Lcy08g013590 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g013590
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr08: 43596086 .. 43597405 (-)
RNA-Seq Expression	Lcy08g013590
Synteny	Lcy08g013590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTCGATGAGTCTCTAAAAGGATTGTATGTTTCATCCATTCTTAACAGAGACGGATCATGGAGGAATGATATAATCAGCGCTAATATTAGCCATTCAGACAAAGAGGACATACACAACACTATAGCCGGGGGAGAGAATTTCAAGGACGAGATTATTTGGAACCACGACTCCAAAGGCATTTTCTCCGTTAAAAGTGCCTACCACCTTGCAGTGGACCTCCACAACAATGCCAAAGCTTCCTCTTCTAAAATGGGGGACCCGAGCCCGTTTTGGAGAAGATTTTGAAAAATCAAAACAATTCCAAAAGCGAAAATCAGTGCCTGGCGAATCATACACGACTCTATCCCTACCAAAACTAGTATTAGGAAAAAAGGGATTGATACTAATTCCTTGTGTTTGTTTTGCAGGAAATCTGAAGAATCAACAACTCACTGTCTTTGGAATTGTAAGTTGGCAAAAAATACATGGAGTTATCTAATTCCCCTGACTAGAGATCTGTTTGGTCTGAATAGGAACGAGTGGAAGCCTATTGACTACTGGGCTTGGATCAATGAAAACCTCAATGACAAGGATTTGGAGAAGGCGATTCTCATTCTATGGGAGCTTTGGAAGCACAGAAACAATACCATTCACAATTCTATAAAGCCAAATCAAAACACAGTGATCAGAGCAGTGGAGGTCTTAACTACTGAAGGAGAAAGTTACCTCTCAGCAGCAACACCCTCGGAGTCCTCAAGATCGAAGACCCTGCCGAGTCAAAGCATCTGGGTTCCTCCTCCTCCCGGCACTTGGAAACTCAATGTGGATGCCTCTCGTGATGTAGCGCAAAACAGAGGAGGAGTGAGGTGGATTTTGCGTGACTCTTCAGGTTCTACCATCTGTGAAGGATTTAGAAGAATCAACGAAAATTGGTCAGTAAAGATGCTTGAGATGAAAGCAATCCTTGACGGGTTAGAAAAGCTACCGTCAATCAGAGCTTCTCGCCCAAATCTGAAAATCTCGCCTATTCAGGTGGCCTCTGACGCCATTGGCGTGGTCAAGCTTCTCAATAAGGAAGACGTCGATCAATCGAAAATTTCCTTCTTCGTCGTCGGCATTGAGCTTCTGGTCGTCGAGTTAGGCAAAATCAGTTTCACCCATATCTCGCTTGCTCTTAATGAATATGCCCACAATCTGGCGCGCTTCGCGGTTTTTGGAAATTCTCAGAGTTTTTTTGTGTCTTTTGGATCCTTCTTCCACTTCGGAAGGGGTTTTTTTTTGTATGGGTTGGGTTCTACCCGATATTATTTACTCCCTCTCCAGGGAGGTTGTTGA

mRNA sequence

ATGTGGGTCGATGAGTCTCTAAAAGGATTAAACAATACCATTCACAATTCTATAAAGCCAAATCAAAACACAGTGATCAGAGCAGTGGAGGTCTTAACTACTGAAGGAGAAAGTTACCTCTCAGCAGCAACACCCTCGGAGTCCTCAAGATCGAAGACCCTGCCGAGTCAAAGCATCTGGGTTCCTCCTCCTCCCGGCACTTGGAAACTCAATGTGGATGCCTCTCGTGATGTAGCGCAAAACAGAGGAGGAGTGAGGTGGATTTTGCGTGACTCTTCAGGTTCTACCATCTGTGAAGGATTTAGAAGAATCAACGAAAATTGGTCAGTAAAGATGCTTGAGATGAAAGCAATCCTTGACGGGTTAGAAAAGCTACCGTCAATCAGAGCTTCTCGCCCAAATCTGAAAATCTCGCCTATTCAGGTGGCCTCTGACGCCATTGGCGTGGTCAAGCTTCTCAATAAGGAAGACGTCGATCAATCGAAAATTTCCTTCTTCGTCGTCGGCATTGAGCTTCTGGTCGTCGAGTTAGGCAAAATCAGTTTCACCCATATCTCGCTTGCTCTTAATGAATATGCCCACAATCTGGCGCGCTTCGCGGTTTTTGGAAATTCTCAGAGTTTTTTTGTGTCTTTTGGATCCTTCTTCCACTTCGGAAGGGGTTTTTTTTTGTATGGGTTGGGTTCTACCCGATATTATTTACTCCCTCTCCAGGGAGGTTGTTGA

Coding sequence (CDS)

ATGTGGGTCGATGAGTCTCTAAAAGGATTAAACAATACCATTCACAATTCTATAAAGCCAAATCAAAACACAGTGATCAGAGCAGTGGAGGTCTTAACTACTGAAGGAGAAAGTTACCTCTCAGCAGCAACACCCTCGGAGTCCTCAAGATCGAAGACCCTGCCGAGTCAAAGCATCTGGGTTCCTCCTCCTCCCGGCACTTGGAAACTCAATGTGGATGCCTCTCGTGATGTAGCGCAAAACAGAGGAGGAGTGAGGTGGATTTTGCGTGACTCTTCAGGTTCTACCATCTGTGAAGGATTTAGAAGAATCAACGAAAATTGGTCAGTAAAGATGCTTGAGATGAAAGCAATCCTTGACGGGTTAGAAAAGCTACCGTCAATCAGAGCTTCTCGCCCAAATCTGAAAATCTCGCCTATTCAGGTGGCCTCTGACGCCATTGGCGTGGTCAAGCTTCTCAATAAGGAAGACGTCGATCAATCGAAAATTTCCTTCTTCGTCGTCGGCATTGAGCTTCTGGTCGTCGAGTTAGGCAAAATCAGTTTCACCCATATCTCGCTTGCTCTTAATGAATATGCCCACAATCTGGCGCGCTTCGCGGTTTTTGGAAATTCTCAGAGTTTTTTTGTGTCTTTTGGATCCTTCTTCCACTTCGGAAGGGGTTTTTTTTTGTATGGGTTGGGTTCTACCCGATATTATTTACTCCCTCTCCAGGGAGGTTGTTGA

Protein sequence

MWVDESLKGLNNTIHNSIKPNQNTVIRAVEVLTTEGESYLSAATPSESSRSKTLPSQSIWVPPPPGTWKLNVDASRDVAQNRGGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAILDGLEKLPSIRASRPNLKISPIQVASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVELGKISFTHISLALNEYAHNLARFAVFGNSQSFFVSFGSFFHFGRGFFLYGLGSTRYYLLPLQGGC

Homology

[Close]

BLAST of Lcy08g013590 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 0


Query: 60  WVPPPPGTWKLNVDASRDVAQNRGGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAIL 119
           W PP   +WKLN DA+     N GG+ WILRD  G  I    R I    ++  LE+ AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 120 DGLEKLPSIRASRP--NLKISPIQVASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVEL 179
           +GL  +      RP       PI + SD++  + LL+++  DQ++I + +  I  ++ ++
Sbjct: 139 EGLRAIRQ-EHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDM 198

Query: 180 GKISFTHISLALNEYAHNLARFAV 202
             +S  HIS   N+ AH+LAR A+
Sbjct: 199 KIVSMRHISREANKVAHDLARRAM 221

[Close]

BLAST of Lcy08g013590 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.1e-12
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 60  WVPPPPGTWKLNVDASRDVAQNRGGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAIL 119
           W PP   +WKLN +A+     N GG+ WILRD  G  I    R I    ++  LE+ AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 120 DGLEKLPSIRASRPNLKISPIQVASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVELGK 179
           +GL      RA R      PI + SD++  + LL+++  DQ++I + +  I  ++ ++  
Sbjct: 139 EGL------RAIRQE-HCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEI 198

Query: 180 ISFTHISLALNEYAHNLARFAV 202
           +S  HIS   N+ AH LAR A+
Sbjct: 199 VSMRHISREANKVAHGLARRAM 213

[Close]

BLAST of Lcy08g013590 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-12
Identity = 60/178 (33.71%), Postives = 90/178 (50.56%), Query Frame = 0


Query: 23  NTVIRAVEVLTTEGESYLSAATPSESSRSKTLPSQSIWVPPPPGTWKLNVDASRDVAQNR 82
           +T+I+ +    TE  SY S    S S   KTL ++  W PPP   W LN DAS   + +R
Sbjct: 37  STMIQQLTKFVTE-SSYQSET--SLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHR 96

Query: 83  GGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAILDGLEKLPSIRASRPNLKISPIQV 142
           GG+ WI+R   G  +  G R +    +VK+LE  AIL+GL  L ++   R      P+ +
Sbjct: 97  GGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLR------PLHI 156

Query: 143 ASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVELGKISFTHISLALNEYAHNLARFA 201
            +D+  V  LLN++  D +K  + V  I  L      ++F  +    N  AH+LA+ A
Sbjct: 157 ETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRA 205

[Close]

BLAST of Lcy08g013590 vs. ExPASy TrEMBL
Match: A0A5C7IST2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-10
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 0


Query: 34  TEGESYLSAATPSES-SRSKTLPSQSI--WVPPPPGTWKLNVDASRDVAQNRGGVRWILR 93
           T+   +LS     E+ + S  +PS  I  W+PP  GT K+NVDA+ DV +N+  V  ++R
Sbjct: 208 TKATLFLSGGKTIETQNNSSAIPSLVIKNWIPPSFGTIKVNVDAALDVGRNKFSVGIVIR 267

Query: 94  DSSGSTICEGFRRINENWSVKMLEMKAILDGLEKLPSIRASRPNLKISPIQVASDAIGVV 153
           DSSG  +       N   S  + E K I +GL     + A+   L+  P+ + SD++ VV
Sbjct: 268 DSSGRILKSAALVFNGRTSTDIAEAKVIYEGL-----LLATSSGLQ--PLSIESDSLNVV 327

Query: 154 KLLNKEDVDQSKISFFVVGIELLVVELGKISFTHISLALNEYAHNLARFAV 202
           +L N E   ++ +   +  I+ L+    K S ++I  + N  AH +AR A+
Sbjct: 328 RLCNGEISTRNDVFNVICDIQFLLSRERKTSISYIPRSCNRVAHEVARRAI 371

[Close]

BLAST of Lcy08g013590 vs. ExPASy TrEMBL
Match: A0A1S8ADA4 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 51/190 (26.84%), Postives = 98/190 (51.58%), Query Frame = 0


Query: 22  QNTVIRAVEVLTTEGESYLSAATPSE-SSRSKTLPSQSIWVPPPPGTWKLNVDASRDVAQ 81
           +N+V RA+ ++    ESY     P+E +S   +  SQ  W  PP G +K+NVDA+ +V+ 
Sbjct: 44  KNSVARAIAMV----ESYRRIKVPNEQNSPGHSRISQLEWANPPKGCYKVNVDAAINVSN 103

Query: 82  NRGGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAILDGLEKLPSIRASRPNLKISPI 141
            + G+  ++R+S G  +    +       V  +E +A+L G++       S     + PI
Sbjct: 104 QKAGLGVVIRNSVGKVVAAAVQGTPYRGDVACMEAEAVLFGIQ-------SAQQAAVFPI 163

Query: 142 QVASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVELGKISFTHISLALNEYAHNLARFA 201
            + SD+  VV L  K+ + +++I + +  I+  +      S +++  + N  AH++A+ A
Sbjct: 164 IIESDSKEVVDLSLKKKISKTEIEWKIAEIQANLENQNVSSLSYVPRSCNSIAHSIAKIA 222

Query: 202 VFGNSQSFFV 211
           +   SQ F++
Sbjct: 224 LGFESQVFWL 222

[Close]

BLAST of Lcy08g013590 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-12
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 0


Query: 60  WVPPPPGTWKLNVDASRDVAQNRGGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAIL 119
           W PP   +WKLN DA+     N GG+ WILRD  G  I    R I    ++  LE+ AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 120 DGLEKLPSIRASRP--NLKISPIQVASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVEL 179
           +GL  +      RP       PI + SD++  + LL+++  DQ++I + +  I  ++ ++
Sbjct: 139 EGLRAIRQ-EHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDM 198

Query: 180 GKISFTHISLALNEYAHNLARFAV 202
             +S  HIS   N+ AH+LAR A+
Sbjct: 199 KIVSMRHISREANKVAHDLARRAM 221

[Close]

BLAST of Lcy08g013590 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-12
Identity = 50/142 (35.21%), Postives = 76/142 (53.52%), Query Frame = 0


Query: 60  WVPPPPGTWKLNVDASRDVAQNRGGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAIL 119
           W PP   +WKLN +A+     N GG+ WILRD  G  I    R I    ++  LE+ AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 120 DGLEKLPSIRASRPNLKISPIQVASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVELGK 179
           +GL      RA R      PI + SD++  + LL+++  DQ++I + +  I  ++ ++  
Sbjct: 139 EGL------RAIRQE-HCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEI 198

Query: 180 ISFTHISLALNEYAHNLARFAV 202
           +S  HIS   N+ AH LAR A+
Sbjct: 199 VSMRHISREANKVAHGLARRAM 213

[Close]

BLAST of Lcy08g013590 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 82.0 bits (201), Expect = 7.6e-12
Identity = 60/178 (33.71%), Postives = 90/178 (50.56%), Query Frame = 0


Query: 23  NTVIRAVEVLTTEGESYLSAATPSESSRSKTLPSQSIWVPPPPGTWKLNVDASRDVAQNR 82
           +T+I+ +    TE  SY S    S S   KTL ++  W PPP   W LN DAS   + +R
Sbjct: 37  STMIQQLTKFVTE-SSYQSET--SLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHR 96

Query: 83  GGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAILDGLEKLPSIRASRPNLKISPIQV 142
           GG+ WI+R   G  +  G R +    +VK+LE  AIL+GL  L ++   R      P+ +
Sbjct: 97  GGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLR------PLHI 156

Query: 143 ASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVELGKISFTHISLALNEYAHNLARFA 201
            +D+  V  LLN++  D +K  + V  I  L      ++F  +    N  AH+LA+ A
Sbjct: 157 ETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRA 205

[Close]

BLAST of Lcy08g013590 vs. NCBI nr
Match: TXG71894.1 (hypothetical protein EZV62_000473 [Acer yangbiense])

HSP 1 Score: 76.3 bits (186), Expect = 4.2e-10
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 0


Query: 34  TEGESYLSAATPSES-SRSKTLPSQSI--WVPPPPGTWKLNVDASRDVAQNRGGVRWILR 93
           T+   +LS     E+ + S  +PS  I  W+PP  GT K+NVDA+ DV +N+  V  ++R
Sbjct: 208 TKATLFLSGGKTIETQNNSSAIPSLVIKNWIPPSFGTIKVNVDAALDVGRNKFSVGIVIR 267

Query: 94  DSSGSTICEGFRRINENWSVKMLEMKAILDGLEKLPSIRASRPNLKISPIQVASDAIGVV 153
           DSSG  +       N   S  + E K I +GL     + A+   L+  P+ + SD++ VV
Sbjct: 268 DSSGRILKSAALVFNGRTSTDIAEAKVIYEGL-----LLATSSGLQ--PLSIESDSLNVV 327

Query: 154 KLLNKEDVDQSKISFFVVGIELLVVELGKISFTHISLALNEYAHNLARFAV 202
           +L N E   ++ +   +  I+ L+    K S ++I  + N  AH +AR A+
Sbjct: 328 RLCNGEISTRNDVFNVICDIQFLLSRERKTSISYIPRSCNRVAHEVARRAI 371

[Close]

BLAST of Lcy08g013590 vs. NCBI nr
Match: XP_015382877.1 (uncharacterized protein LOC107175700 [Citrus sinensis])

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-09
Identity = 52/190 (27.37%), Postives = 99/190 (52.11%), Query Frame = 0


Query: 22  QNTVIRAVEVLTTEGESYLSAATPSE-SSRSKTLPSQSIWVPPPPGTWKLNVDASRDVAQ 81
           +N+V RA+ ++    ESY+    P+E +S   +  SQ  W  PP G +K+NVDA+ +V+ 
Sbjct: 191 KNSVARAIAMV----ESYMRIKVPNEQNSSGHSRISQLEWANPPKGCYKVNVDAAINVSN 250

Query: 82  NRGGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAILDGLEKLPSIRASRPNLKISPI 141
            + G+  ++R+S G  +    +       V  +E +A+L G++       S     + PI
Sbjct: 251 QKAGLGVVIRNSVGKVVAAAVQGAPYRGDVACMEAEAVLFGIQ-------SAQQAAVFPI 310

Query: 142 QVASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVELGKISFTHISLALNEYAHNLARFA 201
            + SD+  VV L  K+ + +++I + +  I+  +      S ++I  + N  AH++A+ A
Sbjct: 311 IIESDSKEVVDLSLKKKISKTEIEWKIAEIQANLENQNLSSLSYIPRSCNSIAHSIAKIA 369

Query: 202 VFGNSQSFFV 211
           +   SQ F++
Sbjct: 371 LGFESQVFWL 369

[Close]

BLAST of Lcy08g013590 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 7.3e-05
Identity = 40/142 (28.17%), Postives = 64/142 (45.07%), Query Frame = 0


Query: 60  WVPPPPGTWKLNVDASRDVAQNRGGVRWILRDSSGSTICEGFRRINENWSVKMLEMKAIL 119
           W  PP    K N DA+  +   R G+ WILR+ SG  +  G R +    +V   E++A+ 
Sbjct: 137 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEAL- 196

Query: 120 DGLEKLPSIRASRPNLKISPIQVASDAIGVVKLLNKEDVDQSKISFFVVGIELLVVELGK 179
               +   +  SR N K   I   SDA  +V LLN +D     +   +  I+ L+    +
Sbjct: 197 ----RWAVLTMSRFNYK--RIIFESDAQALVNLLNSDDF-WPTLQPALEDIQQLLHHFEE 256

Query: 180 ISFTHISLALNEYAHNLARFAV 202
           + F       N+ A  +AR ++
Sbjct: 257 VKFEFTPRGGNKVADRIARESI 270

The following BLAST results are available for this feature:

BLAST of Lcy08g013590 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g013590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	1.3e-12	34.72	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	2.1e-12	35.21	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DNV9	3.7e-12	33.71	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5C7IST2	2.0e-10	32.16	RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 ...	[more]
A0A1S8ADA4	2.9e-09	26.84	Polynucleotidyl transferase, ribonuclease H-like superfamily protein (Fragment) ...	[more]

BLAST of Lcy08g013590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	2.6e-12	34.72	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	4.4e-12	35.21	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022155262.1	7.6e-12	33.71	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
TXG71894.1	4.2e-10	32.16	hypothetical protein EZV62_000473 [Acer yangbiense]	[more]
XP_015382877.1	1.2e-09	27.37	uncharacterized protein LOC107175700 [Citrus sinensis]	[more]

BLAST of Lcy08g013590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	7.3e-05	28.17	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 71..200 e-value: 1.3E-16 score: 60.5
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 66..201 e-value: 1.2E-12 score: 50.0
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 57..200
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 57..200
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 70..198 e-value: 4.13299E-21 score: 83.5176
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 67..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g013590.1	Lcy08g013590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity