Lcy08g017540 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g017540
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribosomal protein L31
Location	Chr08: 48274344 .. 48276371 (-)
RNA-Seq Expression	Lcy08g017540
Synteny	Lcy08g017540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCAGTTAACTGAGGGATGCTTCCATCTTCATCAAGGACATTAGAGTAATTTAACAACTCCCTTCACCGTCTTCCTTACCCGCCGCCCGCCGTCAGTAAAAGAGAGCTTCTTCTTACAATCTCAGTTTCAGCTTCCTCTTCTTTCAGTGACACAAGGTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTTTTCTTCATCCATGCGTGTTTCGGTTCAATTGGATGGTAATTGTATGTTCGATTTGGCGAAATTGATCTTCTCTTTTCCGTTTCTACCGATTCAAGCTAAATCCTAAATACTAACTCGCGGCTGTTCTCAGAATCGGACGCCTTTCAACAATCAGAGCCTTGGAGGAGGATTTCGACACCCACTCCTTCACAACTTGAGGGTTGTTCATATCTGTAAGTTTGTTCTCCGTTTTTGAAGTCATTAACTTCTTCCAGCTACCAATTTATGAATGATTTTCTTTGGGGTTGCCTTTTTTGTATTCGGATTCATTAAACACACGCGAGAGATTTCTGTTTCATCGAAAGTGATCTCTGTGAGAGAATATCTGCTCATCGTTACGCGGCCCAGTTAGGGTTTAGGATGAATTATATACATATATATATTAAGCCTAGGGTTTGCTTTCCTTTCCTTAATTCCTTCCACAGGCAGTACGCACGCCTCCTTCGACCTTCACCCTTTCCCTCCCACTCGCAAAAGCCGCTCCCAGCCTCTCTCTGTTCAACCACCGCCGCTTTGTTCAACCACCGTTGCTCGCACTTTCATTCGCGCATCGCAGCAGCCAAGCCAACAAGGTGGATTTTCGTTTTACTTTCTCCTTTCTCTCTCTCTCTCTCACTCTTTTTTTGTTTGTTTGTTTGAAACTCTGGCTTTACTTTGTCATTTTTTTCCTTTTCAGTTTTCACGCCTCTTAAATCGAGATTTAAATTGAAACATTACTTCTGCTCTGCTCGTCTGCTTGATTACTCAAAGTTTTACGTCCTGTGACTCTTGAGATGCCATCTTTAAATGATGGTATAATTAATTAGCAGAGACTTTGTATCTGTTAACGCTTCACTCTTCTCCCCTTCCTCTCAGAAAAGTAATCTACAGCCGCATTGTGGTGGTCATTTTCAAAATTCATACTCTTTTGGGTTACGAATATTGAACATTGCGTAATGCCCACCAACTGTTTGATGGAATTCTTCTATGAAATTGTATATTTGTACTTGTTCATCCTCCTTCATTCTCCCTTGATGCGGCCAAAGTGAGGTAGCTCAATGGCAATTGATATGTACACTTGATCTAGAGGTCAGAGTTTTGGATCCCCATTCCCATATATTGTTGAACTAAAAGAAAAATTATCCCCCTATCCCCCTTGATGTGGCTGTCACTTTCTAAGTTTCTGCTCTTTTGGTGACGAACATTGAACATTGCATAATGCCCACCAAATGTTTGATGAAATTCTACTATAAGGTGGTGTATTTGTACATGTTGACGCTTCTTCATTCCCCCCAATGTGGCTGTCACTTCCAAAATTTCTACTCCTTTAGGATGATGAAACATTGAACATTGCATAGTGCCCACCAAATGTTTGACGAAATTCTTCTAATAAGTGATATATTCGTACATGGTCGTCCTTCTTCAGTTCTTCTCTCCCCTACGTATGAACAGAAAAAAGTTGTCCGTTGAGAATTGGAACTTGTGGATTTAGATTCAAATGTTGCTTCACTGTGATAGTTATCTTTCTGTTTGTACATAATATTTCTCTAGAAGCTTTGGTTTGTAAGTAATAGTGATGATTTCAGATCTGTACAATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAATTGGCTCAAAGTGTTGGGCAGATAGCCAAGTTCAAACGTCGTTATGAGAAGGGGATTGCTGAGAATGTTGAAAATGCTGAAAAGTGA

mRNA sequence

CCTCAGTTAACTGAGGGATGCTTCCATCTTCATCAAGGACATTAGAGTAATTTAACAACTCCCTTCACCGTCTTCCTTACCCGCCGCCCGCCGTCAGTAAAAGAGAGCTTCTTCTTACAATCTCAGTTTCAGCTTCCTCTTCTTTCAGTGACACAAGAATCGGACGCCTTTCAACAATCAGAGCCTTGGAGGAGGATTTCGACACCCACTCCTTCACAACTTGAGGGTTGTTCATATCTGCAGTACGCACGCCTCCTTCGACCTTCACCCTTTCCCTCCCACTCGCAAAAGCCGCTCCCAGCCTCTCTCTGTTCAACCACCGCCGCTTTGTTCAACCACCGTTGCTCGCACTTTCATTCGCGCATCGCAGCAGCCAAGCCAACAAGATCTGTACAATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAATTGGCTCAAAGTGTTGGGCAGATAGCCAAGTTCAAACGTCGTTATGAGAAGGGGATTGCTGAGAATGTTGAAAATGCTGAAAAGTGA

Coding sequence (CDS)

ATGAAGAAAGGCTTGCACCCTCAAATGCAGTGGATATCATATGTCACTCAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTCAGAGCAAGGCGCCAATTGGCTCAAAGTGTTGGGCAGATAGCCAAGTTCAAACGTCGTTATGAGAAGGGGATTGCTGAGAATGTTGAAAATGCTGAAAAGTGA

Protein sequence

MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEKGIAENVENAEK

Homology

[Close]

BLAST of Lcy08g017540 vs. ExPASy TrEMBL
Match: A0A6J1CPB3 (uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013069 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 68/71 (95.77%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRA+RQ+A+SVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GIAENVENAEK 72
          GIAENVENAEK
Sbjct: 61 GIAENVENAEK 71

[Close]

BLAST of Lcy08g017540 vs. ExPASy TrEMBL
Match: A0A6J1G367 (uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC111450371 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLA+S+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 61 GIAENVENAEK 72
           I EN E+ EK
Sbjct: 61 DIVENDESVEK 71

[Close]

BLAST of Lcy08g017540 vs. ExPASy TrEMBL
Match: A0A6J1KGB8 (uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.7e-27
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVY FRARRQLA+SVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 61 GIAENVENAEK 72
           I EN E+ EK
Sbjct: 61 DIVENDESVEK 71

[Close]

BLAST of Lcy08g017540 vs. ExPASy TrEMBL
Match: A0A2I4ESM8 (uncharacterized protein LOC108992325 OS=Juglans regia OX=51240 GN=LOC108992325 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.4e-25
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRY-E 60
          MKKGLHPQ+QWISYVTQSGRLMHVMMTKIHHVGKVYHFRA+RQ+A+S+GQ+AKFKRRY E
Sbjct: 1  MKKGLHPQLQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESIGQVAKFKRRYEE 60

Query: 61 KGIAENVEN 69
          KG AE+ EN
Sbjct: 61 KGNAEDNEN 69

[Close]

BLAST of Lcy08g017540 vs. ExPASy TrEMBL
Match: A0A067F7J7 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0303881mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.0e-24
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIH+VGKVYHFRARRQ+AQS+GQ+AKF+RRYE+
Sbjct: 4  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHFRARRQMAQSIGQVAKFRRRYEQ 63

Query: 61 GIAENVENAEK 72
           +  + EN EK
Sbjct: 64 QL--DAENNEK 72

[Close]

BLAST of Lcy08g017540 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 68/71 (95.77%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRA+RQ+A+SVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GIAENVENAEK 72
          GIAENVENAEK
Sbjct: 61 GIAENVENAEK 71

[Close]

BLAST of Lcy08g017540 vs. NCBI nr
Match: XP_038890309.1 (uncharacterized protein LOC120079925 [Benincasa hispida] >XP_038890310.1 uncharacterized protein LOC120079925 [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RARRQ+A+SVGQIA+FKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQMAESVGQIARFKRRYEK 60

Query: 61 GIAENVENAEK 72
           IAENVEN +K
Sbjct: 61 MIAENVENTDK 71

[Close]

BLAST of Lcy08g017540 vs. NCBI nr
Match: XP_022946219.1 (uncharacterized protein LOC111450371 [Cucurbita moschata])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 64/71 (90.14%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLA+S+GQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 61 GIAENVENAEK 72
           I EN E+ EK
Sbjct: 61 DIVENDESVEK 71

[Close]

BLAST of Lcy08g017540 vs. NCBI nr
Match: XP_023547264.1 (uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 9.3e-27
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RARRQLA+SVGQIAKFKRRYEK
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60

Query: 61 GIAENVENAEK 72
           I EN E+ EK
Sbjct: 61 DIVENDESVEK 71

[Close]

BLAST of Lcy08g017540 vs. NCBI nr
Match: KAG7030387.1 (hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RARRQLA+S+GQIAKFKRRYEK
Sbjct: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115

Query: 61  GIAENVENAEK 72
            I EN E+ EK
Sbjct: 116 DIVENDESVEK 126

[Close]

BLAST of Lcy08g017540 vs. TAIR 10
Match: AT5G55125.1 (Ribosomal protein L31 )

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-26
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMT+IHHVGKVYHF A+RQ+AQS+GQIAKFKRR+ +
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFNE 60

Query: 61 GIAENVE 68
            AE  E
Sbjct: 61 QEAEAAE 67

[Close]

BLAST of Lcy08g017540 vs. TAIR 10
Match: AT5G55125.2 (Ribosomal protein L31 )

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-26
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAQSVGQIAKFKRRYEK 60
          MKKGLHPQMQWISYVTQSGRLMHVMMT+IHHVGKVYHF A+RQ+AQS+GQIAKFKRR+ +
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRFNE 60

Query: 61 GIAENVE 68
            AE  E
Sbjct: 61 QEAEAAE 67

The following BLAST results are available for this feature:

BLAST of Lcy08g017540 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g017540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPB3	2.6e-30	95.77	uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1G367	1.2e-27	90.14	uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]
A0A6J1KGB8	7.7e-27	90.14	uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644...	[more]
A0A2I4ESM8	9.4e-25	85.51	uncharacterized protein LOC108992325 OS=Juglans regia OX=51240 GN=LOC108992325 P...	[more]
A0A067F7J7	8.0e-24	81.69	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0303881...	[more]

BLAST of Lcy08g017540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143125.1	5.3e-30	95.77	uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha...	[more]
XP_038890309.1	1.9e-27	90.14	uncharacterized protein LOC120079925 [Benincasa hispida] >XP_038890310.1 unchara...	[more]
XP_022946219.1	2.5e-27	90.14	uncharacterized protein LOC111450371 [Cucurbita moschata]	[more]
XP_023547264.1	9.3e-27	90.14	uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo]	[more]
KAG7030387.1	1.2e-26	88.73	hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lcy08g017540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55125.1	2.2e-26	82.09	Ribosomal protein L31	[more]
AT5G55125.2	2.2e-26	82.09	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37264	RIBOSOMAL PROTEIN L31	coord: 1..69
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g017540.1	Lcy08g017540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome