.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 3.8e-11
Identity = 42/59 (71.19%), Postives = 45/59 (76.27%), Query Frame = 0 

Query: 5  MAWCCSSASKSNNSTI-FPFPPHRHRLLP-NKSKSKSSNISFAAAARSSLSKRCQKCGG 62
          MAWC SS SKSNNST  FPFPPH   +LP NKS+SK SNI FAAA + SL KRCQ CGG
Sbjct: 1  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKSRSKPSNIPFAAAPKFSLPKRCQTCGG 59

[Close]
BLAST of Lcy09g000050 vs. NCBI nr
Match: KAG7033428.1 (hypothetical protein SDJN02_07484 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-10
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 5  MAWCCSSASKSNNSTI-FPFPPHRHRLLP-NKSKSKSSNISFAAAARSSLSKRCQKCGG 62
          MAWC SS SKSNNST  FPFPPH   +LP NK +SK SNI FAAA + SL KRCQ CGG
Sbjct: 1  MAWCGSSVSKSNNSTFPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGG 59

[Close]
BLAST of Lcy09g000050 vs. NCBI nr
Match: XP_022963874.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0 

Query: 5  MAWCCSSASKSNNSTI-FPFPPHRHRLLP-NKSKSKSSNISFAAAARSSLSKRCQKCGG 62
          MAWC SS SKSNNST  FPFPPH   +LP NK +SK SNI FAAA + SL KRCQ CGG
Sbjct: 1  MAWCGSSVSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNIPFAAAPKFSLPKRCQTCGG 59

The following BLAST results are available for this feature:
BLAST of Lcy09g000050 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy09g000050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JSI31.8e-1171.19protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HLG51.2e-1069.49protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1DHW01.2e-0558.82uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
BLAST of Lcy09g000050 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038901777.13.1e-1359.78uncharacterized protein LOC120088499 isoform X2 [Benincasa hispida][more]
XP_023521952.13.8e-1171.19protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
XP_022990183.13.8e-1171.19protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita maxima][more]
KAG7033428.11.5e-1069.49hypothetical protein SDJN02_07484 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022963874.12.5e-1069.49protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata][more]
BLAST of Lcy09g000050 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy09g000050.1Lcy09g000050.1mRNA