Lcy08g015670 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g015670
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Cysteine/Histidine-rich C1 domain family protein
Location	Chr08: 46109046 .. 46109574 (-)
RNA-Seq Expression	Lcy08g015670
Synteny	Lcy08g015670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAATTTCTCCAACTGTCCAGAATTGCAAAGGCAGACCAGTTGTGACCAAAATAGCAGATGTGAACCAACTAAGGTACTCCCTTAGTTATGAAATCAAGAGTCAGTAGGTTGCTTGTCAACTATGAGTGTTTTTGTCATAGTTCAATATATATGTCGACTGCAACTTCCATATTCATAAATCATGCCTCCACCTTCCTCTTGAAATCCGGAGACACTGTCTTCATCCCCAACATCCTCTTCATCTGAAGTCAGACAGTAGTAGCCTCGGCTGTAACGTCTGTGGTCAAATGTCGTCGGGGAGTGATCAGGTTTATGATTGCCGGAAATGCAAATTTAAAGTGGACATCGAATGCGCCATCTCCGACGTAAAAGCCAATGGCAGCAGTTTAAGGCAGATGGGCAATGGGAAGTTTCAACATTTCAGCCACCCGCATCCCCTCAGAACGAAGCCGCCTCGCCACTCCTCAGCCGGCCTGCAAGAAGGAAAGCAGAATTGCGAACGGCCACGCCATGGACGCCGATAA

mRNA sequence

ATGGACAATTTCTCCAACTGTCCAGAATTGCAAAGGCAGACCAGTTGTGACCAAAATAGCAGATGTGAACCAACTAAGTTCAATATATATGTCGACTGCAACTTCCATATTCATAAATCATGCCTCCACCTTCCTCTTGAAATCCGGAGACACTGTCTTCATCCCCAACATCCTCTTCATCTGAAGTCAGACAGTAGTAGCCTCGGCTGTAACGTCTGTGGTCAAATGTCGTCGGGGAGTGATCAGGTTTATGATTGCCGGAAATGCAAATTTAAAGTGGACATCGAATGCGCCATCTCCGACGTAAAAGCCAATGGCAGCAGTTTAAGGCAGATGGGCAATGGGAAGTTTCAACATTTCAGCCACCCGCATCCCCTCAGAACGAAGCCGCCTCGCCACTCCTCAGCCGGCCTGCAAGAAGGAAAGCAGAATTGCGAACGGCCACGCCATGGACGCCGATAA

Coding sequence (CDS)

ATGGACAATTTCTCCAACTGTCCAGAATTGCAAAGGCAGACCAGTTGTGACCAAAATAGCAGATGTGAACCAACTAAGTTCAATATATATGTCGACTGCAACTTCCATATTCATAAATCATGCCTCCACCTTCCTCTTGAAATCCGGAGACACTGTCTTCATCCCCAACATCCTCTTCATCTGAAGTCAGACAGTAGTAGCCTCGGCTGTAACGTCTGTGGTCAAATGTCGTCGGGGAGTGATCAGGTTTATGATTGCCGGAAATGCAAATTTAAAGTGGACATCGAATGCGCCATCTCCGACGTAAAAGCCAATGGCAGCAGTTTAAGGCAGATGGGCAATGGGAAGTTTCAACATTTCAGCCACCCGCATCCCCTCAGAACGAAGCCGCCTCGCCACTCCTCAGCCGGCCTGCAAGAAGGAAAGCAGAATTGCGAACGGCCACGCCATGGACGCCGATAA

Protein sequence

MDNFSNCPELQRQTSCDQNSRCEPTKFNIYVDCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCGQMSSGSDQVYDCRKCKFKVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPLRTKPPRHSSAGLQEGKQNCERPRHGRR

Homology

[Close]

BLAST of Lcy08g015670 vs. ExPASy TrEMBL
Match: A0A5A7TIW3 (Putative Cysteine/Histidine-rich C1 domain family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00610 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 20  SRC----EPTKFNIY-VDCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCG 79
           SRC     P  F  +  DCNFHIH+SCLHLP +I     HP HPL LK  +++  C VC 
Sbjct: 31  SRCRQPLRPPAFTCFNFDCNFHIHQSCLHLPPQIHSP-FHPFHPLLLK--TNNYFCTVCW 90

Query: 80  QMSSGSDQVYDCRKCKFKVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           QM SG   VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 91  QMPSG--DVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]

BLAST of Lcy08g015670 vs. ExPASy TrEMBL
Match: A0A0A0LDB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859620 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 32  DCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCGQMSSGSDQVYDCRKCKF 91
           DCNFHIH+SCLHLP +I     HP HPL L  ++++  C VC QM SG   VY CRKC F
Sbjct: 48  DCNFHIHQSCLHLPPQIHSP-FHPLHPLFL--ETNNYFCTVCWQMPSG--DVYRCRKCNF 107

Query: 92  KVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           ++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 108 QIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]

BLAST of Lcy08g015670 vs. ExPASy TrEMBL
Match: A0A1S3CT35 (uncharacterized protein LOC103504031 OS=Cucumis melo OX=3656 GN=LOC103504031 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-19
Identity = 56/112 (50.00%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 20  SRC----EPTKFNIY-VDCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCG 79
           SRC     P  F  +  DCNFHIH+SCLHLP +I     HP HPL LK  +++  C VC 
Sbjct: 31  SRCRQPLRPPAFTCFNFDCNFHIHQSCLHLPPQIHSP-FHPFHPLLLK--TNNYFCTVCW 90

Query: 80  QMSSGSDQVYDCRKCKFKVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           QM SG   VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPH L
Sbjct: 91  QMPSG--DVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHLL 135

[Close]

BLAST of Lcy08g015670 vs. ExPASy TrEMBL
Match: A0A6J1ID94 (uncharacterized protein LOC111474927 OS=Cucurbita maxima OX=3661 GN=LOC111474927 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.7e-18
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 33  CNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCGQMSSGSDQVYDCRKCKFK 92
           CNFHIH+SC+ LP +I  H  HPQHPL   +++    CN C QM SG   VY CR C F+
Sbjct: 47  CNFHIHQSCIDLPPQIHNH-FHPQHPLSRATNNHI--CNACWQMPSG--DVYLCRSCGFQ 106

Query: 93  VDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           +D++CAI+D KA+G  +RQ  + +F+HFSHPH L
Sbjct: 107 IDVKCAIADTKASG--VRQTSDNEFRHFSHPHTL 133

[Close]

BLAST of Lcy08g015670 vs. ExPASy TrEMBL
Match: A0A6J1F942 (uncharacterized protein LOC111443441 OS=Cucurbita moschata OX=3662 GN=LOC111443441 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 6.3e-18
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 33  CNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCGQMSSGSDQVYDCRKCKFK 92
           CNFHIH+SC+ LP +I  H  HP+HPL   +++    CN C QM SG   VY CR C F+
Sbjct: 114 CNFHIHQSCIDLPPQIHNH-FHPEHPLSRSTNNHI--CNACWQMPSG--DVYLCRSCGFQ 173

Query: 93  VDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           +D++CAI+D KA+G  +RQ  + +F+HFSHPH L
Sbjct: 174 IDVKCAIADTKASG--VRQTSDNEFRHFSHPHTL 200

[Close]

BLAST of Lcy08g015670 vs. NCBI nr
Match: KAA0041587.1 (putative Cysteine/Histidine-rich C1 domain family protein [Cucumis melo var. makuwa] >TYK19669.1 putative Cysteine/Histidine-rich C1 domain family protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 6.3e-20
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 20  SRC----EPTKFNIY-VDCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCG 79
           SRC     P  F  +  DCNFHIH+SCLHLP +I     HP HPL LK  +++  C VC 
Sbjct: 31  SRCRQPLRPPAFTCFNFDCNFHIHQSCLHLPPQIHSP-FHPFHPLLLK--TNNYFCTVCW 90

Query: 80  QMSSGSDQVYDCRKCKFKVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           QM SG   VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 91  QMPSG--DVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]

BLAST of Lcy08g015670 vs. NCBI nr
Match: KGN60121.2 (hypothetical protein Csa_000943 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 32  DCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCGQMSSGSDQVYDCRKCKF 91
           DCNFHIH+SCLHLP +I     HP HPL L  ++++  C VC QM SG   VY CRKC F
Sbjct: 48  DCNFHIHQSCLHLPPQIHSP-FHPLHPLFL--ETNNYFCTVCWQMPSG--DVYRCRKCNF 107

Query: 92  KVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           ++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 108 QIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]

BLAST of Lcy08g015670 vs. NCBI nr
Match: XP_011652423.1 (uncharacterized protein LOC105435021 isoform X1 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 32  DCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCGQMSSGSDQVYDCRKCKF 91
           DCNFHIH+SCLHLP +I     HP HPL L  ++++  C VC QM SG   VY CRKC F
Sbjct: 48  DCNFHIHQSCLHLPPQIHSP-FHPLHPLFL--ETNNYFCTVCWQMPSG--DVYRCRKCNF 107

Query: 92  KVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           ++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 108 QIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]

BLAST of Lcy08g015670 vs. NCBI nr
Match: XP_031738575.1 (uncharacterized protein LOC105435021 isoform X2 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 51/95 (53.68%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 32  DCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCGQMSSGSDQVYDCRKCKF 91
           DCNFHIH+SCLHLP +I     HP HPL L  ++++  C VC QM SG   VY CRKC F
Sbjct: 48  DCNFHIHQSCLHLPPQIHSP-FHPLHPLFL--ETNNYFCTVCWQMPSG--DVYRCRKCNF 107

Query: 92  KVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           ++DI+C ++D K++G  LR++   +F+HFSHPHPL
Sbjct: 108 QIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHPL 135

[Close]

BLAST of Lcy08g015670 vs. NCBI nr
Match: XP_008466678.2 (PREDICTED: uncharacterized protein LOC103504031 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 9.0e-19
Identity = 56/112 (50.00%), Postives = 73/112 (65.18%), Query Frame = 0


Query: 20  SRC----EPTKFNIY-VDCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCG 79
           SRC     P  F  +  DCNFHIH+SCLHLP +I     HP HPL LK  +++  C VC 
Sbjct: 31  SRCRQPLRPPAFTCFNFDCNFHIHQSCLHLPPQIHSP-FHPFHPLLLK--TNNYFCTVCW 90

Query: 80  QMSSGSDQVYDCRKCKFKVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPL 127
           QM SG   VY CRKC F++DI+C ++D K++G  LR++   +F+HFSHPH L
Sbjct: 91  QMPSG--DVYRCRKCNFQIDIKCVLTDTKSSG--LRRISGDQFRHFSHPHLL 135

[Close]

BLAST of Lcy08g015670 vs. TAIR 10
Match: AT2G21840.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-12
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 0


Query: 16  CDQNSRCEPTKFNIYVDCNFHIHKSCLHLPLEIRRHCLHPQHPLHLK-----SDSSSLGC 75
           C+   + EP +F     CNF + K+C  LP ++  H LHP+HPL  +       +  + C
Sbjct: 24  CNICFKDEPVEF-ACDPCNFDLCKACSDLPQKMSHH-LHPEHPLEFRIGEDDQKTKHMVC 83

Query: 76  NVCGQMSSGSDQVYDCRKCKFKVDIECAISDVKANGSSLRQMGNGKFQHFSHPHPLRTKP 135
            VCG MSSG+   Y+C KC+  +D+ CA+    A     ++M      H+SH H L+   
Sbjct: 84  VVCGNMSSGAKYYYECSKCEIYLDLGCALQKNIATSWEAKEM-----LHYSHEHLLKRCR 143

Query: 136 PRHSSAGLQEGKQNCERP 149
           P   S   ++    CE+P
Sbjct: 144 PGPDS---KDSCLLCEQP 151

[Close]

BLAST of Lcy08g015670 vs. TAIR 10
Match: AT2G17740.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 32  DCNFHIHKSCLHLPLEIRRHCLHPQHPLHL----KSDSSSLGCNVCGQMSSGSDQVYDCR 91
           +C++ +HKSC  LP EI RH  HP HPL L    ++++S+  C+ CG+  SG    Y+C 
Sbjct: 47  ECDYFLHKSCFDLPREI-RHKSHPDHPLILLYSPQNNNSTYTCDACGEYGSGF--TYNCS 106

Query: 92  KCKFKVDIEC 98
            C++ V + C
Sbjct: 107 ICQYDVHVGC 113

[Close]

BLAST of Lcy08g015670 vs. TAIR 10
Match: AT5G59920.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.7e-08
Identity = 28/67 (41.79%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 33  CNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSDSSSLGCNVCGQMSSGSDQVYDCRKCKFK 92
           C    HK C   P EI  H  HP+HPL L +DS    C++CGQ        Y C  C+FK
Sbjct: 46  CYVWFHKDCAEAPGEI-SHSSHPEHPLLLTNDSKDGPCDLCGQKL--LTPCYSCPTCEFK 105

Query: 93  VDIECAI 100
           VD+ C +
Sbjct: 106 VDLTCGM 109

[Close]

BLAST of Lcy08g015670 vs. TAIR 10
Match: AT2G44380.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-07
Identity = 27/70 (38.57%), Postives = 37/70 (52.86%), Query Frame = 0


Query: 32  DCNFHIHKSCLHLPLEIRRHCLHPQHP---LHLKSDSSSLGCNVCGQMSSGSDQVYDCRK 91
           DC++ +HKSC  LP E   H  HP H    LH      S  C+ CG+  SG    Y+C +
Sbjct: 52  DCDYFLHKSCFDLPRE-TNHKSHPNHSLTLLHSPPYGQSYTCDACGEYGSGF--TYNCSE 111

Query: 92  CKFKVDIECA 99
           C++ V + CA
Sbjct: 112 CQYDVHVGCA 118

[Close]

BLAST of Lcy08g015670 vs. TAIR 10
Match: AT2G44370.1 (Cysteine/Histidine-rich C1 domain family protein )

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-07
Identity = 27/69 (39.13%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 32  DCNFHIHKSCLHLPLEIRRHCLHPQHPLHLKSD---SSSLGCNVCGQMSSGSDQVYDCRK 91
           +C++ +HKSC  LP E  RH  HP HPL L       S+  C+ CG+  SG    Y+C  
Sbjct: 48  ECDYFLHKSCFELPRE-TRHKAHPDHPLILLYSPPYESTYTCDACGEYGSGF--TYNCSI 107

Query: 92  CKFKVDIEC 98
           C++ V + C
Sbjct: 108 CQYDVHVGC 113

The following BLAST results are available for this feature:

BLAST of Lcy08g015670 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g015670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIW3	3.0e-20	50.89	Putative Cysteine/Histidine-rich C1 domain family protein OS=Cucumis melo var. m...	[more]
A0A0A0LDB7	1.2e-19	53.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G859620 PE=3 SV=1	[more]
A0A1S3CT35	4.4e-19	50.00	uncharacterized protein LOC103504031 OS=Cucumis melo OX=3656 GN=LOC103504031 PE=...	[more]
A0A6J1ID94	3.7e-18	52.13	uncharacterized protein LOC111474927 OS=Cucurbita maxima OX=3661 GN=LOC111474927...	[more]
A0A6J1F942	6.3e-18	51.06	uncharacterized protein LOC111443441 OS=Cucurbita moschata OX=3662 GN=LOC1114434...	[more]

BLAST of Lcy08g015670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041587.1	6.3e-20	50.89	putative Cysteine/Histidine-rich C1 domain family protein [Cucumis melo var. mak...	[more]
KGN60121.2	2.4e-19	53.68	hypothetical protein Csa_000943 [Cucumis sativus]	[more]
XP_011652423.1	2.4e-19	53.68	uncharacterized protein LOC105435021 isoform X1 [Cucumis sativus]	[more]
XP_031738575.1	2.4e-19	53.68	uncharacterized protein LOC105435021 isoform X2 [Cucumis sativus]	[more]
XP_008466678.2	9.0e-19	50.00	PREDICTED: uncharacterized protein LOC103504031 [Cucumis melo]	[more]

BLAST of Lcy08g015670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21840.1	3.9e-12	32.61	Cysteine/Histidine-rich C1 domain family protein	[more]
AT2G17740.1	1.5e-08	40.00	Cysteine/Histidine-rich C1 domain family protein	[more]
AT5G59920.1	7.7e-08	41.79	Cysteine/Histidine-rich C1 domain family protein	[more]
AT2G44380.1	2.2e-07	38.57	Cysteine/Histidine-rich C1 domain family protein	[more]
AT2G44370.1	2.2e-07	39.13	Cysteine/Histidine-rich C1 domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004146	DC1	PFAM	PF03107	C1_2	coord: 53..98 e-value: 2.3E-10 score: 40.6
None	No IPR available	GENE3D	3.30.60.20		coord: 55..105 e-value: 4.1E-5 score: 25.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..153
None	No IPR available	PANTHER	PTHR32410	CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN	coord: 24..107
None	No IPR available	PANTHER	PTHR32410:SF178	CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN	coord: 24..107
None	No IPR available	SUPERFAMILY	57889	Cysteine-rich domain	coord: 32..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g015670.1	Lcy08g015670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005488	binding