Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAACGTGGAATCATTCAATTCAAATCAACAAGAGTATGATATGAATCCATTGAATGTGAGTGAAATGCCCTCGGTGACATCCCTAGACAACGACGACTGTAACCCATGACATTCATACGTGAGGGAACAGTGGGGTCGAATTGAGCAAGAATTTCTATGGCAAGGATAGGCGCAATCGAGTGGAGTGGTCCATAATGAGGCAGATGCTAAGGTCGTATGTACTGAGACAGTCGCTGGTGTTGTACCTTCGATACAAAGGGTTCAATCGAGTCATGTTATAGTTGAATATGAGTTATTTCATAATCAAGTTACGAGGGTTACTGGTCTTTCTGTAGTATGCACTACTAGTCAGACTTAAACTGCACCAAGTGGATCACTTATTTTGCATGGACAGTCTTCCTCGAGAGTGGATGTCCGTGAAGGTAAGATCTTCCTCTTCAAAGAGGACTTGAAAACAAGGCTAGCAGTTCTAATCATGAACAAAAACTTTGAATTCAGGGTGAAGAAGTCGTGCAAGGACTTATATACGGTCCGATGTGTGAGTGAAAGCTGTAAATGGAGGGTGCGTGCAGTTAAGTTGGATGGTTGTAAGATATTTAAGATCAATAAGTACGTAAGTGAGCACACATGCTCCATTCGGATCTTGAACCACGACCATACACAAGCCAGTGTCGGAGTCGTTGGACAAGTGATCAAAGATAAGTTTATGGGATCCAGGCGTACATACAAACTACGACACATCATTGAGGACATGATGAAGAATATGGGGTTAACATTAGCTACGACAAAACATGGCGTGCGGGTACTCTAG
mRNA sequence
ATGTCGAACGTGGAATCATTCAATTCAAATCAACAAGAGTATGATATGAATCCATTGAATTCTTCCTCGAGAGTGGATGTCCGTGAAGGTAAGATCTTCCTCTTCAAAGAGGACTTGAAAACAAGGCTAGCAGTTCTAATCATGAACAAAAACTTTGAATTCAGGGTGAAGAAGTCGTGCAAGGACTTATATACGGTCCGATGTGTGAGTGAAAGCTGTAAATGGAGGGTGCGTGCAGTTAAGTTGGATGGTTGTAAGATATTTAAGATCAATAAGTACGTAAGTGAGCACACATGCTCCATTCGGATCTTGAACCACGACCATACACAAGCCAGTGTCGGAGTCGTTGGACAAGTGATCAAAGATAAGTTTATGGGATCCAGGCGTACATACAAACTACGACACATCATTGAGGACATGATGAAGAATATGGGGTTAACATTAGCTACGACAAAACATGGCGTGCGGGTACTCTAG
Coding sequence (CDS)
ATGTCGAACGTGGAATCATTCAATTCAAATCAACAAGAGTATGATATGAATCCATTGAATTCTTCCTCGAGAGTGGATGTCCGTGAAGGTAAGATCTTCCTCTTCAAAGAGGACTTGAAAACAAGGCTAGCAGTTCTAATCATGAACAAAAACTTTGAATTCAGGGTGAAGAAGTCGTGCAAGGACTTATATACGGTCCGATGTGTGAGTGAAAGCTGTAAATGGAGGGTGCGTGCAGTTAAGTTGGATGGTTGTAAGATATTTAAGATCAATAAGTACGTAAGTGAGCACACATGCTCCATTCGGATCTTGAACCACGACCATACACAAGCCAGTGTCGGAGTCGTTGGACAAGTGATCAAAGATAAGTTTATGGGATCCAGGCGTACATACAAACTACGACACATCATTGAGGACATGATGAAGAATATGGGGTTAACATTAGCTACGACAAAACATGGCGTGCGGGTACTCTAG
Protein sequence
MSNVESFNSNQQEYDMNPLNSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTKHGVRVL
Homology
BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match:
A0A5A7V528 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00310 PE=4 SV=1)
HSP 1 Score: 139.8 bits (351), Expect = 9.7e-30
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0
Query: 21 SSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAV 80
SS+ ++ G+IF K DL RL+VL MNKNF+F VKKS K+++ VRC+ + C WR+RAV
Sbjct: 304 SSTSEELDVGQIFFCKRDLSMRLSVLAMNKNFQFVVKKSTKEVFFVRCIDKKCGWRLRAV 363
Query: 81 KLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDM 140
+L IFKI KYV H+CS+ LN DH QA VVG++IK KF G R YK R IIEDM
Sbjct: 364 RLKDSNIFKIKKYVKVHSCSLEFLNRDHRQAKSWVVGELIKSKFKGPGRIYKQRDIIEDM 423
Query: 141 MKNMGLTLATTK 153
++ G+ ++ K
Sbjct: 424 RQDYGINMSYEK 435
BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match:
A0A6J1DPC2 (uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 4.8e-29
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 0
