Lcy08g010600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g010600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr08: 34473523 .. 34474392 (-)
RNA-Seq Expression	Lcy08g010600
Synteny	Lcy08g010600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGAGCACCCATTCGAGATTCTCAAATTGATCTTTTCAGAAATGCTTTGGATGATTGTGGGTTGCAAGATTTAGACTACTCGGGGGAAATCTTTACTTGGACAAATCGCCAAAAGCTTTCATCCCAAATAAATGAGAGGCTTGACCGGTTCATTGCCAACGAAGAATTTCTACAATTTTTCCCTCATTGCTCGGTTTCACACCTGGACTGGGCACGATCCGATCACCGCCCCATTACGATTCAATTATGTGCAGGAGACGATAAATATGTTGACATGCGTAGGAAGAAGAAAATTTTTCGTTTCGAAGAAGTTTGGACTCAAAGTATTGACTGTAAAAAAATCATTTCTGAGTCTGGGGGATGGATTCATCAAAACTCAATGCCGCCACGTTTGGAATATTGCCTTCAGCGCTGTATAACACAACTACAGAAATGGGGCAAAGGTACTTACCCAACTCTTCGACGAAATATTGCAAAGCTTAAGGAGTCGTTATAGGATGTGTACAGGAGGCTCGCCCTTTGGGATTTTGATGCGATTAGGGATATAGAATCCAAATTAGACGGAGCTTTGGAAGATGAGGAAATTTACTGGAAACAGCGTTCCAGGGAAAACTGGTTGCAGTGGGGGGATCGTAATACAAAGTGGTTTCACAAGCGTGCAACCATGAGGAAGCGACGAAATAATATCCATGGTATTACCACACTGGAAGGGATTTGGACTTCATAGAGTAAACAGATTGAAGGTGCCTTTGTATCTTACTTTACAGATATGTTTCAGTCATCTAATCCCTCTGCAGAATATATTGATGTTGTGTTACAGGATATTCAATGTAAAGTCAGATCAGATGAACGCGAGACTTCTTGA

mRNA sequence

ATGGGTGGAGCACCCATTCGAGATTCTCAAATTGATCTTTTCAGAAATGCTTTGGATGATTGTGGGTTGCAAGATTTAGACTACTCGGGGGAAATCTTTACTTGGACAAATCGCCAAAAGCTTTCATCCCAAATAAATGAGAGGCTTGACCGGTTCATTGCCAACGAAGAATTTCTACAATTTTTCCCTCATTGCTCGGTTTCACACCTGGACTGGGCACGATCCGATCACCGCCCCATTACGATTCAATTATGTGCAGGAGACGATAAATATGTTGACATGCGTAGGAAGAAGAAAATTTTTCGTTTCGAAGAAGTTTGGACTCAAAGTATTGACTGTAAAAAAATCATTTCTGAGTCTGGGGGATGGATTCATCAAAACTCAATGCCGCCACGTTTGGAATATTGCCTTCAGCGCTGTATAACACAACTACAGAAATGGGGCAAAGATATGTTTCAGTCATCTAATCCCTCTGCAGAATATATTGATGTTGTGTTACAGGATATTCAATGTAAAGTCAGATCAGATGAACGCGAGACTTCTTGA

Coding sequence (CDS)

ATGGGTGGAGCACCCATTCGAGATTCTCAAATTGATCTTTTCAGAAATGCTTTGGATGATTGTGGGTTGCAAGATTTAGACTACTCGGGGGAAATCTTTACTTGGACAAATCGCCAAAAGCTTTCATCCCAAATAAATGAGAGGCTTGACCGGTTCATTGCCAACGAAGAATTTCTACAATTTTTCCCTCATTGCTCGGTTTCACACCTGGACTGGGCACGATCCGATCACCGCCCCATTACGATTCAATTATGTGCAGGAGACGATAAATATGTTGACATGCGTAGGAAGAAGAAAATTTTTCGTTTCGAAGAAGTTTGGACTCAAAGTATTGACTGTAAAAAAATCATTTCTGAGTCTGGGGGATGGATTCATCAAAACTCAATGCCGCCACGTTTGGAATATTGCCTTCAGCGCTGTATAACACAACTACAGAAATGGGGCAAAGATATGTTTCAGTCATCTAATCCCTCTGCAGAATATATTGATGTTGTGTTACAGGATATTCAATGTAAAGTCAGATCAGATGAACGCGAGACTTCTTGA

Protein sequence

MGGAPIRDSQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQFFPHCSVSHLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESGGWIHQNSMPPRLEYCLQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDERETS

Homology

[Close]

BLAST of Lcy08g010600 vs. ExPASy TrEMBL
Match: A0A392MA33 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0005209 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 2   GGAPIRDSQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQF 61
           GG  +  S   LF N L+ C L DL Y G+ FTWTN Q+  S I ERLDRF A+  ++  
Sbjct: 126 GGKDLHSSTTSLFHNTLNQCDLMDLGYHGDKFTWTNNQENESHIKERLDRFCASPSWVTK 185

Query: 62  FPHCSVSHLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESG 121
           FP C+  HL    SDH+PI +   +  D   D   K+ I RFE +W +   C +II E  
Sbjct: 186 FPRCTNYHLLNYSSDHKPILLVFGSNHDFREDTTSKRFIKRFENIWLKDPKCLQIIKEE- 245

Query: 122 GWIHQNSMPPRLEYCLQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDE 178
            W   N +     + LQ+   ++  WG+D + +S    +     LQ+++  + + +
Sbjct: 246 -W---NKVAGATNFKLQQVFEKVHNWGRDTYGNSPKQIKATLTKLQELKTTIPNSD 296

[Close]

BLAST of Lcy08g010600 vs. ExPASy TrEMBL
Match: A0A392M342 (Uncharacterized protein OS=Trifolium medium OX=97028 GN=A2U01_0001812 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 2   GGAPIRDSQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQF 61
           GG  +  S   LF N L+ C L DL Y G+ FTWTN Q+  S I ERLDRF A+  ++  
Sbjct: 35  GGKDLHSSTTSLFHNTLNQCDLMDLGYHGDKFTWTNNQENESHIKERLDRFCASPSWVTK 94

Query: 62  FPHCSVSHLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESG 121
           FP C+  HL    SDH+PI +   +  D   D   K+ I RFE +W +   C +II E  
Sbjct: 95  FPRCTNYHLLNYSSDHKPILLVFGSNHDFREDTTSKRFIKRFENIWLKDPKCLQIIKEE- 154

Query: 122 GWIHQNSMPPRLEYCLQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDE 178
            W   N +     + LQ+   ++  WG+D + +S    +     LQ+++  + + +
Sbjct: 155 -W---NKVAGATNFKLQQVFEKVHNWGRDTYGNSPKQIKATLTKLQELKTTIPNSD 205

[Close]

BLAST of Lcy08g010600 vs. ExPASy TrEMBL
Match: A0A392MAB2 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0005208 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 2   GGAPIRDSQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQF 61
           GG  +  S   LF N L+ C L DL Y G+ FTWTN Q+  S I ERLDRF A+  ++  
Sbjct: 136 GGKDLHSSTTSLFHNTLNQCDLMDLGYHGDKFTWTNNQENESHIKERLDRFCASPSWVTK 195

Query: 62  FPHCSVSHLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESG 121
           FP C+  HL    SDH+PI +   +  D   D   K+ I RFE +W +   C +II E  
Sbjct: 196 FPRCTNYHLLNYSSDHKPILLVFGSNHDFREDTTSKRFIKRFENIWLKDPKCLQIIKEE- 255

Query: 122 GWIHQNSMPPRLEYCLQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDE 178
            W   N +     + LQ+   ++  WG+D + +S    +     LQ+++  + + +
Sbjct: 256 -W---NKVAGATNFKLQQVFEKVHNWGRDTYGNSPKQIKATLTKLQELKTTIPNSD 306

[Close]

BLAST of Lcy08g010600 vs. ExPASy TrEMBL
Match: S8D7A1 (Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_16261 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.5e-22
Identity = 61/167 (36.53%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 14  FRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQFFPHCSVSHLDWA 73
           FRN+LDDCGL DL +SG  FTWTN +   S +  RLDRF+AN+ +   FP  SV HL + 
Sbjct: 29  FRNSLDDCGLMDLGFSGLPFTWTNNRTHPSTVKARLDRFVANQNWTALFPDFSVLHLKFG 88

Query: 74  RSDHRPITIQLCAGDDKYVDMR-RKKKIFRFEEVWTQSIDCKKIISESGGWIHQNSMPPR 133
            SDH PI +QL        + R R +  F+FE +W     CK II +      ++S+ P+
Sbjct: 89  GSDHSPILLQLTIPSSSQPNRRWRPRNFFKFERIWCGKEPCKDIIRDCWA-TPRSSLCPQ 148

Query: 134 LEYC--LQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDE 178
             +   LQ C  +LQ W +  F S     + +   + ++     S+E
Sbjct: 149 ASFLRRLQTCRQKLQGWHRATFGSLKAKIKIVQDQISELMAGHISNE 194

[Close]

BLAST of Lcy08g010600 vs. ExPASy TrEMBL
Match: S8D5C6 (Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_02121 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.4e-21
Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 0


