Lcy08g015960 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g015960
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Rubredoxin
Location	Chr08: 46493231 .. 46494969 (-)
RNA-Seq Expression	Lcy08g015960
Synteny	Lcy08g015960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCCACCACACCTTATCCTCCTCCTTCTCCTCCTCCCACACAGAAACAAAACACAACCAGCATATACCCTTTCCCATTCCATGGATCCTTCTGATTCTTCCTCCTTTTGAAACTTCCCCTTCTCTTTCAAACTCACACAAAATTCAAAACCCATCTCAGATTTCATTTCAATTCTAACACACTCTCCATTTCCATCCATGGCTGCTTATTCCTCTGCAAGACCCACTCTCTCTTTCCATCTCTCCCAACCTTCCCTTCCAATTCCCAGATTCAACTTCAAACCCCCCTCCGCCGCCGTCTCCGCCGCCGTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCAACTCCATTTTCACCCTCAACTCCATCGACGTCTCTAAAGAAGACAAACCCACTTCTGACGACTCAAGTCCTCCTCCTCCTCCGCCGGCGGAGGCGGCGGTTGCGGCGGAGGAGACGGAGGAGAAGTTCGACAAGCGACGGCTGGAGGAGAAATTTGCAGTGCTGAACACTGGGATTTATGAGTGCAGGTCATGTGGGCATAAGTTCGACGAGGCGGTGGGGGATCCGTCGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCAGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGGAACACTTTGACTTCTGGGCAGAAGGCTGTTCTTATATATGGAAGCTTGTTGTTCTTCTTTGCTCTGTTCCTCTCTGGCTATTTCTTGCAATGAGATCGATGATCAATCAGGTAACAAACTCAAAACCTCCTTGCTTTTTGCTTTTTTGGGTTAAATTACAATTATGATTCTGTATTTTAAGGATTGTGTCACTTAATCTTTTATACTTAAAATGTTTCGGATTTTGAATTGTACTTGTCTTCAGTCAACATGAAGAGTTAAGAGTTAGAACTAGAATTGAGAGGTTAACTGGATAGGTAATCGAGTCGAGGGGGTAAAATTAAGGGTAGACTGCAATTGTTAATATGTGGAATTTTTTTTTATTTTTTTATTTTTGGGTTTAAGGCGACAAATTGAGGGATTTGAGCTTCTTAAGCTCTTGGTGATGACATATGTATTAACCAATTAAGTTATGTTTAACTGGACATTAGGAATTACTTTATAAGGAAAAAAAAAACTGAACATTAGGAATTAGAAGGAAGGAGAAACTATTTAGGAATTAAATTTTAAGCAATTTGGTTAAATCTTTTCATGATCCAATATTTATTATAGGAATTAATAATGATGTAACTAAAACTCTTTAAAGTTTAAAGATTAAAGTGACAAATACTTTGCTTCAAAAATAAAATAAAAAAAAAGTGACACAATACTTTAATTCTTAAAAATTGTAATTTTTTATATTTTGTTATATGTATACTTGAAATATATTTCTAATGCATAAAATTGTGGAATTTCAGGTGGATTGAGTAAATTATAAAGGGAGTTTGTGTATTTTGTTTGGTGGACGCCAATTCTTACTGAATTTTTTGTGTTGACAAATCAAAAACAAATAATACTATTGAATTATATATAAAGTTCACTCTCAATCTTCTTGATCTTGGTAAAAAATGCCATGTTTTGAGATCTCTAATTTGTTTTCTTAATAAGATATTCATAATTCATGTTTAATGGTTTATAATAATCCATGATTTTACTCTC

mRNA sequence

CTTCCCCACCACACCTTATCCTCCTCCTTCTCCTCCTCCCACACAGAAACAAAACACAACCAGCATATACCCTTTCCCATTCCATGGATCCTTCTGATTCTTCCTCCTTTTGAAACTTCCCCTTCTCTTTCAAACTCACACAAAATTCAAAACCCATCTCAGATTTCATTTCAATTCTAACACACTCTCCATTTCCATCCATGGCTGCTTATTCCTCTGCAAGACCCACTCTCTCTTTCCATCTCTCCCAACCTTCCCTTCCAATTCCCAGATTCAACTTCAAACCCCCCTCCGCCGCCGTCTCCGCCGCCGTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCAACTCCATTTTCACCCTCAACTCCATCGACGTCTCTAAAGAAGACAAACCCACTTCTGACGACTCAAGTCCTCCTCCTCCTCCGCCGGCGGAGGCGGCGGTTGCGGCGGAGGAGACGGAGGAGAAGTTCGACAAGCGACGGCTGGAGGAGAAATTTGCAGTGCTGAACACTGGGATTTATGAGTGCAGGTCATGTGGGCATAAGTTCGACGAGGCGGTGGGGGATCCGTCGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCAGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGGAACACTTTGACTTCTGGGCAGAAGGCTGTTCTTATATATGGAAGCTTGTTGTTCTTCTTTGCTCTGTTCCTCTCTGGCTATTTCTTGCAATGAGATCGATGATCAATCAGGTGGATTGAGTAAATTATAAAGGGAGTTTGTGTATTTTGTTTGGTGGACGCCAATTCTTACTGAATTTTTTGTGTTGACAAATCAAAAACAAATAATACTATTGAATTATATATAAAGTTCACTCTCAATCTTCTTGATCTTGGTAAAAAATGCCATGTTTTGAGATCTCTAATTTGTTTTCTTAATAAGATATTCATAATTCATGTTTAATGGTTTATAATAATCCATGATTTTACTCTC

Coding sequence (CDS)

ATGGCTGCTTATTCCTCTGCAAGACCCACTCTCTCTTTCCATCTCTCCCAACCTTCCCTTCCAATTCCCAGATTCAACTTCAAACCCCCCTCCGCCGCCGTCTCCGCCGCCGTTCCGCCGTTGCAGAGATCGGCGGCGGCGAGACCCAACTCCATTTTCACCCTCAACTCCATCGACGTCTCTAAAGAAGACAAACCCACTTCTGACGACTCAAGTCCTCCTCCTCCTCCGCCGGCGGAGGCGGCGGTTGCGGCGGAGGAGACGGAGGAGAAGTTCGACAAGCGACGGCTGGAGGAGAAATTTGCAGTGCTGAACACTGGGATTTATGAGTGCAGGTCATGTGGGCATAAGTTCGACGAGGCGGTGGGGGATCCGTCGTATCCGATAGCGCCGGGGCTGCCGTTCGAGCAGCTGCCGGAGGACTGGCGGTGCCCGACGTGTGGGGCGGCGAAGAGCTTCTTTGAGAGTAAGAGTGTGGAGATTGCAGGGTTTGCTCAGAATCAGCAGTATGGACTTGGAGGGAACACTTTGACTTCTGGGCAGAAGGCTGTTCTTATATATGGAAGCTTGTTGTTCTTCTTTGCTCTGTTCCTCTCTGGCTATTTCTTGCAATGA

Protein sequence

MAAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSIDVSKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGSLLFFFALFLSGYFLQ

Homology

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BLAST of Lcy08g015960 vs. ExPASy Swiss-Prot
Match: P73068 (Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rub PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-19
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 94  KRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSF 153
           +R  E+  A L +  +ECR+CG+ +  + GD    ++PG PFE LP +W+CP CGA +++
Sbjct: 3   ERPPEKTLAELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNY 62

Query: 154 FESKSVEIA--GFAQNQQYGLGGNTLTSGQKAVLIYGSLLFFFALFLSGY 202
           F S     A  GFA+N  YG G N ++ G+K +LI+GSL   F  FLS Y
Sbjct: 63  FISTGETDAPSGFAENLNYGFGFNRMSGGKKNLLIFGSLFVIFLFFLSLY 112

[Close]

BLAST of Lcy08g015960 vs. ExPASy Swiss-Prot
Match: Q9XBL8 (Rubredoxin OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rub PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 8.1e-18
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 102 AVLNTGI--YECRSCGHKFDEAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--K 161
           AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGP 64

Query: 162 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGSLLFFFALFLSGYFLQ 205
           +   +GF +N  YGLG N LT  QK +LI+G+L   F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

[Close]

BLAST of Lcy08g015960 vs. ExPASy Swiss-Prot
Match: Q9WWN1 (Rubredoxin OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rub PE=3 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.4e-17
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 102 AVLNTGI--YECRSCGHKFDEAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFES--K 161
           AV NT +  +ECRSCG+ ++   GD  + IAP  PF +LP +WRCP C A K+ F +   
Sbjct: 5   AVENTVLDRFECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGP 64

Query: 162 SVEIAGFAQNQQYGLGGNTLTSGQKAVLIYGSLLFFFALFLSGYFLQ 205
           +   +GF +N  YGLG N LT  QK +LI+G+L   F  F+S Y LQ
Sbjct: 65  AGTASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFFISLYGLQ 111

[Close]

BLAST of Lcy08g015960 vs. ExPASy Swiss-Prot
Match: P00270 (Rubredoxin OS=Desulfovibrio gigas OX=879 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-11
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 108 IYECRSCGHKFDEAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESK 158
           IY C  CG+++D A GDP   I PG  FE LP+DW CP CGA+K  FE +
Sbjct: 3   IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52

[Close]

BLAST of Lcy08g015960 vs. ExPASy Swiss-Prot
Match: Q9FDN6 (High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073 / JCM 9320) OX=264732 GN=hrb PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 32/69 (46.38%), Postives = 40/69 (57.97%), Query Frame = 0


Query: 87  ETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDEAVGDPSYPIAPGLPFEQLPEDWRCPT 146
           +T   F   R ++K A L +  Y+C  C + +D   GDP + IAPG PF  LPEDW CP 
Sbjct: 160 KTAPTFTVGREKDKTA-LASPKYQCTICNYVYDPVQGDPEHGIAPGTPFADLPEDWTCPI 219

Query: 147 CGAAKSFFE 156
           CGA K  FE
Sbjct: 220 CGAGKDAFE 227

[Close]

BLAST of Lcy08g015960 vs. ExPASy TrEMBL
Match: A0A1S4E0U3 (uncharacterized protein LOC103499548 OS=Cucumis melo OX=3656 GN=LOC103499548 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.2e-94
Identity = 181/204 (88.73%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSIDV 60
           MA YSSARPTLSFHLSQPSLPIPRFNFKPP   V+A +PPLQR +AARP SIFTLNSIDV
Sbjct: 79  MAVYSSARPTLSFHLSQPSLPIPRFNFKPP---VAATIPPLQRLSAARPISIFTLNSIDV 138

Query: 61  SKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDE 120
           SKEDKPTSDD + P PPP    VA E+ EEKFDKRRLEE+FAVLNTGIYECRSCGHKFDE
Sbjct: 139 SKEDKPTSDDPNTPSPPP---VVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDE 198

Query: 121 AVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180
           AVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG
Sbjct: 199 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 258

Query: 181 QKAVLIYGSLLFFFALFLSGYFLQ 205
           QKAVLIYGSLLFFFALFLSGYFLQ
Sbjct: 259 QKAVLIYGSLLFFFALFLSGYFLQ 276

[Close]

BLAST of Lcy08g015960 vs. ExPASy TrEMBL
Match: A0A5A7VDM5 (Rubredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001210 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.2e-94
Identity = 181/204 (88.73%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSIDV 60
           MA YSSARPTLSFHLSQPSLPIPRFNFKPP   V+A +PPLQR +AARP SIFTLNSIDV
Sbjct: 1   MAVYSSARPTLSFHLSQPSLPIPRFNFKPP---VAATIPPLQRLSAARPISIFTLNSIDV 60

Query: 61  SKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDE 120
           SKEDKPTSDD + P PPP    VA E+ EEKFDKRRLEE+FAVLNTGIYECRSCGHKFDE
Sbjct: 61  SKEDKPTSDDPNTPSPPP---VVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDE 120

Query: 121 AVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180
           AVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG
Sbjct: 121 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180

Query: 181 QKAVLIYGSLLFFFALFLSGYFLQ 205
           QKAVLIYGSLLFFFALFLSGYFLQ
Sbjct: 181 QKAVLIYGSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Lcy08g015960 vs. ExPASy TrEMBL
Match: E5GBR8 (Rubredoxin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.2e-94
Identity = 181/204 (88.73%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSIDV 60
           MA YSSARPTLSFHLSQPSLPIPRFNFKPP   V+A +PPLQR +AARP SIFTLNSIDV
Sbjct: 1   MAVYSSARPTLSFHLSQPSLPIPRFNFKPP---VAATIPPLQRLSAARPISIFTLNSIDV 60

Query: 61  SKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDE 120
           SKEDKPTSDD + P PPP    VA E+ EEKFDKRRLEE+FAVLNTGIYECRSCGHKFDE
Sbjct: 61  SKEDKPTSDDPNTPSPPP---VVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDE 120

Query: 121 AVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180
           AVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG
Sbjct: 121 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180

Query: 181 QKAVLIYGSLLFFFALFLSGYFLQ 205
           QKAVLIYGSLLFFFALFLSGYFLQ
Sbjct: 181 QKAVLIYGSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Lcy08g015960 vs. ExPASy TrEMBL
Match: A0A0A0LJE4 (Rubredoxin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G012140 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.8e-92
Identity = 182/205 (88.78%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MAAYSSARP-TLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSID 60
           MA YSSARP TLSFHLSQPSLPIPRFNFKPP  A +AA+PPL RS+AARP SIFTLNSID
Sbjct: 1   MAVYSSARPTTLSFHLSQPSLPIPRFNFKPPIPA-TAAIPPLLRSSAARPISIFTLNSID 60

Query: 61  VSKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFD 120
           VSKEDKPTSDD + P P P    VA EE EEKFDKRRLEEKFAVLNTGIYECRSCGHKFD
Sbjct: 61  VSKEDKPTSDDPNTPVPLP---VVAVEEEEEKFDKRRLEEKFAVLNTGIYECRSCGHKFD 120

Query: 121 EAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS 180
           EAVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS
Sbjct: 121 EAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS 180

Query: 181 GQKAVLIYGSLLFFFALFLSGYFLQ 205
           GQKAVLIYGSL FFFALFLSGYFLQ
Sbjct: 181 GQKAVLIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Lcy08g015960 vs. ExPASy TrEMBL
Match: A0A6J1G4B1 (uncharacterized protein LOC111450624 OS=Cucurbita moschata OX=3662 GN=LOC111450624 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.5e-87
Identity = 173/206 (83.98%), Postives = 179/206 (86.89%), Query Frame = 0


Query: 2   AAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSIDVS 61
           AAY+SARPTLSFHLSQPS+P PRFNFKPP      A PPLQRSAAARP  IFTLNSIDVS
Sbjct: 4   AAYASARPTLSFHLSQPSVPSPRFNFKPP----LVAFPPLQRSAAARPIPIFTLNSIDVS 63

Query: 62  KEDKPTSDDSSPPPPPPAEAAVAAEE---TEEKFDKRRLEEKFAVLNTGIYECRSCGHKF 121
           KEDKPTSDD       P  AAV  EE    EEK D+RR+EEKFAVLNTGIYECRSCGHKF
Sbjct: 64  KEDKPTSDD-------PDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKF 123

Query: 122 DEAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLT 181
           DEAVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLT
Sbjct: 124 DEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLT 183

Query: 182 SGQKAVLIYGSLLFFFALFLSGYFLQ 205
           SGQKAVLIYG+L FFFALFLSGYFLQ
Sbjct: 184 SGQKAVLIYGTLFFFFALFLSGYFLQ 198

[Close]

BLAST of Lcy08g015960 vs. NCBI nr
Match: XP_038891199.1 (rubredoxin [Benincasa hispida])

HSP 1 Score: 360.1 bits (923), Expect = 1.2e-95
Identity = 186/209 (89.00%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSA-----AVPPLQRSAAARPNSIFTL 60
           MAAYSSARPTLSFHLSQPSLPIPRFNFKPP++A +A     AVPPLQRSAAARPNSIFTL
Sbjct: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPASASAAAATVPAVPPLQRSAAARPNSIFTL 60

Query: 61  NSIDVSKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCG 120
           NSIDVSKEDKPTSDD + P PPP    V A + EEKFDKRRLEEKFAVLNTGIYECRSCG
Sbjct: 61  NSIDVSKEDKPTSDDPNTPSPPP----VVAVDEEEKFDKRRLEEKFAVLNTGIYECRSCG 120

Query: 121 HKFDEAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN 180
           HKFDEAVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN
Sbjct: 121 HKFDEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGN 180

Query: 181 TLTSGQKAVLIYGSLLFFFALFLSGYFLQ 205
           TLTSGQKAVLIYGSL FFFALFLSGYFLQ
Sbjct: 181 TLTSGQKAVLIYGSLFFFFALFLSGYFLQ 205

[Close]

BLAST of Lcy08g015960 vs. NCBI nr
Match: ADN33910.1 (rubredoxin [Cucumis melo subsp. melo] >KAA0063629.1 rubredoxin [Cucumis melo var. makuwa] >TYK18397.1 rubredoxin [Cucumis melo var. makuwa])

HSP 1 Score: 354.0 bits (907), Expect = 8.7e-94
Identity = 181/204 (88.73%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSIDV 60
           MA YSSARPTLSFHLSQPSLPIPRFNFKPP   V+A +PPLQR +AARP SIFTLNSIDV
Sbjct: 1   MAVYSSARPTLSFHLSQPSLPIPRFNFKPP---VAATIPPLQRLSAARPISIFTLNSIDV 60

Query: 61  SKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDE 120
           SKEDKPTSDD + P PPP    VA E+ EEKFDKRRLEE+FAVLNTGIYECRSCGHKFDE
Sbjct: 61  SKEDKPTSDDPNTPSPPP---VVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDE 120

Query: 121 AVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180
           AVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG
Sbjct: 121 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180

Query: 181 QKAVLIYGSLLFFFALFLSGYFLQ 205
           QKAVLIYGSLLFFFALFLSGYFLQ
Sbjct: 181 QKAVLIYGSLLFFFALFLSGYFLQ 198

[Close]

BLAST of Lcy08g015960 vs. NCBI nr
Match: XP_016901839.1 (PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo] >XP_016901842.1 PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 8.7e-94
Identity = 181/204 (88.73%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MAAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSIDV 60
           MA YSSARPTLSFHLSQPSLPIPRFNFKPP   V+A +PPLQR +AARP SIFTLNSIDV
Sbjct: 79  MAVYSSARPTLSFHLSQPSLPIPRFNFKPP---VAATIPPLQRLSAARPISIFTLNSIDV 138

Query: 61  SKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFDE 120
           SKEDKPTSDD + P PPP    VA E+ EEKFDKRRLEE+FAVLNTGIYECRSCGHKFDE
Sbjct: 139 SKEDKPTSDDPNTPSPPP---VVAVEKEEEKFDKRRLEERFAVLNTGIYECRSCGHKFDE 198

Query: 121 AVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 180
           AVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG
Sbjct: 199 AVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTSG 258

Query: 181 QKAVLIYGSLLFFFALFLSGYFLQ 205
           QKAVLIYGSLLFFFALFLSGYFLQ
Sbjct: 259 QKAVLIYGSLLFFFALFLSGYFLQ 276

[Close]

BLAST of Lcy08g015960 vs. NCBI nr
Match: XP_004139218.2 (uncharacterized protein LOC101219075 [Cucumis sativus] >XP_011648770.1 uncharacterized protein LOC101219075 [Cucumis sativus] >XP_011648771.1 uncharacterized protein LOC101219075 [Cucumis sativus] >KGN60832.1 hypothetical protein Csa_019394 [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 1.8e-91
Identity = 182/205 (88.78%), Postives = 187/205 (91.22%), Query Frame = 0


Query: 1   MAAYSSARP-TLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSID 60
           MA YSSARP TLSFHLSQPSLPIPRFNFKPP  A +AA+PPL RS+AARP SIFTLNSID
Sbjct: 1   MAVYSSARPTTLSFHLSQPSLPIPRFNFKPPIPA-TAAIPPLLRSSAARPISIFTLNSID 60

Query: 61  VSKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFD 120
           VSKEDKPTSDD + P P P    VA EE EEKFDKRRLEEKFAVLNTGIYECRSCGHKFD
Sbjct: 61  VSKEDKPTSDDPNTPVPLP---VVAVEEEEEKFDKRRLEEKFAVLNTGIYECRSCGHKFD 120

Query: 121 EAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS 180
           EAVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS
Sbjct: 121 EAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS 180

Query: 181 GQKAVLIYGSLLFFFALFLSGYFLQ 205
           GQKAVLIYGSL FFFALFLSGYFLQ
Sbjct: 181 GQKAVLIYGSLFFFFALFLSGYFLQ 201

[Close]

BLAST of Lcy08g015960 vs. NCBI nr
Match: XP_022946609.1 (uncharacterized protein LOC111450624 [Cucurbita moschata] >KAG7030288.1 rub, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.7 bits (844), Expect = 1.8e-86
Identity = 173/206 (83.98%), Postives = 179/206 (86.89%), Query Frame = 0


Query: 2   AAYSSARPTLSFHLSQPSLPIPRFNFKPPSAAVSAAVPPLQRSAAARPNSIFTLNSIDVS 61
           AAY+SARPTLSFHLSQPS+P PRFNFKPP      A PPLQRSAAARP  IFTLNSIDVS
Sbjct: 4   AAYASARPTLSFHLSQPSVPSPRFNFKPP----LVAFPPLQRSAAARPIPIFTLNSIDVS 63

Query: 62  KEDKPTSDDSSPPPPPPAEAAVAAEE---TEEKFDKRRLEEKFAVLNTGIYECRSCGHKF 121
           KEDKPTSDD       P  AAV  EE    EEK D+RR+EEKFAVLNTGIYECRSCGHKF
Sbjct: 64  KEDKPTSDD-------PDFAAVVGEEAAAAEEKLDRRRMEEKFAVLNTGIYECRSCGHKF 123

Query: 122 DEAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLT 181
           DEAVGDP+YPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLT
Sbjct: 124 DEAVGDPTYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLT 183

Query: 182 SGQKAVLIYGSLLFFFALFLSGYFLQ 205
           SGQKAVLIYG+L FFFALFLSGYFLQ
Sbjct: 184 SGQKAVLIYGTLFFFFALFLSGYFLQ 198

[Close]

BLAST of Lcy08g015960 vs. TAIR 10
Match: AT1G54500.1 (Rubredoxin-like superfamily protein )

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-52
Identity = 101/145 (69.66%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 60  VSKEDKPTSDDSSPPPPPPAEAAVAAEETEEKFDKRRLEEKFAVLNTGIYECRSCGHKFD 119
           VS++D  T   SS             +E E+  +KRR+EEKFAVLNTGIYECRSCG+K+D
Sbjct: 56  VSRDDAATPLSSS-----DQTQETETKEVEDTIEKRRMEEKFAVLNTGIYECRSCGYKYD 115

Query: 120 EAVGDPSYPIAPGLPFEQLPEDWRCPTCGAAKSFFESKSVEIAGFAQNQQYGLGGNTLTS 179
           E+ GDPSYPI PG  F++LPEDWRCPTCGAA+SFFESK VEIAGFAQNQQYGLGGN LTS
Sbjct: 116 ESAGDPSYPIPPGFQFDKLPEDWRCPTCGAAQSFFESKMVEIAGFAQNQQYGLGGNALTS 175

Query: 180 GQKAVLIYGSLLFFFALFLSGYFLQ 205
           GQK  LI+GSLL FFALFLSGYF+Q
Sbjct: 176 GQKTGLIFGSLLLFFALFLSGYFIQ 195

The following BLAST results are available for this feature:

BLAST of Lcy08g015960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P73068	7.3e-19	42.73	Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rub PE=...	[more]
Q9XBL8	8.1e-18	45.79	Rubredoxin OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=...	[more]
Q9WWN1	1.4e-17	45.79	Rubredoxin OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=...	[more]
P00270	7.4e-11	54.00	Rubredoxin OS=Desulfovibrio gigas OX=879 PE=1 SV=1	[more]
Q9FDN6	1.3e-10	46.38	High molecular weight rubredoxin OS=Moorella thermoacetica (strain ATCC 39073 / ...	[more]

BLAST of Lcy08g015960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0U3	4.2e-94	88.73	uncharacterized protein LOC103499548 OS=Cucumis melo OX=3656 GN=LOC103499548 PE=...	[more]
A0A5A7VDM5	4.2e-94	88.73	Rubredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001210 PE...	[more]
E5GBR8	4.2e-94	88.73	Rubredoxin OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0LJE4	8.8e-92	88.78	Rubredoxin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G01...	[more]
A0A6J1G4B1	8.5e-87	83.98	uncharacterized protein LOC111450624 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]

BLAST of Lcy08g015960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891199.1	1.2e-95	89.00	rubredoxin [Benincasa hispida]	[more]
ADN33910.1	8.7e-94	88.73	rubredoxin [Cucumis melo subsp. melo] >KAA0063629.1 rubredoxin [Cucumis melo var...	[more]
XP_016901839.1	8.7e-94	88.73	PREDICTED: uncharacterized protein LOC103499548 [Cucumis melo] >XP_016901842.1 P...	[more]
XP_004139218.2	1.8e-91	88.78	uncharacterized protein LOC101219075 [Cucumis sativus] >XP_011648770.1 uncharact...	[more]
XP_022946609.1	1.8e-86	83.98	uncharacterized protein LOC111450624 [Cucurbita moschata] >KAG7030288.1 rub, par...	[more]

BLAST of Lcy08g015960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54500.1	1.8e-52	69.66	Rubredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024935	Rubredoxin domain	PRINTS	PR00163	RUBREDOXIN	coord: 138..154 score: 57.12 coord: 108..124 score: 44.12
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 109..154 e-value: 1.1E-17 score: 63.7
IPR024935	Rubredoxin domain	CDD	cd00730	rubredoxin	coord: 109..155 e-value: 5.36681E-23 score: 85.0502
None	No IPR available	GENE3D	2.20.28.10		coord: 101..156 e-value: 9.0E-22 score: 78.5
None	No IPR available	PIRSR	PIRSR000071-1	PIRSR000071-1	coord: 109..156 e-value: 8.8E-19 score: 65.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..90
None	No IPR available	PANTHER	PTHR47627	RUBREDOXIN	coord: 2..204
None	No IPR available	SUPERFAMILY	57802	Rubredoxin-like	coord: 105..171
IPR018527	Rubredoxin, iron-binding site	PROSITE	PS00202	RUBREDOXIN	coord: 138..148
IPR024934	Rubredoxin-like domain	PROSITE	PS50903	RUBREDOXIN_LIKE	coord: 106..157 score: 13.153681

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g015960.1	Lcy08g015960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043448	alkane catabolic process
biological_process	GO:0022900	electron transport chain
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0046872	metal ion binding