Lcy08g013700 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g013700
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ubiquitin
Location	Chr08: 43733620 .. 43734405 (+)
RNA-Seq Expression	Lcy08g013700
Synteny	Lcy08g013700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGTTCTCTTGCATCAAATCAAACCAAAACAAATAATCTGGTTCATTTCATCAAAACTTATGCTATATATGGACGTACTAACAACTTCAATCGATTTCCAATTTCCAATTGTCTGTTACTATTCAGTATGTTTTCTATGCCCCATTTATGTACAGGCCATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGCGATCCAATTGAGACAACTTTAAACATCAAGCAAAAATTAGAAACCCTTATTGACCAACCAGTAGTTGATCAGCGCTTGATTCTGGTGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTAGCTGATCAGAAGGTATGTCTTAAATTCCTATATTTATGACATTTGGCCATCGATCATCGGATGTTTTGGAAATATTAAGATGAAGGCAATACAACAGCTGCACCTCTAATAAAGATTTGCTATGTATTTTCAGGTTGAAAATGATGCAGTTGTGGCTCTAACATTGCGAAAAGGTTTTTTCCTTTTTGTGTAACTTCTGGCACTTGTTTTTAAAAGCCTATGTTCTGATAAGGGACCAAAAATTATTTGTGGGGGTCGAATTAGATTCGGAGTCTTCATAGATATGATGTTCATTGTTGTTGGATTTGGATTTGAAATTTGTAACGTTGTCTCATCACCCATTTTCTTGATCTTTTCCCCCTCTGTGTAGATGATAATGAGTTCGAGGAGATTGACATTGTCCAGCCAAACGATTTCTACCCATCTCGTGATGCTGATTCTGGCAATTGGTAA

mRNA sequence

ATGCTTGTTCTCTTGCATCAAATCAAACCAAAACAAATAATCTGGTTCATTTCATCAAAACTTATGCTATATATGGACGTACTAACAACTTCAATCGATTTCCAATTTCCAATTGTCTGTTACTATTCAGTATGTTTTCTATGCCCCATTTATGTACAGGCCATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGCGATCCAATTGAGACAACTTTAAACATCAAGCAAAAATTAGAAACCCTTATTGACCAACCAGTAGTTGATCAGCGCTTGATTCTGGTGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTAGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACATTGCGAAAAGATGATAATGAGTTCGAGGAGATTGACATTGTCCAGCCAAACGATTTCTACCCATCTCGTGATGCTGATTCTGGCAATTGGTAA

Coding sequence (CDS)

ATGCTTGTTCTCTTGCATCAAATCAAACCAAAACAAATAATCTGGTTCATTTCATCAAAACTTATGCTATATATGGACGTACTAACAACTTCAATCGATTTCCAATTTCCAATTGTCTGTTACTATTCAGTATGTTTTCTATGCCCCATTTATGTACAGGCCATGTATATCCGAATCAAGCGCCATAAGACAACCTACTTTATCCAGTGCGATCCAATTGAGACAACTTTAAACATCAAGCAAAAATTAGAAACCCTTATTGACCAACCAGTAGTTGATCAGCGCTTGATTCTGGTGGGGAGTGGGGAAGTATTGGAGGATTCAAAGACACTAGCTGATCAGAAGGTTGAAAATGATGCAGTTGTGGCTCTAACATTGCGAAAAGATGATAATGAGTTCGAGGAGATTGACATTGTCCAGCCAAACGATTTCTACCCATCTCGTGATGCTGATTCTGGCAATTGGTAA

Protein sequence

MLVLLHQIKPKQIIWFISSKLMLYMDVLTTSIDFQFPIVCYYSVCFLCPIYVQAMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW

Homology

[Close]

BLAST of Lcy08g013700 vs. ExPASy TrEMBL
Match: A0A6J1HY58 (uncharacterized protein LOC111468551 OS=Cucurbita maxima OX=3661 GN=LOC111468551 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQP+VDQRLILVGSGEVLEDSKTLAD
Sbjct: 2   AMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           QKVENDAVVALTLRKDDNEFEEIDIV  NDFY SR+ADSGNW
Sbjct: 62  QKVENDAVVALTLRKDDNEFEEIDIVSTNDFYQSREADSGNW 103

[Close]

BLAST of Lcy08g013700 vs. ExPASy TrEMBL
Match: A0A6J1FIC7 (uncharacterized protein LOC111444204 OS=Cucurbita moschata OX=3662 GN=LOC111444204 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-45
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQP+VDQRLILVGSGEVLEDSKTLAD
Sbjct: 2   AMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           QKVENDAVVALTLRKDDNEFEEIDIV  NDFY SR+ADSGNW
Sbjct: 62  QKVENDAVVALTLRKDDNEFEEIDIVSTNDFYQSREADSGNW 103

[Close]

BLAST of Lcy08g013700 vs. ExPASy TrEMBL
Match: A0A1S3BTJ1 (uncharacterized protein LOC103493547 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493547 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.6e-45
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQPVVDQRLIL+GSGEVLEDSKTLAD
Sbjct: 2   AMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           QKVENDAVVALTLRK+DN+FEEI+IV PNDFY SRDADSGNW
Sbjct: 62  QKVENDAVVALTLRKEDNDFEEINIVHPNDFYQSRDADSGNW 103

[Close]

BLAST of Lcy08g013700 vs. ExPASy TrEMBL
Match: A0A5A7UM04 (Ubiquitin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00260 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.0e-44
Identity = 94/101 (93.07%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 55  MYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLADQ 114
           MYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQPVVDQRLIL+GSGEVLEDSKTLADQ
Sbjct: 1   MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQ 60

Query: 115 KVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           KVENDAVVALTLRK+DN+FEEI+IV PNDFY SRDADSGNW
Sbjct: 61  KVENDAVVALTLRKEDNDFEEINIVHPNDFYQSRDADSGNW 101

[Close]

BLAST of Lcy08g013700 vs. ExPASy TrEMBL
Match: A0A6J1DV27 (uncharacterized protein LOC111024713 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024713 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 6.8e-44
Identity = 93/102 (91.18%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIRIKRHKTTYFIQCDPIETTL+IKQKL TLIDQP+VDQRLILVGSGEVLED+KTLAD
Sbjct: 2   AMYIRIKRHKTTYFIQCDPIETTLDIKQKLATLIDQPLVDQRLILVGSGEVLEDTKTLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           QKVENDAVVALTLRKDDNEFEEI+IV+P++FY SRDADSGNW
Sbjct: 62  QKVENDAVVALTLRKDDNEFEEINIVRPDEFYQSRDADSGNW 103

[Close]

BLAST of Lcy08g013700 vs. NCBI nr
Match: XP_038889494.1 (uncharacterized protein LOC120079401 isoform X2 [Benincasa hispida])

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-46
Identity = 97/102 (95.10%), Postives = 101/102 (99.02%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQPVVDQRLILVGSGEVLEDSKTLAD
Sbjct: 2   AMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILVGSGEVLEDSKTLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           QKVENDAVVALTLRKDDN+FEEIDI+QPNDFY SRDAD+GNW
Sbjct: 62  QKVENDAVVALTLRKDDNDFEEIDIIQPNDFYQSRDADAGNW 103

[Close]

BLAST of Lcy08g013700 vs. NCBI nr
Match: XP_022937980.1 (uncharacterized protein LOC111444204 [Cucurbita moschata] >XP_022969566.1 uncharacterized protein LOC111468551 [Cucurbita maxima] >XP_023536780.1 uncharacterized protein LOC111798058 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.8 bits (486), Expect = 4.4e-45
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQP+VDQRLILVGSGEVLEDSKTLAD
Sbjct: 2   AMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           QKVENDAVVALTLRKDDNEFEEIDIV  NDFY SR+ADSGNW
Sbjct: 62  QKVENDAVVALTLRKDDNEFEEIDIVSTNDFYQSREADSGNW 103

[Close]

BLAST of Lcy08g013700 vs. NCBI nr
Match: XP_008452565.1 (PREDICTED: uncharacterized protein LOC103493547 isoform X1 [Cucumis melo])

HSP 1 Score: 191.0 bits (484), Expect = 7.4e-45
Identity = 95/102 (93.14%), Postives = 100/102 (98.04%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQPVVDQRLIL+GSGEVLEDSKTLAD
Sbjct: 2   AMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           QKVENDAVVALTLRK+DN+FEEI+IV PNDFY SRDADSGNW
Sbjct: 62  QKVENDAVVALTLRKEDNDFEEINIVHPNDFYQSRDADSGNW 103

[Close]

BLAST of Lcy08g013700 vs. NCBI nr
Match: KAG7020821.1 (hypothetical protein SDJN02_17509 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-44
Identity = 95/102 (93.14%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQP+VDQRLILVGSGEVLEDSKTLAD
Sbjct: 2   AMYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPIVDQRLILVGSGEVLEDSKTLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           QKVENDAVVALTLRKDDNEFEEI+IV  NDFY SR+ADSGNW
Sbjct: 62  QKVENDAVVALTLRKDDNEFEEINIVSTNDFYQSREADSGNW 103

[Close]

BLAST of Lcy08g013700 vs. NCBI nr
Match: KAA0056118.1 (Ubiquitin [Cucumis melo var. makuwa] >TYJ96399.1 Ubiquitin [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-44
Identity = 94/101 (93.07%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 55  MYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLADQ 114
           MYIRIKRHKTTYFIQCDPIETTLNIKQKLE+LIDQPVVDQRLIL+GSGEVLEDSKTLADQ
Sbjct: 1   MYIRIKRHKTTYFIQCDPIETTLNIKQKLESLIDQPVVDQRLILMGSGEVLEDSKTLADQ 60

Query: 115 KVENDAVVALTLRKDDNEFEEIDIVQPNDFYPSRDADSGNW 156
           KVENDAVVALTLRK+DN+FEEI+IV PNDFY SRDADSGNW
Sbjct: 61  KVENDAVVALTLRKEDNDFEEINIVHPNDFYQSRDADSGNW 101

[Close]

BLAST of Lcy08g013700 vs. TAIR 10
Match: AT5G57860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 5.3e-33
Identity = 68/91 (74.73%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIR+KR KTTYFIQCDP ET L++KQKL  LI+QPV +QRL+L+ + EVLEDSK+LAD
Sbjct: 2   AMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDF 145
           QKVENDAVVALTL+KDDNEFE+++I QP DF
Sbjct: 62  QKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92

[Close]

BLAST of Lcy08g013700 vs. TAIR 10
Match: AT5G57860.3 (Ubiquitin-like superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 5.3e-33
Identity = 68/91 (74.73%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIR+KR KTTYFIQCDP ET L++KQKL  LI+QPV +QRL+L+ + EVLEDSK+LAD
Sbjct: 2   AMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDF 145
           QKVENDAVVALTL+KDDNEFE+++I QP DF
Sbjct: 62  QKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92

[Close]

BLAST of Lcy08g013700 vs. TAIR 10
Match: AT5G57860.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 5.3e-33
Identity = 68/91 (74.73%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIR+KR KTTYFIQCDP ET L++KQKL  LI+QPV +QRL+L+ + EVLEDSK+LAD
Sbjct: 2   AMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLAD 61

Query: 114 QKVENDAVVALTLRKDDNEFEEIDIVQPNDF 145
           QKVENDAVVALTL+KDDNEFE+++I QP DF
Sbjct: 62  QKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92

[Close]

BLAST of Lcy08g013700 vs. TAIR 10
Match: AT5G57860.4 (Ubiquitin-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-19
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 54  AMYIRIKRHKTTYFIQCDPIETTLNIKQKLETLIDQPVVDQRLILVGSGEVLEDSKTLAD 113
           AMYIR+KR KTTYFIQCDP ET L++KQKL  LI+QPV +QRL+L+ + EVLEDSK+LAD
Sbjct: 2   AMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLAD 61

Query: 114 QKVEN 119
           QKV +
Sbjct: 62  QKVSH 66

The following BLAST results are available for this feature:

BLAST of Lcy08g013700 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g013700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HY58	2.1e-45	94.12	uncharacterized protein LOC111468551 OS=Cucurbita maxima OX=3661 GN=LOC111468551...	[more]
A0A6J1FIC7	2.1e-45	94.12	uncharacterized protein LOC111444204 OS=Cucurbita moschata OX=3662 GN=LOC1114442...	[more]
A0A1S3BTJ1	3.6e-45	93.14	uncharacterized protein LOC103493547 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UM04	1.0e-44	93.07	Ubiquitin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00260 PE=4...	[more]
A0A6J1DV27	6.8e-44	91.18	uncharacterized protein LOC111024713 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Lcy08g013700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889494.1	2.3e-46	95.10	uncharacterized protein LOC120079401 isoform X2 [Benincasa hispida]	[more]
XP_022937980.1	4.4e-45	94.12	uncharacterized protein LOC111444204 [Cucurbita moschata] >XP_022969566.1 unchar...	[more]
XP_008452565.1	7.4e-45	93.14	PREDICTED: uncharacterized protein LOC103493547 isoform X1 [Cucumis melo]	[more]
KAG7020821.1	1.7e-44	93.14	hypothetical protein SDJN02_17509 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0056118.1	2.2e-44	93.07	Ubiquitin [Cucumis melo var. makuwa] >TYJ96399.1 Ubiquitin [Cucumis melo var. ma...	[more]

BLAST of Lcy08g013700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57860.1	5.3e-33	74.73	Ubiquitin-like superfamily protein	[more]
AT5G57860.3	5.3e-33	74.73	Ubiquitin-like superfamily protein	[more]
AT5G57860.2	5.3e-33	74.73	Ubiquitin-like superfamily protein	[more]
AT5G57860.4	1.5e-19	70.77	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 55..127 e-value: 6.7E-9 score: 45.6
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 57..128 e-value: 7.4E-10 score: 38.4
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 55..131 score: 14.664942
None	No IPR available	GENE3D	3.10.20.90		coord: 54..144 e-value: 5.2E-19 score: 70.2
None	No IPR available	PANTHER	PTHR47725	OS03G0364000 PROTEIN	coord: 54..151
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 55..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g013700.1	Lcy08g013700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding