Lcy08g014690 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g014690
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr08: 44783218 .. 44784111 (-)
RNA-Seq ExpressionLcy08g014690
SyntenyLcy08g014690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTAGCAGCAATCAAGGAAAGTTTGTCTTCTTACCTTATGATTGATCATCCAAGATGCTCTGCTGTGATCATGGAAGCTGATGCCCTTGAGGTAATCAAAGCTCTGAATCGAGAGTGTGTGGATATTTCTGAAGCCAAGGCGATGTTGCTTGACATTGAAGATCTAGTGGCAAAATCGGATGTTTTATCCTTTGTGAAATGCCCAAGAGCAGGCAATCGTGTGGCACACTCCATTGTGCGGGCAGCGGCGAGCCTCCCTCCGATGTCTTCTCCGTCGACCATTGTTGCTGGCGGATTTTTTGAACTTTCTTTCCCTTCCATGTTGGAAGAAGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAAAAAAAAGCTGTGTTTTTGTAGGGATGAAAATATCCCCTCTTGGTTAGCCTCTTTAATTGAAGAGGATGTTGTTTCAACTAACTCTGCTCCTTTTTAATGAAGTTTATTTTTCAAAAAAAAAAAAAAACAAAAACAAACAAACAAACAATGGAAGGATAAATAGATGGTTTCCAAATTCACCGGATTTTTAGAAAAGCTACTATTTTTAGATTTTCCAAAACAATGTCACTGAAAAAGTGCTTTCATTAAATTATGTTATAATCAATTGTACCAACGCTAAAAACAATTAAAATTCTTCTATAATCACTTTTATAAATTAATTTCTTTTTTTTTTTAAAAAATAACTTTATAATAATTCATGACATCATTATTTTATTTATTTATTATTATTATTATTTAAAGATAAGATCATTATATAAACGTGAGACTACAAGTTTTCAAATTTGTCAGGCGATAAAAGTGAGAATTTCGTACAAACTCGTCAGCTCTGCCAATCCAAAATATCATCTCGCGATCAATTGA

mRNA sequence

ATGGAATTAGCAGCAATCAAGGAAAGTTTGTCTTCTTACCTTATGATTGATCATCCAAGATGCTCTGCTGTGATCATGGAAGCTGATGCCCTTGAGGTAATCAAAGCTCTGAATCGAGAGTGTGTGGATATTTCTGAAGCCAAGGCGATGTTGCTTGACATTGAAGATCTAGTGGCAAAATCGGATGTTTTATCCTTTGTGAAATGCCCAAGAGCAGGCAATCGTGTGGCACACTCCATTGTGCGGGCAGCGGCGAGCCTCCCTCCGATGTCTTCTCCGTCGACCATTGTTGCTGGCGGATTTTTTGAACTTTCTTTCCCTTCCATGTTGGAAGAAGCTATAAGATCATTATATAAACGTGAGACTACAAGTTTTCAAATTTGTCAGGCGATAAAAGTGAGAATTTCGTACAAACTCGTCAGCTCTGCCAATCCAAAATATCATCTCGCGATCAATTGA

Coding sequence (CDS)

ATGGAATTAGCAGCAATCAAGGAAAGTTTGTCTTCTTACCTTATGATTGATCATCCAAGATGCTCTGCTGTGATCATGGAAGCTGATGCCCTTGAGGTAATCAAAGCTCTGAATCGAGAGTGTGTGGATATTTCTGAAGCCAAGGCGATGTTGCTTGACATTGAAGATCTAGTGGCAAAATCGGATGTTTTATCCTTTGTGAAATGCCCAAGAGCAGGCAATCGTGTGGCACACTCCATTGTGCGGGCAGCGGCGAGCCTCCCTCCGATGTCTTCTCCGTCGACCATTGTTGCTGGCGGATTTTTTGAACTTTCTTTCCCTTCCATGTTGGAAGAAGCTATAAGATCATTATATAAACGTGAGACTACAAGTTTTCAAATTTGTCAGGCGATAAAAGTGAGAATTTCGTACAAACTCGTCAGCTCTGCCAATCCAAAATATCATCTCGCGATCAATTGA

Protein sequence

MELAAIKESLSSYLMIDHPRCSAVIMEADALEVIKALNRECVDISEAKAMLLDIEDLVAKSDVLSFVKCPRAGNRVAHSIVRAAASLPPMSSPSTIVAGGFFELSFPSMLEEAIRSLYKRETTSFQICQAIKVRISYKLVSSANPKYHLAIN
Homology
The following BLAST results are available for this feature:
BLAST of Lcy08g014690 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g014690 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g014690 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy08g014690 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 22..83
e-value: 2.3E-6
score: 27.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g014690.1Lcy08g014690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity