Lcy08g016880 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g016880
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description40S ribosomal protein S11-like
LocationChr08: 47553820 .. 47556499 (+)
RNA-Seq ExpressionLcy08g016880
SyntenyLcy08g016880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAACTCTCTGAAGCAGGTTTAGGGTTTCTGTAATCGAACTCTCCTCCTTCGGCCGCCTGAGCAAACCAGAACTCGTGCTCTCTTCAGAAGCCCTAATCATGGCGGAACAGGTTTCTATCAGATTGGCGGATTTCACTTCTTTGTTCCCTTTAACCCTACTCTGTTTCCGTTTTACTGACATTAGCTCTGAACTTTTCGTTCTTTTTCTGCAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTTTTTCTTTGGTAAACGAATTGAACTATACTTTTCATCATCAAGTTTGACGTATTAGGGTTCATGTTGGTTGAATTGTTGCTGTTAATTGTAATTCAGATTTTATTTGGTTTTTGTGATATGTGTTTGTTTCTCTCTTCGATTTAATTATTGTTATTTTTCGACAACCCAATAGCTCCAAAAAGGTTGGGAAAGGGAAGAGACCTGGAAAGGGCGGGAACCGATTCTGGAAGAGTATTGGATTGGGATTTAAGACGCCAAGGGATGCAATCGAAGGTTCTGTCTTTTAAAACTCTGATTACGTTTTGTTTGTTGGCTTGCCAATATGAATGTGTTTAGTCCTTTTAACTTTCGACTTTGCTTGAGTATTAAATATTGGAGGCCAAGCTTATTTGTTTATTCTGAACTGGTTGTTTTCTTCTATAGAACTTTCACTTTGTACTTCTATCACCGATAAAAAACCATGTACTTCAATCTCATTGGTATTGTATTCTTTGTTGCAATTTATTACTTAATTATTAAATATAACCATGATGAACTTCCTATCAAAAAAAAAAACCATGATGAACTGTAGCTGCACCTTCGTTCCCAAATGATACGCAGTGCTGTAGGAATGCATATCAAAGTGCTATTTATTTGAATGCTGAGAGGATATAACTCTGATGAACATATTGAAAAAACATTAAGAGCTGAAGGGATGGCAATGTTGATGATTTCATCACCTTCTATTAAAAGAATGGGCGATTGTTTCTGCATTGATACCAGGGTACCTATTGATGAATGGTTGAGGTAGTGTAAGGAATCGAGGACTAGTGTTGGATGGAAGGATGAAATTCATAGTTGACTCACAAATCTTTTATGTATAATAGAAAGGCATTATCATGGCATTGTATTTCTCAACAAGAGATTAGGGTTAAATATGAGAATGCTAAAGCCTCCTTACCCTCTTTCTAGGCTTGGGCACTTTTGATCCACAAGGCCTCTTAGGGATGAAATAGGATTTGTTTTGGCTAGAGCGCCCAAATCCCCTATATATTTTACATGGGTTTGCTCTAATGTTGGATAGAGATGGATATGACAAATACATGGTGACATTTAATTTTAAAAAAAATCTAGGACATGGACATGTTTGTTGAAATATTTATGATTTATATAGAAGAAAGAAAATTCAATGTCAATGAATTTATGCATTTACATGCTTCAAAAAATAAATTTGATGCATTAACATGGGTTCGATAATGTCTAACAAATGTTAAAATCATATTCACTTTGTACAACTAGTGCTTAACACATGTCTACTATCATACTAACAAGCGTACAATATATGTCCAACAAGTGTTGTACATGTATATGTCACCCAAACTTAAGTGACTGTGTTTCTTAGGTTGTTCTATTGTTTTGTTGGATTTTTTTTTTATTGTCTTTGTTTCTTATAACAAAAGAAAAGAAACAGAAAAATAAAAAGGAATGTTAAATCCTTAAAGCATCCTCATTTATACCATGAACTGCATGCATACTTATCTCTAATTTTTTTAAGGCCTTTAGGTTGTTATCTTGCTCTTATGTTCTTCGAATTGTTGCTGAATACTTGAATGCTGTTTACTGATCGACTATTTCAATTCTGCTGTATTCATGCAGGAACGTACATTGATAAGAAATGCCCCTTCACTGGAACAGTCTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTACCTACATTATGTTAAGAAGTATCAGAGGTACTTTCCCGTACCACCCCACCCCCACCCACACACCACCTGATTTTTCTCTTCGTAATTCTGATGTATTTTGTTCTCTTGTCTATTTAGGTATGAGAAAAGGCACTCCAACATTCCTGCTCACATATCTCCATGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGTACATCGATATATGAAGAATTCTTCCCATTGATCCTTGTTGTGATAGTTTTCTTTTATTATTTTTTTTTAAATGAAAACTTGTTTCACATTTATTGTTCAAATTCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAACTGGGAAGAAGGCTTTTACCGGGATTTAAATTATGTAGGCTTCCGCTTTTGATACAAAACAGCTTGAAAGAACTTTTGAGAGTTGTAGGCCATATTTTGATGCAAGAAGGTTTTGAAGACTTAGCAGTCTGGATTTTGATATGAATATGGACTGTTTTATTCTGTTCTATTTGTTTTGCTTTCTTGTCTTATTTTTAGCAAATTTGGGGTTTTGAAGGTACCAAATTCTCCTGGTTGTCTAATAGGTATTCTAATATATGTCAGTTTTTATAATATAAGATCGTCTTTCCTCCGCCACCGTGTTCC

mRNA sequence

TATAACTCTCTGAAGCAGGTTTAGGGTTTCTGTAATCGAACTCTCCTCCTTCGGCCGCCTGAGCAAACCAGAACTCGTGCTCTCTTCAGAAGCCCTAATCATGGCGGAACAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTTTTTCTTTGCTCCAAAAAGGTTGGGAAAGGGAAGAGACCTGGAAAGGGCGGGAACCGATTCTGGAAGAGTATTGGATTGGGATTTAAGACGCCAAGGGATGCAATCGAAGGAACGTACATTGATAAGAAATGCCCCTTCACTGGAACAGTCTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTACCTACATTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCTGCTCACATATCTCCATGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAACTGGGAAGAAGGCTTTTACCGGGATTTAAATTATGTAGGCTTCCGCTTTTGATACAAAACAGCTTGAAAGAACTTTTGAGAGTTGTAGGCCATATTTTGATGCAAGAAGGTTTTGAAGACTTAGCAGTCTGGATTTTGATATGAATATGGACTGTTTTATTCTGTTCTATTTGTTTTGCTTTCTTGTCTTATTTTTAGCAAATTTGGGGTTTTGAAGGTACCAAATTCTCCTGGTTGTCTAATAGGTATTCTAATATATGTCAGTTTTTATAATATAAGATCGTCTTTCCTCCGCCACCGTGTTCC

Coding sequence (CDS)

ATGGCGGAACAGACCGAGAAGGCGTTTTTGAAGCAACCCAAAGTTTTTCTTTGCTCCAAAAAGGTTGGGAAAGGGAAGAGACCTGGAAAGGGCGGGAACCGATTCTGGAAGAGTATTGGATTGGGATTTAAGACGCCAAGGGATGCAATCGAAGGAACGTACATTGATAAGAAATGCCCCTTCACTGGAACAGTCTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTACCTACATTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAACATTCCTGCTCACATATCTCCATGCTTTCGTGTGAAGGAGGGAGATCATGTTATTATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTTCAATGTGTTGAAGGTCATTCCTGCTGGATCCTCAACTGGGAAGAAGGCTTTTACCGGGATTTAA

Protein sequence

MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFTGI
Homology
[Close]
BLAST of Lcy08g016880 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.2e-82
Identity = 148/159 (93.08%), Postives = 153/159 (96.23%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRFWKSIGLGFKTPR+AI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTG-KKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS G KKAFT I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]
BLAST of Lcy08g016880 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 301.6 bits (771), Expect = 5.2e-81
Identity = 147/159 (92.45%), Postives = 153/159 (96.23%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL +KK GKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHISP FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTG-KKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+G KKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]
BLAST of Lcy08g016880 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-80
Identity = 144/160 (90.00%), Postives = 154/160 (96.25%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRFWK+IGLGFKTPR+AI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST--GKKAFTGI 159
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS+  GKKAFTG+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of Lcy08g016880 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.2e-80
Identity = 146/157 (92.99%), Postives = 152/157 (96.82%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGK+PGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGS-STGKKAFT 157
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS + GKKAFT
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFT 157

[Close]
BLAST of Lcy08g016880 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 297.7 bits (761), Expect = 7.5e-80
Identity = 144/159 (90.57%), Postives = 151/159 (94.97%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK  GKGKRPGKGGNRFWK+IGLGFKTPR+AI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of Lcy08g016880 vs. ExPASy TrEMBL
Match: A0A6J1FBR2 (40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111443978 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 6.8e-84
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRF+KSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158

[Close]
BLAST of Lcy08g016880 vs. ExPASy TrEMBL
Match: A0A6J1HN55 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111465711 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRF+KSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKLGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158

[Close]
BLAST of Lcy08g016880 vs. ExPASy TrEMBL
Match: A0A6J1HZI1 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.2e-82
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAG-SSTGKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG SS+GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]
BLAST of Lcy08g016880 vs. ExPASy TrEMBL
Match: A0A6J1GJT3 (40S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.2e-82
Identity = 153/159 (96.23%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAG-SSTGKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG SS+GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]
BLAST of Lcy08g016880 vs. ExPASy TrEMBL
Match: A0A6J1HEQ3 (40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 4.9e-82
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

[Close]
BLAST of Lcy08g016880 vs. NCBI nr
Match: XP_022937629.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_023536745.1 40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo] >KAG7021195.1 40S ribosomal protein S11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 319.7 bits (818), Expect = 1.4e-83
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRF+KSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKIGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158

[Close]
BLAST of Lcy08g016880 vs. NCBI nr
Match: XP_022965991.1 (40S ribosomal protein S11-like [Cucurbita maxima])

HSP 1 Score: 318.9 bits (816), Expect = 2.4e-83
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK+GKGKRPGKGGNRF+KSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKLGKGKRPGKGGNRFYKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGKKAFAGI 158

[Close]
BLAST of Lcy08g016880 vs. NCBI nr
Match: XP_038887258.1 (40S ribosomal protein S11-like [Benincasa hispida])

HSP 1 Score: 317.4 bits (812), Expect = 7.0e-83
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKAGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+ GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of Lcy08g016880 vs. NCBI nr
Match: XP_023554629.1 (40S ribosomal protein S11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.2 bits (809), Expect = 1.6e-82
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPR+A+EGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPREAVEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAG-SSTGKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG SS+GKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFTGI 159

[Close]
BLAST of Lcy08g016880 vs. NCBI nr
Match: KAF7817275.1 (40S ribosomal protein S11 [Senna tora])

HSP 1 Score: 315.5 bits (807), Expect = 2.7e-82
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLCSKK GKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMTRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTG-KKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+G KKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGVKKAFTGI 159

[Close]
BLAST of Lcy08g016880 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 300.4 bits (768), Expect = 8.3e-82
Identity = 144/160 (90.00%), Postives = 154/160 (96.25%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRFWK+IGLGFKTPR+AI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST--GKKAFTGI 159
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS+  GKKAFTG+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of Lcy08g016880 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 297.7 bits (761), Expect = 5.4e-81
Identity = 144/159 (90.57%), Postives = 151/159 (94.97%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SK  GKGKRPGKGGNRFWK+IGLGFKTPR+AI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFTGI 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of Lcy08g016880 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 295.4 bits (755), Expect = 2.7e-80
Identity = 143/159 (89.94%), Postives = 153/159 (96.23%), Query Frame = 0 

Query: 1   MAEQTEKAFLKQPKVFLCSKKVGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL SKK GKGKRPGKGGNRFWK+IGLGFKTPR+AIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSST-GKKAFTGI 159
           GD V IGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFTG+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:
BLAST of Lcy08g016880 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M5M16.2e-8293.0840S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1[more]
P170935.2e-8192.4540S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2[more]
P161811.2e-8090.0040S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1[more]
P254601.2e-8092.9940S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1[more]
P427337.5e-8090.5740S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2[more]
BLAST of Lcy08g016880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FBR26.8e-8497.4740S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111443978 PE=... [more]
A0A6J1HN551.2e-8397.4740S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111465711 PE=3 ... [more]
A0A6J1HZI12.2e-8296.2340S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 ... [more]
A0A6J1GJT32.2e-8296.2340S ribosomal protein S11-like OS=Cucurbita moschata OX=3662 GN=LOC111454930 PE=... [more]
A0A6J1HEQ34.9e-8296.8640S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=... [more]
BLAST of Lcy08g016880 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937629.11.4e-8397.4740S ribosomal protein S11-like [Cucurbita moschata] >XP_023536745.1 40S ribosoma... [more]
XP_022965991.12.4e-8397.4740S ribosomal protein S11-like [Cucurbita maxima][more]
XP_038887258.17.0e-8397.4840S ribosomal protein S11-like [Benincasa hispida][more]
XP_023554629.11.6e-8296.8640S ribosomal protein S11-like [Cucurbita pepo subsp. pepo][more]
KAF7817275.12.7e-8296.8640S ribosomal protein S11 [Senna tora][more]
BLAST of Lcy08g016880 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G48930.18.3e-8290.00Nucleic acid-binding, OB-fold-like protein [more]
AT5G23740.15.4e-8190.57ribosomal protein S11-beta [more]
AT4G30800.12.7e-8089.94Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 121..131
score: 60.91
coord: 88..111
score: 37.33
coord: 131..138
score: 73.25
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 74..142
e-value: 7.0E-26
score: 90.2
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..158
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 4..72
e-value: 5.6E-31
score: 106.8
IPR028333Ribosomal protein S17, archaeal/eukaryoticTIGRFAMTIGR03630TIGR03630coord: 55..143
e-value: 7.2E-34
score: 113.8
NoneNo IPR availableGENE3D2.40.50.1000coord: 1..157
e-value: 5.2E-83
score: 278.7
NoneNo IPR availablePANTHERPTHR10744:SF2440S RIBOSOMAL PROTEIN S11-1-RELATEDcoord: 1..158
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 121..133
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 68..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g016880.1Lcy08g016880.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome