Lcy08g017670 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g017670
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Alba domain-containing protein
Location	Chr08: 48363103 .. 48365218 (-)
RNA-Seq Expression	Lcy08g017670
Synteny	Lcy08g017670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTTTGACCTTCAATAACCCGAAAAACTAGGGTTTTTGAGTTGCAGTGTTCTAGGGTTTTTGCGAGGAGGAAAAGCTCGATGGAAGAAATTGTAGAAGGTGTGAACTCCATGAACTTGGCCTCCGATTCGTTTAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTCTTCTATGTCAATCTCGCTAAGGTTTGCCATTTCCCAATGTTTCGATTCCATCTGTTCTCCTTACTGGGTTTTGTATAATTACTATTCTGAGGATTTTTGTTTTCCAAATGGTTGCTGTATCCAGTTTAATTATAATGTCTCGTGTTTCTGATTTTTGTTTTTGGTTTTTAATGTAGAGATACATGCAGCAGCATGAGGAAGTCGAGCTTTCTGCTCTTGGAATGGGTAATTCTGCTGCATTATGCTTCCATTTTTGTTCTTTACTTTACCCGAGTTTAAATCCTTAACCCTGGAAGAAATGAGACTGTATAATTTTCATTTGATTCAAAGTTTGCCTTACCTGGCTAATGCTGAGTTTTGGGATTATCAGTAAATGGTGAAGTATTGTGGAGTTGTATTAATGTGCTCTTAACGGTTGCTTATATTCATCCTTTGTTTGAGCAATTTCTGATTCGTTTGTTTCCTTTCTTGTTGCCATTGGAAAGTCTTCCATGGATCTGACGACCTTAATACTTCTCATCTCACAACCTGTGTTCTATGGCACACTATGTGGATTAACATTAACTTCGTTGAAAAGTGACAAAATTTTCGGATGTTGACTAGGGACTTGAGTTTTATTGGAACTAGATGGACTATAAAGAATGTTTTGGAAAAGCTTGGAAGATATATCCTAATATTGTCTTTGTTTACGTCAACTTTTAGATAACTGTTGTATTCAGAATGAAGCTAACAGGCTTGACTTTAAGAAACTTTGTTGAAGATTTTTCTGGCATTAGTCACATTTGGTTTTTGGTGCATCCTTTACCCTATTATTTACCCTCCCAATTGAAGAACTTTTGTATTTTTTAATTTAATTGGAACTTGCTCGTCAATTATCAAGGCCATAACATTTTACCTCTGACTCCTTCACTGATTGATAAGCATGCTTGCAATGTTTTGCAGCAATTGCCACGGTTGTTACAGTTGCCGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAGTAAGGTTTCTAGCTTTCTGTACTTTCAGACAAGAAGAATGTTTACTTTTGTTCCTTTTAGTGACTTGCACTAAATTTACAGAGATCGCAACTTCAACTGTTGATATCAAGGACGACTCGAGAGGAAGACCTGTCCAAAAGGCTAAGGTAAAGATTACCCCATGAATATTTAAGATCCCCTAATAAGTACGTACTTGCCAAATGCAAACAGGGGCATTTACTGGAGAAAGTCAAATTGTGAACCAGTATGAAGGATTTTTAAAAAATGGTTGATAGAGTAATCATGGTATATGTAATTCGGACATCAAAACACTGACAAGGCTGGTCTGCATGTTTTAGTTGCATGGTCTACGTTTTGTTGTTTGGCAATGAGATTGAGGTCATACAATGCTTTTGTATGTTTATTTTTTCGTTACATGTTTTAGTTGCTTGGTTACTGATTGTATTCATTGAGGTCATCATCTTTGACCTCAATGAATTTGATATTTTCTTTTTCCAAGAGCTTCTTGAATACTGATTGTAACTTTTGCCTCGTCAGATTGAGATAGTGCTGGGTAAAACCGAAAACTTCGATGAATTGATGGCAGCTGCTGCTGAGGAAAGGGGTGAGATAGGTGACGCAGATGAGCAGAGTTAAATGATGAATTATATTTGCTGTATCTTTTCTTTTAGTTACAATTTTTGTTTGTGATGAACCGAATTTTCCATCAATTATTTGTAGCTCTCTAGGTACTTGAGGAGTTGAGGCACTATTTTTCGTAGTGAGTTTGTTCATAATTTCATTTTAGGGATATTCACAATTTATTTGGAGTCTTTTACCATATAGAAAACCAAATTTTGTAATGTGATTTTTTGCTTCCAATCATTTGTTTTTTTTTTCTTTATATAAAATTTATTTTCCTAGATATCCTTGCCAAGACATTTAGGATG