Query: 3 NVESFNSNQQEYDMNPL---NSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKS 62
N ES + Q++Y + SS+ + G+IF K DL +L+V+ M +NFEFRVKKS
Sbjct: 159 NYESDSVGQKKYMKKNVWSEGSSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKS 218
Query: 63 CKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQV 122
K+L + CV E+CKWR+RA+KL G IF+I+KYV+ H+CS+ ++N H QA VVG++
Sbjct: 219 TKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMNRHHRQAKAWVVGEL 278
Query: 123 IKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTK 153
IK KF G R YK R IIEDM ++ G+ ++ K
Sbjct: 279 IKSKFNGVRCQYKPREIIEDMRQDYGINMSYEK 311
BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match:
A0A6J1DRN0 (uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)
HSP 1 Score: 137.5 bits (345), Expect = 4.8e-29
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 0
Query: 3 NVESFNSNQQEYDMNPL---NSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKS 62
N ES + Q++Y + SS+ + G+IF K DL +L+V+ M +NFEFRVKKS
Sbjct: 159 NYESDSVGQKKYMKKNVWSEGSSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKS 218
Query: 63 CKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQV 122
K+L + CV E+CKWR+RA+KL G IF+I+KYV+ H+CS+ ++N H QA VVG++
Sbjct: 219 TKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMNRHHRQAKAWVVGEL 278
Query: 123 IKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTK 153
IK KF G R YK R IIEDM ++ G+ ++ K
Sbjct: 279 IKSKFNGVRCQYKPREIIEDMRQDYGINMSYEK 311
BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match:
A0A5A7VNP6 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001920 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 8.2e-29
Identity = 67/132 (50.76%), Postives = 89/132 (67.42%), Query Frame = 0
Query: 21 SSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAV 80
SS+ ++ G+IF K DL RL+VL M KNF+F VKKS K++ VRC+ C WR+RAV
Sbjct: 229 SSTSEELDVGQIFFCKRDLSMRLSVLAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAV 288
Query: 81 KLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDM 140
+L IFKI KYV H+CS++ LN DH QA VVG++IK KF G+ R YK R IIEDM
Sbjct: 289 RLKDSNIFKIKKYVKVHSCSLKFLNRDHRQAKSWVVGELIKSKFKGAGRIYKPRDIIEDM 348
Query: 141 MKNMGLTLATTK 153
++ G+ ++ K
Sbjct: 349 RQDYGINMSYEK 360
BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match:
A0A6J1DRC3 (uncharacterized protein LOC111023629 OS=Momordica charantia OX=3673 GN=LOC111023629 PE=4 SV=1)
HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 67/153 (43.79%), Postives = 101/153 (66.01%), Query Frame = 0
Query: 3 NVESFNSNQQEY---DMNPLNSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKS 62
N ES ++ Q+ Y ++ S+ + G +F K +L +L+++ MN+NFEFRVKKS
Sbjct: 168 NYESKSTRQKTYMGKTVSLEGRSTNDEFEVGNLFFNKRELFMKLSIMAMNRNFEFRVKKS 227
Query: 63 CKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQV 122
K ++ V C +CKWR+RAV+LDG +IFKI+KYV+ H+CS+ ILNHDH QA +V ++
Sbjct: 228 TKQIFYVTCTDNNCKWRMRAVRLDGSEIFKISKYVNFHSCSLHILNHDHRQAKAWIVEEL 287
Query: 123 IKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTK 153
IK K+ G R K + IIEDM ++ G+ ++ K
Sbjct: 288 IKSKYSGIGRQCKPKEIIEDMRQDYGINMSYEK 320
BLAST of Lcy08g010190 vs. NCBI nr
Match:
XP_038902336.1 (uncharacterized protein LOC120088970 [Benincasa hispida])
HSP 1 Score: 164.9 bits (416), Expect = 5.8e-37
Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 0
Query: 18 PLNSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRV 77
P SSS DV +IFL K DLK RL++L +N NFE++V+KS K L+TV+C+ ++CKW +
Sbjct: 36 PGTSSSETDVEVDQIFLSKSDLKMRLSILCINNNFEYKVRKSTKSLFTVKCIEDNCKWSL 95
Query: 78 RAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHII 137
RAVK+ GC IFKI KY+ HTC I ILNHDH QA++ VVG++IKDKF G R YK RHI+
Sbjct: 96 RAVKISGCDIFKIMKYMRSHTCFIGILNHDHRQATIVVVGELIKDKFTGIGRVYKPRHIV 155
Query: 138 EDMMKNMGLTLATTK 153
EDM K G+ ++ K
Sbjct: 156 EDMKKEYGINISYDK 170
BLAST of Lcy08g010190 vs. NCBI nr
Match:
XP_038905828.1 (uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 uncharacterized protein LOC120091780 [Benincasa hispida])
HSP 1 Score: 155.6 bits (392), Expect = 3.5e-34
Identity = 76/144 (52.78%), Postives = 106/144 (73.61%), Query Frame = 0
Query: 6 SFNSNQQEYDMNPLNSSSRV-DVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLY 65
S +SN + + P SS + DV G++FL K++LK RL++L +NKNFEF+V KS K L+
Sbjct: 108 SVSSNHRTELIMPDTSSFGIEDVEVGQLFLSKKNLKMRLSILSINKNFEFKVGKSTKSLF 167
Query: 66 TVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKF 125
T++C+ ++CKW +RAVK++G IFKI KY S HTCSI ILNHDH Q + VVGQ+I+DKF
Sbjct: 168 TIKCIGKTCKWSLRAVKMEGSDIFKITKYCSSHTCSIGILNHDHRQVTATVVGQLIEDKF 227
Query: 126 MGSRRTYKLRHIIEDMMKNMGLTL 149
MG R YK HI+EDM ++ G+++
Sbjct: 228 MGIGRIYKPCHIVEDMRRDYGVSI 251
BLAST of Lcy08g010190 vs. NCBI nr
Match:
XP_038902318.1 (uncharacterized protein LOC120088954 [Benincasa hispida])
HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 70/132 (53.03%), Postives = 94/132 (71.21%), Query Frame = 0
Query: 21 SSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAV 80
SSS DV G+IFL K DLK RL++L + NFE++V+KS K L+TV+C+ ++CKW + AV
Sbjct: 104 SSSETDVEVGQIFLSKIDLKMRLSILYIINNFEYKVRKSTKSLFTVKCIEDNCKWILHAV 163
Query: 81 KLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDM 140
K+ C IFKI K++ HTCSI ILNHDH QA+ VVG++IKDKF G YK HI++DM
Sbjct: 164 KIPECDIFKITKHIRSHTCSIGILNHDHRQATAAVVGELIKDKFTGIGCVYKPCHIVKDM 223
Query: 141 MKNMGLTLATTK 153
K G+ ++ K
Sbjct: 224 RKEYGVNISYDK 235
BLAST of Lcy08g010190 vs. NCBI nr
Match:
KAA0060809.1 (MuDRA-like transposase [Cucumis melo var. makuwa])
HSP 1 Score: 139.8 bits (351), Expect = 2.0e-29
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0
Query: 21 SSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAV 80
SS+ ++ G+IF K DL RL+VL MNKNF+F VKKS K+++ VRC+ + C WR+RAV
Sbjct: 304 SSTSEELDVGQIFFCKRDLSMRLSVLAMNKNFQFVVKKSTKEVFFVRCIDKKCGWRLRAV 363
Query: 81 KLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDM 140
+L IFKI KYV H+CS+ LN DH QA VVG++IK KF G R YK R IIEDM
Sbjct: 364 RLKDSNIFKIKKYVKVHSCSLEFLNRDHRQAKSWVVGELIKSKFKGPGRIYKQRDIIEDM 423
Query: 141 MKNMGLTLATTK 153
++ G+ ++ K
Sbjct: 424 RQDYGINMSYEK 435
BLAST of Lcy08g010190 vs. NCBI nr
Match:
XP_022155431.1 (uncharacterized protein LOC111022579 isoform X1 [Momordica charantia])
HSP 1 Score: 137.5 bits (345), Expect = 1.0e-28
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 0
Query: 3 NVESFNSNQQEYDMNPL---NSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKS 62
N ES + Q++Y + SS+ + G+IF K DL +L+V+ M +NFEFRVKKS
Sbjct: 159 NYESDSVGQKKYMKKNVWSEGSSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKS 218
Query: 63 CKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQV 122
K+L + CV E+CKWR+RA+KL G IF+I+KYV+ H+CS+ ++N H QA VVG++
Sbjct: 219 TKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMNRHHRQAKAWVVGEL 278
Query: 123 IKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTK 153
IK KF G R YK R IIEDM ++ G+ ++ K
Sbjct: 279 IKSKFNGVRCQYKPREIIEDMRQDYGINMSYEK 311
BLAST of Lcy08g010190 vs. TAIR 10
Match:
AT1G64260.1 (MuDR family transposase )
HSP 1 Score: 52.4 bits (124), Expect = 3.9e-07
Identity = 25/96 (26.04%), Postives = 50/96 (52.08%), Query Frame = 0
Query: 26 DVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAVKLDGC 85
D+ G F +++LK + + + V+++ K++YT CV CKW +RA +++
Sbjct: 184 DMHLGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEH 243
Query: 86 KIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIK 122
+ +I KY HTCS N ++ + + +V++
Sbjct: 244 GLVEITKYTGPHTCSHEYPNDFESEFAADEIERVVR 279
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V528 | 9.7e-30 | 51.52 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... | [more] |
A0A6J1DPC2 | 4.8e-29 | 46.41 | uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
A0A6J1DRN0 | 4.8e-29 | 46.41 | uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 G... | [more] |
A0A5A7VNP6 | 8.2e-29 | 50.76 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... | [more] |
A0A6J1DRC3 | 1.8e-28 | 43.79 | uncharacterized protein LOC111023629 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
Match Name | E-value | Identity | Description | |
XP_038902336.1 | 5.8e-37 | 56.30 | uncharacterized protein LOC120088970 [Benincasa hispida] | [more] |
XP_038905828.1 | 3.5e-34 | 52.78 | uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 unchara... | [more] |
XP_038902318.1 | 2.5e-32 | 53.03 | uncharacterized protein LOC120088954 [Benincasa hispida] | [more] |
KAA0060809.1 | 2.0e-29 | 51.52 | MuDRA-like transposase [Cucumis melo var. makuwa] | [more] |
XP_022155431.1 | 1.0e-28 | 46.41 | uncharacterized protein LOC111022579 isoform X1 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
AT1G64260.1 | 3.9e-07 | 26.04 | MuDR family transposase | [more] |