Query: 9   SQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQFFPHCSVS 68
           S + LFRNAL++C L DL + G  FTWTN +   S +  RLDRF+AN  ++   PH SVS
Sbjct: 482 SSMGLFRNALEECDLSDLGFQGYPFTWTNNRTHPSTVKARLDRFVANTSWINIVPHFSVS 541

Query: 69  HLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESGGW-IHQN 128
           HL +  SDH PI +        +  +RR K+ F+FE++W ++  C+ II   G W + ++
Sbjct: 542 HLKFGGSDHCPILLMFKDVVGCHTTLRR-KRFFKFEKIWCENETCRVII--DGCWAVPRS 601

Query: 129 SMPPRLEYC--LQRCITQLQKW 148
           S  P+L     LQ C  +LQ W
Sbjct: 602 SWCPQLSLLRRLQNCRQKLQCW 620

[Close]

BLAST of Lcy08g010600 vs. NCBI nr
Match: XP_042962454.1 (uncharacterized protein LOC122296722 [Carya illinoinensis])

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-22
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 0


Query: 2   GGAPIRDSQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQF 61
           GG P  DSQI  FR+ +++C L+DL +SG  FTW+NR++  + +NE+LDRF+AN  +  F
Sbjct: 151 GGNPKPDSQIAAFRDVVEECELRDLGFSGYKFTWSNRREGHAYVNEQLDRFLANSSWWNF 210

Query: 62  FPHCSVSHLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESG 121
           +P   V H   A SDH PI I+L  GD       +KKK+FRFEE+W  +  C+ II +  
Sbjct: 211 YPQAKVIHGLVAYSDHLPIWIEL-EGDTGI--PVKKKKLFRFEEMWIGNSQCEAIIKDQW 270

Query: 122 GWIHQNSMPPRLEYCLQRCITQLQKWGKDMF 153
              H +S    +E  ++    +LQ W  + F
Sbjct: 271 RMGHAHSSMKEVEGMIRESGVKLQLWNSNCF 298

[Close]

BLAST of Lcy08g010600 vs. NCBI nr
Match: MCH84376.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 115.2 bits (287), Expect = 6.1e-22
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 2   GGAPIRDSQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQF 61
           GG  +  S   LF N L+ C L DL Y G+ FTWTN Q+  S I ERLDRF A+  ++  
Sbjct: 136 GGKDLHSSTTSLFHNTLNQCDLMDLGYHGDKFTWTNNQENESHIKERLDRFCASPSWVTK 195

Query: 62  FPHCSVSHLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESG 121
           FP C+  HL    SDH+PI +   +  D   D   K+ I RFE +W +   C +II E  
Sbjct: 196 FPRCTNYHLLNYSSDHKPILLVFGSNHDFREDTTSKRFIKRFENIWLKDPKCLQIIKEE- 255

Query: 122 GWIHQNSMPPRLEYCLQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDE 178
            W   N +     + LQ+   ++  WG+D + +S    +     LQ+++  + + +
Sbjct: 256 -W---NKVAGATNFKLQQVFEKVHNWGRDTYGNSPKQIKATLTKLQELKTTIPNSD 306

[Close]

BLAST of Lcy08g010600 vs. NCBI nr
Match: MCH84377.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 115.2 bits (287), Expect = 6.1e-22
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 2   GGAPIRDSQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQF 61
           GG  +  S   LF N L+ C L DL Y G+ FTWTN Q+  S I ERLDRF A+  ++  
Sbjct: 126 GGKDLHSSTTSLFHNTLNQCDLMDLGYHGDKFTWTNNQENESHIKERLDRFCASPSWVTK 185

Query: 62  FPHCSVSHLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESG 121
           FP C+  HL    SDH+PI +   +  D   D   K+ I RFE +W +   C +II E  
Sbjct: 186 FPRCTNYHLLNYSSDHKPILLVFGSNHDFREDTTSKRFIKRFENIWLKDPKCLQIIKEE- 245

Query: 122 GWIHQNSMPPRLEYCLQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDE 178
            W   N +     + LQ+   ++  WG+D + +S    +     LQ+++  + + +
Sbjct: 246 -W---NKVAGATNFKLQQVFEKVHNWGRDTYGNSPKQIKATLTKLQELKTTIPNSD 296

[Close]

BLAST of Lcy08g010600 vs. NCBI nr
Match: MCH81034.1 (hypothetical protein [Trifolium medium])

HSP 1 Score: 115.2 bits (287), Expect = 6.1e-22
Identity = 60/176 (34.09%), Postives = 90/176 (51.14%), Query Frame = 0


Query: 2   GGAPIRDSQIDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQF 61
           GG  +  S   LF N L+ C L DL Y G+ FTWTN Q+  S I ERLDRF A+  ++  
Sbjct: 35  GGKDLHSSTTSLFHNTLNQCDLMDLGYHGDKFTWTNNQENESHIKERLDRFCASPSWVTK 94

Query: 62  FPHCSVSHLDWARSDHRPITIQLCAGDDKYVDMRRKKKIFRFEEVWTQSIDCKKIISESG 121
           FP C+  HL    SDH+PI +   +  D   D   K+ I RFE +W +   C +II E  
Sbjct: 95  FPRCTNYHLLNYSSDHKPILLVFGSNHDFREDTTSKRFIKRFENIWLKDPKCLQIIKEE- 154

Query: 122 GWIHQNSMPPRLEYCLQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDE 178
            W   N +     + LQ+   ++  WG+D + +S    +     LQ+++  + + +
Sbjct: 155 -W---NKVAGATNFKLQQVFEKVHNWGRDTYGNSPKQIKATLTKLQELKTTIPNSD 205

[Close]

BLAST of Lcy08g010600 vs. NCBI nr
Match: EPS58553.1 (hypothetical protein M569_16261, partial [Genlisea aurea])

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-21
Identity = 61/167 (36.53%), Postives = 88/167 (52.69%), Query Frame = 0


Query: 14  FRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQFFPHCSVSHLDWA 73
           FRN+LDDCGL DL +SG  FTWTN +   S +  RLDRF+AN+ +   FP  SV HL + 
Sbjct: 29  FRNSLDDCGLMDLGFSGLPFTWTNNRTHPSTVKARLDRFVANQNWTALFPDFSVLHLKFG 88

Query: 74  RSDHRPITIQLCAGDDKYVDMR-RKKKIFRFEEVWTQSIDCKKIISESGGWIHQNSMPPR 133
            SDH PI +QL        + R R +  F+FE +W     CK II +      ++S+ P+
Sbjct: 89  GSDHSPILLQLTIPSSSQPNRRWRPRNFFKFERIWCGKEPCKDIIRDCWA-TPRSSLCPQ 148

Query: 134 LEYC--LQRCITQLQKWGKDMFQSSNPSAEYIDVVLQDIQCKVRSDE 178
             +   LQ C  +LQ W +  F S     + +   + ++     S+E
Sbjct: 149 ASFLRRLQTCRQKLQGWHRATFGSLKAKIKIVQDQISELMAGHISNE 194

[Close]

BLAST of Lcy08g010600 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.2e-04
Identity = 31/93 (33.33%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 11  IDLFRNALDDCGLQDLDYSGEIFTWTNRQKLSSQINERLDRFIANEEFLQFFPHCSVSHL 70
           ++ F+N L D  L D+   G  +TW+N Q   + I  +LDR IAN ++   FP       
Sbjct: 249 LEEFQNCLRDSDLVDIPSRGVHYTWSNHQD-DNPIIRKLDRAIANGDWFSSFPSAIAVFE 308

Query: 71  DWARSDHRPITIQLCAGDDKYVDMRRKKKIFRF 104
               SDH P  I L          +R KK FR+
Sbjct: 309 LSGVSDHSPCIIIL------ENLPKRSKKCFRY 334

The following BLAST results are available for this feature:

BLAST of Lcy08g010600 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g010600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A392MA33	2.9e-22	34.09	Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0005209...	[more]
A0A392M342	2.9e-22	34.09	Uncharacterized protein OS=Trifolium medium OX=97028 GN=A2U01_0001812 PE=4 SV=1	[more]
A0A392MAB2	2.9e-22	34.09	Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0005208...	[more]
S8D7A1	8.5e-22	36.53	Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_16261 PE=...	[more]
S8D5C6	9.4e-21	40.85	Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_02121 PE=...	[more]

BLAST of Lcy08g010600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042962454.1	1.6e-22	40.40	uncharacterized protein LOC122296722 [Carya illinoinensis]	[more]
MCH84376.1	6.1e-22	34.09	hypothetical protein [Trifolium medium]	[more]
MCH84377.1	6.1e-22	34.09	hypothetical protein [Trifolium medium]	[more]
MCH81034.1	6.1e-22	34.09	hypothetical protein [Trifolium medium]	[more]
EPS58553.1	1.8e-21	36.53	hypothetical protein M569_16261, partial [Genlisea aurea]	[more]

BLAST of Lcy08g010600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	1.2e-04	33.33	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 4..84 e-value: 3.4E-9 score: 38.8
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 10..84
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 2..170
None	No IPR available	PANTHER	PTHR33710:SF40	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN	coord: 2..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g010600.1	Lcy08g010600.1	mRNA