mRNA sequence

CTTCCTTTGACCTTCAATAACCCGAAAAACTAGGGTTTTTGAGTTGCAGTGTTCTAGGGTTTTTGCGAGGAGGAAAAGCTCGATGGAAGAAATTGTAGAAGGTGTGAACTCCATGAACTTGGCCTCCGATTCGTTTAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTCTTCTATGTCAATCTCGCTAAGAGATACATGCAGCAGCATGAGGAAGTCGAGCTTTCTGCTCTTGGAATGGCAATTGCCACGGTTGTTACAGTTGCCGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAAGATCGCAACTTCAACTGTTGATATCAAGGACGACTCGAGAGGAAGACCTGTCCAAAAGGCTAAGATTGAGATAGTGCTGGGTAAAACCGAAAACTTCGATGAATTGATGGCAGCTGCTGCTGAGGAAAGGGGTGAGATAGGTGACGCAGATGAGCAGAGTTAAATGATGAATTATATTTGCTGTATCTTTTCTTTTAGTTACAATTTTTGTTTGTGATGAACCGAATTTTCCATCAATTATTTGTAGCTCTCTAGGTACTTGAGGAGTTGAGGCACTATTTTTCGTAGTGAGTTTGTTCATAATTTCATTTTAGGGATATTCACAATTTATTTGGAGTCTTTTACCATATAGAAAACCAAATTTTGTAATGTGATTTTTTGCTTCCAATCATTTGTTTTTTTTTTCTTTATATAAAATTTATTTTCCTAGATATCCTTGCCAAGACATTTAGGATG

Coding sequence (CDS)

ATGGAAGAAATTGTAGAAGGTGTGAACTCCATGAACTTGGCCTCCGATTCGTTTAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCCTTGTTCTTCTATGTCAATCTCGCTAAGAGATACATGCAGCAGCATGAGGAAGTCGAGCTTTCTGCTCTTGGAATGGCAATTGCCACGGTTGTTACAGTTGCCGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAAGATCGCAACTTCAACTGTTGATATCAAGGACGACTCGAGAGGAAGACCTGTCCAAAAGGCTAAGATTGAGATAGTGCTGGGTAAAACCGAAAACTTCGATGAATTGATGGCAGCTGCTGCTGAGGAAAGGGGTGAGATAGGTGACGCAGATGAGCAGAGTTAA

Protein sequence

MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEERGEIGDADEQS

Homology

[Close]

BLAST of Lcy08g017670 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-48
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEI +GVN+MNLA+DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 R 122
           +
Sbjct: 121 K 121

[Close]

BLAST of Lcy08g017670 vs. ExPASy TrEMBL
Match: A0A5D3BH52 (DNA/RNA-binding protein Alba-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00150 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 127/131 (96.95%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL+SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEI+LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RGEIGDADEQS 132
           RGEIGDADEQS
Sbjct: 121 RGEIGDADEQS 131

[Close]

BLAST of Lcy08g017670 vs. ExPASy TrEMBL
Match: A0A1S3C651 (uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103497344 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 127/131 (96.95%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL+SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEI+LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RGEIGDADEQS 132
           RGEIGDADEQS
Sbjct: 121 RGEIGDADEQS 131

[Close]

BLAST of Lcy08g017670 vs. ExPASy TrEMBL
Match: A0A6J1G312 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111450368 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.7e-56
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGV+SMNL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKIEI+LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RGEIGDADEQS 132
           R E GDADEQS
Sbjct: 121 RAETGDADEQS 131

[Close]

BLAST of Lcy08g017670 vs. ExPASy TrEMBL
Match: A0A6J1KJN4 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111493796 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGV+SMNL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKIEI LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEIFLGKTENFDELMAAAAEE 120

Query: 121 RGEIGDADEQS 132
           R E GDADEQS
Sbjct: 121 RAETGDADEQS 131

[Close]

BLAST of Lcy08g017670 vs. ExPASy TrEMBL
Match: A0A6J1CNW3 (uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC111012990 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.8e-56
Identity = 120/131 (91.60%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL  D +KKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSLNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGL VEKKIATSTVDIKDDSRGRPVQKAKIEI+LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLVVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RGEIGDADEQS 132
           RG+ GD DEQS
Sbjct: 121 RGDTGDTDEQS 131

[Close]

BLAST of Lcy08g017670 vs. NCBI nr
Match: XP_008457716.1 (PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0061596.1 DNA/RNA-binding protein Alba-like protein [Cucumis melo var. makuwa] >TYJ97805.1 DNA/RNA-binding protein Alba-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 2.6e-59
Identity = 127/131 (96.95%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL+SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEI+LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RGEIGDADEQS 132
           RGEIGDADEQS
Sbjct: 121 RGEIGDADEQS 131

[Close]

BLAST of Lcy08g017670 vs. NCBI nr
Match: XP_004139317.1 (uncharacterized protein At2g34160 [Cucumis sativus] >KAE8651529.1 hypothetical protein Csa_019360 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 125/131 (95.42%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL+SDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQKAKIEI+LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RGEIGDADEQS 132
           RGEIG+ADEQS
Sbjct: 121 RGEIGEADEQS 131

[Close]

BLAST of Lcy08g017670 vs. NCBI nr
Match: XP_038890892.1 (uncharacterized protein At2g34160-like [Benincasa hispida])

HSP 1 Score: 231.9 bits (590), Expect = 3.2e-57
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLAS---DSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMA 60
           MEEIVEGVNSMNL+S   DS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMA
Sbjct: 1   MEEIVEGVNSMNLSSDSYDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMA 60

Query: 61  IATVVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAA 120
           IATVVTVAEILKNNGLA+EKKIATSTVDIKDDSRGRPVQKAKIEI+LGKT+NFDELMAAA
Sbjct: 61  IATVVTVAEILKNNGLAIEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTKNFDELMAAA 120

Query: 121 AEERGEIGDADEQS 132
           AEERGEIGDADEQS
Sbjct: 121 AEERGEIGDADEQS 134

[Close]

BLAST of Lcy08g017670 vs. NCBI nr
Match: KAG6599408.1 (hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.4 bits (581), Expect = 3.6e-56
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGV+SMNL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 266 MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 325

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKIEI+LGKTENFDELMAAAAEE
Sbjct: 326 VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 385

Query: 121 RGEIGDADEQS 132
           R E GDADEQS
Sbjct: 386 RAETGDADEQS 396

[Close]

BLAST of Lcy08g017670 vs. NCBI nr
Match: XP_022946216.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >KAG7030395.1 hypothetical protein SDJN02_08742 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.4 bits (581), Expect = 3.6e-56
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGV+SMNL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKIEI+LGKTENFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RGEIGDADEQS 132
           R E GDADEQS
Sbjct: 121 RAETGDADEQS 131

[Close]

BLAST of Lcy08g017670 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 197.6 bits (501), Expect = 6.3e-51
Identity = 109/131 (83.21%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEI EGVN+MNLA D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEE 120

Query: 121 RGEIGDADEQS 132
           + E  +A EQ+
Sbjct: 121 K-EAAEAQEQN 130

[Close]

BLAST of Lcy08g017670 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-49
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLASDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEI +GVN+MNLA+DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAEE 120
           VVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAKIEI L K+E FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 R 122
           +
Sbjct: 121 K 121

[Close]

BLAST of Lcy08g017670 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 151.4 bits (381), Expect = 5.1e-37
Identity = 76/99 (76.77%), Postives = 90/99 (90.91%), Query Frame = 0


Query: 16  DSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAV 75
           ++ KKNRIQVSNTKKPLFFYVNLAKRY+QQH EVELSALGMAI TVVT++EILKNNGLA 
Sbjct: 33  ETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLAT 92

Query: 76  EKKIATSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELM 115
           EKK+ TSTV +KD+++G+ VQKAKIEIVLGK++ FD L+
Sbjct: 93  EKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131

The following BLAST results are available for this feature:

BLAST of Lcy08g017670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	1.7e-48	85.12	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of Lcy08g017670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BH52	1.3e-59	96.95	DNA/RNA-binding protein Alba-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C651	1.3e-59	96.95	uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103497344 P...	[more]
A0A6J1G312	1.7e-56	93.13	uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KJN4	2.9e-56	93.13	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114937...	[more]
A0A6J1CNW3	3.8e-56	91.60	uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of Lcy08g017670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457716.1	2.6e-59	96.95	PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0061596.1 D...	[more]
XP_004139317.1	1.7e-58	95.42	uncharacterized protein At2g34160 [Cucumis sativus] >KAE8651529.1 hypothetical p...	[more]
XP_038890892.1	3.2e-57	93.28	uncharacterized protein At2g34160-like [Benincasa hispida]	[more]
KAG6599408.1	3.6e-56	93.13	hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946216.1	3.6e-56	93.13	uncharacterized protein At2g34160-like [Cucurbita moschata] >KAG7030395.1 hypoth...	[more]

BLAST of Lcy08g017670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29250.1	6.3e-51	83.21	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	1.2e-49	85.12	Alba DNA/RNA-binding protein	[more]
AT3G04620.1	5.1e-37	76.77	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..131 e-value: 2.5E-62 score: 207.2
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 1..131
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 21..79 e-value: 2.8E-13 score: 49.5
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 19..130 e-value: 1.9E-56 score: 190.9
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 20..115
None	No IPR available	PANTHER	PTHR31947:SF32	SUBFAMILY NOT NAMED	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g017670.1	Lcy08g017670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding