Lcy08g017440 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g017440
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	thylakoid lumenal 16.5 kDa protein, chloroplastic
Location	Chr08: 48162726 .. 48166764 (+)
RNA-Seq Expression	Lcy08g017440
Synteny	Lcy08g017440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACAGAGATGGCTACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCTTCTTCTTCTTCTTCTTCTCCATTGCTGAGATCAAGATTTGGTTGCCTTCATTGCCATAATAATACTAGAAAACTGGTTATCTGCAAGGCAAATAATGACCCACCATTGCAAATTCCAGCTTTAACCAAGAGAAGCCTTTCAATATGCTTCATTTCCAGTTTCATTTTCCCTCTTGTGGGTCAAGGCTTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAAAAGGTGAAGAAAGATAGAAAGAAGAGGCTCGAAAGGCAAGGGGTTATCAATTCTGCCAATAAAGAAAAAGGTTCCTTATGCATGCTATCTGTTTGTGTTTAGTTCTATGTGAACTCTGAACTTGGAAATTTGATTGAATACTGAATATGGTCTGGTTTTCAATTGGGTCTTTGTAGTTGGTTTGAGTTGATTTGTGTTCATTTCATTTTGAGTTGCGAAATAGTTCCTTCTAGTTATAGCATCTTGTTTTTCTTGCAACTGTAACAATGAAATGTCAGAGCACATAACACAATCTTTTTTTGTGTGGTGATCATTGAGATTGTTTTATGGTTGAGGAGGATTTTGAGATTTAGTAGTTAGGAAAACTCCATGGAAAACTCAATGGAAAACAAGAAAAGGAAACAATGTGAAACAAATTACTTAGTGCTTTCTGTGAATCTAGAACTCCAATTGCAGGAAAAAGAGAATTGAACAATACATAAATGGACTGGAAATGAGAAAAAGAATTGTGGAGAAAAACAAGAAGAATAATCAAGTTTTTAATGAACGTAATCCACCATATACTGATATACATACACACATATAGATAGATTGACTGTGGCCATCCGTAGTGATGGTAGTTATTTTTCCTATTGGTAAATGAAAAGATACATTCAATCATAGAGAGATTTGAAAAGTAATTTATTTATACCCATGAATATCAATATTCTTAGCATAACTTTAAAAGGTATTTGACTAGTTGGTTGTGTTTGTATAGCCTAAGAGTTCTAAAGCCAAGCATATGTGTGCAATGTGGGCATCCTTATCCCCTAGCAGTGTTTTAAAGGGCTCAAGGCGCACTAAGGCGCAATGGCCTCCTGGGGCCTAGGCGCAAGGCGCACAAAAAGGCGCGGACTTTTTTCTTTAAGGCGCGCTATATAGAAAAAAACTTACAAAAATATATACATGTATATAAAACATTTTCATGGCAAGTAATGAAGTTTTTAACCAAGAAAAATAGATAAAAGATAAACAAGGTTCAAATATTAGTCTTCCAACATAGAGTCGAATGTCAATACTCCACAAAAAACAGTGAGTTTAGTATTGTTAATATGCCTTCTGACACTCCGAATGACTAAGTATGATGATGTCAATACTCCACAAAAAACATATGCCTTGAATATGATATTTGACACTCTGAACGACCAAGTACGGGGGTCTTGCTTCATAACAAGTATTTAGGTTTAAAAAAATTTAAAACATATATAAAAATGTGAAGCCCCAGAGGCGCCTAAGGCGCGTGCCTCGGCCGCGCCTTCCTCACTGCGCCTTGTGCCTAGGCGCGTCCGGGCGCGCGCCTTTTAAAACACTGCCCCCTAGGCTGTAGGTTTGTAAACCTAAAGGAAGAAGCGAGGCGCTAAGGGTGCGCCTTGCGCCTAGGAGCGCCCAGGCGCGCGCCTTTTAAAACACTGTCCCCTAGGCTGTAGGTTTGTAAACCTAAAGGCTAATGTGTGCAATGTGGGCTTCCTTATCCCCTAGGTTGTAGGTTTGTAAACCTAAAGGCTAATAAATTAATTTTTCAAACTTACTCTTCAAGGTATGCACTTACTGTTGCTAATTACAAACCCACAAGTCAAACACACGCTATATAAACTCAAGTTTCTATAACGATCCTTCTTTGTGTAATCCAAATACAGGGTATTAAGCTATTCAACCTCATTTGATGATACCTATACTTATTGAAGTAGTGAGTCAAACAATGCTTTAAGAGGTTTAATATGGTCTTGGTTTTGGAAATCATGAGGCTTAATTCTTCATGTGAGTGGATTACAAGTGTTGTTGCAGTCAACTCAATCATAAAGTTCAATATAAGCTACCAGAGTTAAGCTATGAGAATACCTCTAAAACAAGTAGAAACCTTGCCATAAATATAATGATCTGGTCTTTTGCAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTAGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGAGTAGTAGCGATGCAGATTGGGTTCAGAACGCCAATTTAGCCTTCAACAAGGTTAGCATAATATGTATAATCAGGAATCAGGATTGTTTATGTATGACTTTCAGGAAGTTCTGACTTTTGGCTAGAATGTACATTTTATCCCTGAACCTACTATTTCCATGTTGGTTCACAAAGTTCTAAAAGTTTTCGATATACCCTCAAACTTATTTAATTGTTAGTCCCAATGTTTTTGAAAAAAATGATCGAAAACATGACCTGATGTGTTATATTTAGTATACAAATTTGAACAAGTGCGCCTAGACATGATAGCATGGATTCTATATCGCAGTACATGGAAAAGTATGATTTTGTATGAATTTTTCACTTCGATAAATTTTGTGAAAATGATGTAAGTTATCAAAATTGCATTGTAATTAATGTCTTGGTTTTTTTTAAGCACATCAATCAAGCTCAATGTATCACATCATACACTTCATTTTTTGAAACAAAGTAGGACGAAGATCATCTTCTAAAAGAAACAATTCATCAGGAAGACCATCTTTTTAAAAAAAAAAAAAAGAAATTCATTGGTCTAGGATGTTCAAAATTTCAGATTTTAAAGACAAAATTGAAAACAAGCACGTAAGTTAGGGACAAAACATACATTCAAGCCTTAATTGAACTAGTTCATCTTTCTAGCTAGCAACTCATTTGATGCGATATGATGAATGGAATTATCACAACTTAAATAATTGAACTTTAATTGTTTGTCAAATTGTCATGTCGTGAGTAGTTAAATGATTCTTTGAGGAATTTCACTTTTAACTTCTTGAGCAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAGGTGGATACATTCAACTCCTCTCTAGCTTCGTTAATCTCATCAGGTATCTTTTAAGATATTATGAAGTAGCCAAGATAAACAGAATGTAAATTTTTGCACAGGATAGAACTACTGATTCTAAGTATTGTAACATTTTTGCATTGCAGTTACTCAGAATGATGTTGAATCCTCCAAAACTGCTTTTGTAGCATCTGCCACTGCACTTGAGAAATGGACAGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGAGTTGAATGCAACCATCTGTTCTGATCTCATTTATTCTAAGAATGACCTACCGCATTTCATAGGCTCCCCAGCTATTTTCCCTCTCCCAAATCAAGAAGCTGATTTTTCTTTTCATCTTCTGAGTTTCTGGTGTCAATGTTACTGAACTTTGAATCATTGGATAGATTCCATTGGCTAGTTTGAATGTTATTCTTAATGTGTTCAAGAAAACCAATGCATCTTCTGTTTATGAATAAAGTAAAATCTCAGTTCAGTTAGCAACATTCACCAAATACTGGCAGAACTTTAGATCTTTAAAATGGTAATTGACAAAGATCAGGAGTACAAGAAGTATCCAACAGATGCTTTTCCAGTTGATCATGCAGCACTTGATGGTAGGAGATCCTCTTGGATTGTTAGGATAGACTACTTCACCAGTCTAGTCAAAACATCCGATGAGTTTTGACTATTTTGTAATCAGATTTCTTGAATGATTAGTGACTTGACCAACCAGGTCCACTGGATAGGTCCAACTGTAATGCATTCCAGAAGTTGCTACCTCACTTTGTACAAAGCCATAGAAGAAGATGGCAAAATTAACTGATTTGTTTTCCCTTCTTTTGTCTTTA

mRNA sequence

AAAAAAACAGAGATGGCTACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCTTCTTCTTCTTCTTCTTCTCCATTGCTGAGATCAAGATTTGGTTGCCTTCATTGCCATAATAATACTAGAAAACTGGTTATCTGCAAGGCAAATAATGACCCACCATTGCAAATTCCAGCTTTAACCAAGAGAAGCCTTTCAATATGCTTCATTTCCAGTTTCATTTTCCCTCTTGTGGGTCAAGGCTTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAAAAGGTGAAGAAAGATAGAAAGAAGAGGCTCGAAAGGCAAGGGGTTATCAATTCTGCCAATAAAGAAAAAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTAGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGAGTAGTAGCGATGCAGATTGGGTTCAGAACGCCAATTTAGCCTTCAACAAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAGGTGGATACATTCAACTCCTCTCTAGCTTCGTTAATCTCATCAGTTACTCAGAATGATGTTGAATCCTCCAAAACTGCTTTTGTAGCATCTGCCACTGCACTTGAGAAATGGACAGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGAGTTGAATGCAACCATCTGTTCTGATCTCATTTATTCTAAGAATGACCTACCGCATTTCATAGGCTCCCCAGCTATTTTCCCTCTCCCAAATCAAGAAGCTGATTTTTCTTTTCATCTTCTGAGTTTCTGGTGTCAATGTTACTGAACTTTGAATCATTGGATAGATTCCATTGGCTAGTTTGAATGTTATTCTTAATGTGTTCAAGAAAACCAATGCATCTTCTGTTTATGAATAAAGTAAAATCTCAGTTCAGTTAGCAACATTCACCAAATACTGGCAGAACTTTAGATCTTTAAAATGGTAATTGACAAAGATCAGGAGTACAAGAAGTATCCAACAGATGCTTTTCCAGTTGATCATGCAGCACTTGATGGTAGGAGATCCTCTTGGATTGTTAGGATAGACTACTTCACCAGTCTAGTCAAAACATCCGATGAGTTTTGACTATTTTGTAATCAGATTTCTTGAATGATTAGTGACTTGACCAACCAGGTCCACTGGATAGGTCCAACTGTAATGCATTCCAGAAGTTGCTACCTCACTTTGTACAAAGCCATAGAAGAAGATGGCAAAATTAACTGATTTGTTTTCCCTTCTTTTGTCTTTA

Coding sequence (CDS)

ATGGCTACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCTTCTTCTTCTTCTTCTTCTCCATTGCTGAGATCAAGATTTGGTTGCCTTCATTGCCATAATAATACTAGAAAACTGGTTATCTGCAAGGCAAATAATGACCCACCATTGCAAATTCCAGCTTTAACCAAGAGAAGCCTTTCAATATGCTTCATTTCCAGTTTCATTTTCCCTCTTGTGGGTCAAGGCTTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAAGAGCTTTTGGAAAAGGTGAAGAAAGATAGAAAGAAGAGGCTCGAAAGGCAAGGGGTTATCAATTCTGCCAATAAAGAAAAAGGATACCTCCAGGAAGTTGTGTACAAGCTGAGCAAAGTAGGTCAAGCCATTGATAACAATGACTTCTCAACAGCAAGTTCAGTTCTTGGGAGTAGTAGCGATGCAGATTGGGTTCAGAACGCCAATTTAGCCTTCAACAAGCTGAGCTCAAGTCCTGAAGAGAAATCTGAGGTGGATACATTCAACTCCTCTCTAGCTTCGTTAATCTCATCAGTTACTCAGAATGATGTTGAATCCTCCAAAACTGCTTTTGTAGCATCTGCCACTGCACTTGAGAAATGGACAGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGA

Protein sequence

MATSFLSTANTFHSSTPSSSSSSSPLLRSRFGCLHCHNNTRKLVICKANNDPPLQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVINSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSPEEKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL

Homology

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BLAST of Lcy08g017440 vs. ExPASy Swiss-Prot
Match: O22773 (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 199.9 bits (507), Expect = 3.1e-50
Identity = 132/234 (56.41%), Postives = 158/234 (67.52%), Query Frame = 0


Query: 1   MATSFL--STANTFHSSTPSSSSSSSPLLRSRFGCLHCHNNTRKLVICKANNDPPLQIPA 60
           MA S L  ST N F S+T SSS  +           +  N T   ++ K           
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSG-----NSKNQTSSSLLWK----------- 60

Query: 61  LTKRSLSICFISSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
             +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR+ERQ V+
Sbjct: 61  --RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVL 120

Query: 121 NSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSPE 180
           NSA KEKGYLQ++VYKLSKVGQAI+NND   A  VLG   D +WV+  NLAF KLS+SPE
Sbjct: 121 NSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPE 180

Query: 181 EKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           E +EV+ FNSSLASLI+SV +ND+ESSK AFV+SA A EKWT L GL+ QLKGL
Sbjct: 181 ENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

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BLAST of Lcy08g017440 vs. ExPASy TrEMBL
Match: A0A5A7V8J2 (Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00360 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.6e-104
Identity = 209/234 (89.32%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS-----PLLRSRFGCLHCHNNTRKLVICKANNDPPLQ 60
           MATSFLSTANTFHSSTPSSSSSSS     PLLRSRFGCL+CHNNT++LVICK+++DPP +
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
           IPALTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 NSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSPE 180
           +SANKEKGYLQE+VYKLSKVGQAID+NDF+TASSVLG SSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           EKSEVD FNSSLASLISSVT++DVESSKTAFVASA+A EKWTALAGLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

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BLAST of Lcy08g017440 vs. ExPASy TrEMBL
Match: A0A1S3C541 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497128 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.6e-104
Identity = 209/234 (89.32%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS-----PLLRSRFGCLHCHNNTRKLVICKANNDPPLQ 60
           MATSFLSTANTFHSSTPSSSSSSS     PLLRSRFGCL+CHNNT++LVICK+++DPP +
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
           IPALTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 NSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSPE 180
           +SANKEKGYLQE+VYKLSKVGQAID+NDF+TASSVLG SSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           EKSEVD FNSSLASLISSVT++DVESSKTAFVASA+A EKWTALAGLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

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BLAST of Lcy08g017440 vs. ExPASy TrEMBL
Match: A0A6J1G2S1 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450272 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.3e-103
Identity = 212/236 (89.83%), Postives = 219/236 (92.80%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS-------PLLRSRFGCLHCHNNTRKLVICKANNDPP 60
           MATSFLSTANTFHSSTPSSSSSSS       PLLRSRF CL+  NN R+LVICK NNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNYRNNARRLVICKGNNDPP 60

Query: 61  LQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
            QIP LTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VINSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSS 180
           VI+SANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLG S+DADWV+NANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           PEEKSEVD FNSSLASLISSVTQNDV+SSKTAFVA A+ALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVALASALEKWTALAGLVGQLKGL 236

[Close]

BLAST of Lcy08g017440 vs. ExPASy TrEMBL
Match: A0A6J1KEL3 (thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493636 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 7.3e-103
Identity = 209/235 (88.94%), Postives = 221/235 (94.04%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS------PLLRSRFGCLHCHNNTRKLVICKANNDPPL 60
           MATSFLSTANTFHSS+PSSSSSSS      PLLRSRF CL+C NN R+ VICK NNDPP 
Sbjct: 1   MATSFLSTANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDPPS 60

Query: 61  QIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           +IP+LTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV
Sbjct: 61  KIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 INSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSP 180
           I+SANKEKGYLQEVV+KLSKVGQAIDNNDFSTASSVLG S+DADWV+NANLAFNKLS+SP
Sbjct: 121 ISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTSP 180

Query: 181 EEKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           EEKSEVD FNSSLASLISSVTQNDV+SSKTAFVASA+ALEKWTALAGLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of Lcy08g017440 vs. ExPASy TrEMBL
Match: A0A0A0LI29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.2e-102
Identity = 206/238 (86.55%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS---------PLLRSRFGCLHCHNNTRKLVICKANND 60
           MAT+FLSTANTFHSSTPSS SSSS         PL+RSRFGCL+CHNNT++LVICK+++D
Sbjct: 1   MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60

Query: 61  PPLQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLER 120
           PP +IPALTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+
Sbjct: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120

Query: 121 QGVINSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLS 180
           QGVI+SANKEKGYLQE+VYKLSKVGQAIDNNDFSTASSVLG SSDADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180

Query: 181 SSPEEKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           SSPEEKSEVD FNSSLASLISSVT+NDVESSKTAFVASA+A EKWTALAGLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238

[Close]

BLAST of Lcy08g017440 vs. NCBI nr
Match: XP_038889145.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 1.0e-106
Identity = 217/237 (91.56%), Postives = 223/237 (94.09%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS--------PLLRSRFGCLHCHNNTRKLVICKANNDP 60
           MATSFLSTANTFHSSTPSSSSSSS        PLLRSRFGCLHCHNNT++LVICK  NDP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSSPPLLRSRFGCLHCHNNTKRLVICKGINDP 60

Query: 61  PLQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ 120
           P QIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ
Sbjct: 61  PSQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQ 120

Query: 121 GVINSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSS 180
           GVI+SANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLG SSDADWV+NANLAFNKLSS
Sbjct: 121 GVISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVRNANLAFNKLSS 180

Query: 181 SPEEKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           SPEEKSEVD FNSSLASLISSVTQNDVESSKTAFVASA+ALEKWTA+ GLVGQLKGL
Sbjct: 181 SPEEKSEVDAFNSSLASLISSVTQNDVESSKTAFVASASALEKWTAMVGLVGQLKGL 237

[Close]

BLAST of Lcy08g017440 vs. NCBI nr
Match: KAG7030378.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 391.0 bits (1003), Expect = 7.2e-105
Identity = 214/235 (91.06%), Postives = 221/235 (94.04%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTP------SSSSSSSPLLRSRFGCLHCHNNTRKLVICKANNDPPL 60
           MATSFLSTANTFHSSTP      SSSSSSSPLLRSRF CL+C NN R+LVICK NNDPP 
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPLLRSRFSCLNCRNNARRLVICKGNNDPPS 60

Query: 61  QIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120
           QIP LTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV
Sbjct: 61  QIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGV 120

Query: 121 INSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSP 180
           I+SANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLG S+DADWV+NANLAFNKLSSSP
Sbjct: 121 ISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSP 180

Query: 181 EEKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           EEKSEVD FNSSLASLISSVTQNDV+SSKTAFVASA+ALEKWTALAGLVGQLKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 235

[Close]

BLAST of Lcy08g017440 vs. NCBI nr
Match: XP_023545851.1 (thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545852.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545854.1 thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 390.6 bits (1002), Expect = 9.5e-105
Identity = 213/232 (91.81%), Postives = 220/232 (94.83%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS---PLLRSRFGCLHCHNNTRKLVICKANNDPPLQIP 60
           MATSFLSTANTFHSSTPSSSSSSS   PLLRSRF CL+C NN R+LVICK NNDPP QIP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPPSQIP 60

Query: 61  ALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVINS 120
            LTKRSLSICFIS FIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI+S
Sbjct: 61  TLTKRSLSICFISGFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISS 120

Query: 121 ANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSPEEK 180
           ANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLG S+DADWV+NANLAFNKLSSSPEEK
Sbjct: 121 ANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSSPEEK 180

Query: 181 SEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           SEVD FNSSLASLISSVTQNDV+SSKTAFVASA+ALEKWTALAGLVGQLKGL
Sbjct: 181 SEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 232

[Close]

BLAST of Lcy08g017440 vs. NCBI nr
Match: KAG6599393.1 (Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 390.6 bits (1002), Expect = 9.5e-105
Identity = 214/236 (90.68%), Postives = 221/236 (93.64%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS-------PLLRSRFGCLHCHNNTRKLVICKANNDPP 60
           MATSFLSTANTFHSSTPSSSSSSS       PLLRSRF CL+C NN R+LVICK NNDPP
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRLVICKGNNDPP 60

Query: 61  LQIPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120
            QIP LTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG
Sbjct: 61  SQIPTLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQG 120

Query: 121 VINSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSS 180
           VI+SANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLG S+DADWV+NANLAFNKLSSS
Sbjct: 121 VISSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSSS 180

Query: 181 PEEKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           PEEKSEVD FNSSLASLISSVTQNDV+SSKTAFVASA+ALEKWTALAGLVGQLKGL
Sbjct: 181 PEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236

[Close]

BLAST of Lcy08g017440 vs. NCBI nr
Match: XP_008457444.1 (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo] >KAA0063500.1 thylakoid lumenal 16.5 kDa protein [Cucumis melo var. makuwa] >TYJ97826.1 thylakoid lumenal 16.5 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-103
Identity = 209/234 (89.32%), Postives = 225/234 (96.15%), Query Frame = 0


Query: 1   MATSFLSTANTFHSSTPSSSSSSS-----PLLRSRFGCLHCHNNTRKLVICKANNDPPLQ 60
           MATSFLSTANTFHSSTPSSSSSSS     PLLRSRFGCL+CHNNT++LVICK+++DPP +
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPALTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
           IPALTKR+LSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE+QGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 NSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSPE 180
           +SANKEKGYLQE+VYKLSKVGQAID+NDF+TASSVLG SSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           EKSEVD FNSSLASLISSVT++DVESSKTAFVASA+A EKWTALAGLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

[Close]

BLAST of Lcy08g017440 vs. TAIR 10
Match: AT4G02530.1 (chloroplast thylakoid lumen protein )

HSP 1 Score: 199.9 bits (507), Expect = 2.2e-51
Identity = 132/234 (56.41%), Postives = 158/234 (67.52%), Query Frame = 0


Query: 1   MATSFL--STANTFHSSTPSSSSSSSPLLRSRFGCLHCHNNTRKLVICKANNDPPLQIPA 60
           MA S L  ST N F S+T SSS  +           +  N T   ++ K           
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSG-----NSKNQTSSSLLWK----------- 60

Query: 61  LTKRSLSICFISSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVI 120
             +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR+ERQ V+
Sbjct: 61  --RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVL 120

Query: 121 NSANKEKGYLQEVVYKLSKVGQAIDNNDFSTASSVLGSSSDADWVQNANLAFNKLSSSPE 180
           NSA KEKGYLQ++VYKLSKVGQAI+NND   A  VLG   D +WV+  NLAF KLS+SPE
Sbjct: 121 NSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPE 180

Query: 181 EKSEVDTFNSSLASLISSVTQNDVESSKTAFVASATALEKWTALAGLVGQLKGL 230
           E +EV+ FNSSLASLI+SV +ND+ESSK AFV+SA A EKWT L GL+ QLKGL
Sbjct: 181 ENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

The following BLAST results are available for this feature:

BLAST of Lcy08g017440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22773	3.1e-50	56.41	Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Lcy08g017440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8J2	6.6e-104	89.32	Thylakoid lumenal 16.5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C541	6.6e-104	89.32	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1G2S1	4.3e-103	89.83	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KEL3	7.3e-103	88.94	thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN...	[more]
A0A0A0LI29	6.2e-102	86.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006840 PE=4 SV=1	[more]

BLAST of Lcy08g017440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889145.1	1.0e-106	91.56	thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Benincasa hispida]	[more]
KAG7030378.1	7.2e-105	91.06	Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_023545851.1	9.5e-105	91.81	thylakoid lumenal 16.5 kDa protein, chloroplastic isoform X1 [Cucurbita pepo sub...	[more]
KAG6599393.1	9.5e-105	90.68	Thylakoid lumenal 16.5 kDa protein, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_008457444.1	1.4e-103	89.32	PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo] >KAA...	[more]

BLAST of Lcy08g017440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02530.1	2.2e-51	56.41	chloroplast thylakoid lumen protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR038862	Chloroplast thylakoid lumenal protein MPH2	PANTHER	PTHR35742	THYLAKOID LUMENAL 16.5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g017440.1	Lcy08g017440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010206	photosystem II repair