Lcy08g010190 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g010190
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionMuDRA-like transposase
LocationChr08: 30118073 .. 30118888 (-)
RNA-Seq ExpressionLcy08g010190
SyntenyLcy08g010190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAACGTGGAATCATTCAATTCAAATCAACAAGAGTATGATATGAATCCATTGAATGTGAGTGAAATGCCCTCGGTGACATCCCTAGACAACGACGACTGTAACCCATGACATTCATACGTGAGGGAACAGTGGGGTCGAATTGAGCAAGAATTTCTATGGCAAGGATAGGCGCAATCGAGTGGAGTGGTCCATAATGAGGCAGATGCTAAGGTCGTATGTACTGAGACAGTCGCTGGTGTTGTACCTTCGATACAAAGGGTTCAATCGAGTCATGTTATAGTTGAATATGAGTTATTTCATAATCAAGTTACGAGGGTTACTGGTCTTTCTGTAGTATGCACTACTAGTCAGACTTAAACTGCACCAAGTGGATCACTTATTTTGCATGGACAGTCTTCCTCGAGAGTGGATGTCCGTGAAGGTAAGATCTTCCTCTTCAAAGAGGACTTGAAAACAAGGCTAGCAGTTCTAATCATGAACAAAAACTTTGAATTCAGGGTGAAGAAGTCGTGCAAGGACTTATATACGGTCCGATGTGTGAGTGAAAGCTGTAAATGGAGGGTGCGTGCAGTTAAGTTGGATGGTTGTAAGATATTTAAGATCAATAAGTACGTAAGTGAGCACACATGCTCCATTCGGATCTTGAACCACGACCATACACAAGCCAGTGTCGGAGTCGTTGGACAAGTGATCAAAGATAAGTTTATGGGATCCAGGCGTACATACAAACTACGACACATCATTGAGGACATGATGAAGAATATGGGGTTAACATTAGCTACGACAAAACATGGCGTGCGGGTACTCTAG

mRNA sequence

ATGTCGAACGTGGAATCATTCAATTCAAATCAACAAGAGTATGATATGAATCCATTGAATTCTTCCTCGAGAGTGGATGTCCGTGAAGGTAAGATCTTCCTCTTCAAAGAGGACTTGAAAACAAGGCTAGCAGTTCTAATCATGAACAAAAACTTTGAATTCAGGGTGAAGAAGTCGTGCAAGGACTTATATACGGTCCGATGTGTGAGTGAAAGCTGTAAATGGAGGGTGCGTGCAGTTAAGTTGGATGGTTGTAAGATATTTAAGATCAATAAGTACGTAAGTGAGCACACATGCTCCATTCGGATCTTGAACCACGACCATACACAAGCCAGTGTCGGAGTCGTTGGACAAGTGATCAAAGATAAGTTTATGGGATCCAGGCGTACATACAAACTACGACACATCATTGAGGACATGATGAAGAATATGGGGTTAACATTAGCTACGACAAAACATGGCGTGCGGGTACTCTAG

Coding sequence (CDS)

ATGTCGAACGTGGAATCATTCAATTCAAATCAACAAGAGTATGATATGAATCCATTGAATTCTTCCTCGAGAGTGGATGTCCGTGAAGGTAAGATCTTCCTCTTCAAAGAGGACTTGAAAACAAGGCTAGCAGTTCTAATCATGAACAAAAACTTTGAATTCAGGGTGAAGAAGTCGTGCAAGGACTTATATACGGTCCGATGTGTGAGTGAAAGCTGTAAATGGAGGGTGCGTGCAGTTAAGTTGGATGGTTGTAAGATATTTAAGATCAATAAGTACGTAAGTGAGCACACATGCTCCATTCGGATCTTGAACCACGACCATACACAAGCCAGTGTCGGAGTCGTTGGACAAGTGATCAAAGATAAGTTTATGGGATCCAGGCGTACATACAAACTACGACACATCATTGAGGACATGATGAAGAATATGGGGTTAACATTAGCTACGACAAAACATGGCGTGCGGGTACTCTAG

Protein sequence

MSNVESFNSNQQEYDMNPLNSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTKHGVRVL
Homology
BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match: A0A5A7V528 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00310 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 9.7e-30
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 21  SSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAV 80
           SS+  ++  G+IF  K DL  RL+VL MNKNF+F VKKS K+++ VRC+ + C WR+RAV
Sbjct: 304 SSTSEELDVGQIFFCKRDLSMRLSVLAMNKNFQFVVKKSTKEVFFVRCIDKKCGWRLRAV 363

Query: 81  KLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDM 140
           +L    IFKI KYV  H+CS+  LN DH QA   VVG++IK KF G  R YK R IIEDM
Sbjct: 364 RLKDSNIFKIKKYVKVHSCSLEFLNRDHRQAKSWVVGELIKSKFKGPGRIYKQRDIIEDM 423

Query: 141 MKNMGLTLATTK 153
            ++ G+ ++  K
Sbjct: 424 RQDYGINMSYEK 435

BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match: A0A6J1DPC2 (uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.8e-29
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 0

Query: 3   NVESFNSNQQEYDMNPL---NSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKS 62
           N ES +  Q++Y    +    SS+  +   G+IF  K DL  +L+V+ M +NFEFRVKKS
Sbjct: 159 NYESDSVGQKKYMKKNVWSEGSSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKS 218

Query: 63  CKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQV 122
            K+L  + CV E+CKWR+RA+KL G  IF+I+KYV+ H+CS+ ++N  H QA   VVG++
Sbjct: 219 TKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMNRHHRQAKAWVVGEL 278

Query: 123 IKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTK 153
           IK KF G R  YK R IIEDM ++ G+ ++  K
Sbjct: 279 IKSKFNGVRCQYKPREIIEDMRQDYGINMSYEK 311

BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match: A0A6J1DRN0 (uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022579 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.8e-29
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 0

Query: 3   NVESFNSNQQEYDMNPL---NSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKS 62
           N ES +  Q++Y    +    SS+  +   G+IF  K DL  +L+V+ M +NFEFRVKKS
Sbjct: 159 NYESDSVGQKKYMKKNVWSEGSSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKS 218

Query: 63  CKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQV 122
            K+L  + CV E+CKWR+RA+KL G  IF+I+KYV+ H+CS+ ++N  H QA   VVG++
Sbjct: 219 TKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMNRHHRQAKAWVVGEL 278

Query: 123 IKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTK 153
           IK KF G R  YK R IIEDM ++ G+ ++  K
Sbjct: 279 IKSKFNGVRCQYKPREIIEDMRQDYGINMSYEK 311

BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match: A0A5A7VNP6 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001920 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 8.2e-29
Identity = 67/132 (50.76%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 21  SSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAV 80
           SS+  ++  G+IF  K DL  RL+VL M KNF+F VKKS K++  VRC+   C WR+RAV
Sbjct: 229 SSTSEELDVGQIFFCKRDLSMRLSVLAMKKNFQFVVKKSTKEVLFVRCIDNKCGWRLRAV 288

Query: 81  KLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDM 140
           +L    IFKI KYV  H+CS++ LN DH QA   VVG++IK KF G+ R YK R IIEDM
Sbjct: 289 RLKDSNIFKIKKYVKVHSCSLKFLNRDHRQAKSWVVGELIKSKFKGAGRIYKPRDIIEDM 348

Query: 141 MKNMGLTLATTK 153
            ++ G+ ++  K
Sbjct: 349 RQDYGINMSYEK 360

BLAST of Lcy08g010190 vs. ExPASy TrEMBL
Match: A0A6J1DRC3 (uncharacterized protein LOC111023629 OS=Momordica charantia OX=3673 GN=LOC111023629 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 67/153 (43.79%), Postives = 101/153 (66.01%), Query Frame = 0

Query: 3   NVESFNSNQQEY---DMNPLNSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKS 62
           N ES ++ Q+ Y    ++    S+  +   G +F  K +L  +L+++ MN+NFEFRVKKS
Sbjct: 168 NYESKSTRQKTYMGKTVSLEGRSTNDEFEVGNLFFNKRELFMKLSIMAMNRNFEFRVKKS 227

Query: 63  CKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQV 122
            K ++ V C   +CKWR+RAV+LDG +IFKI+KYV+ H+CS+ ILNHDH QA   +V ++
Sbjct: 228 TKQIFYVTCTDNNCKWRMRAVRLDGSEIFKISKYVNFHSCSLHILNHDHRQAKAWIVEEL 287

Query: 123 IKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTK 153
           IK K+ G  R  K + IIEDM ++ G+ ++  K
Sbjct: 288 IKSKYSGIGRQCKPKEIIEDMRQDYGINMSYEK 320

BLAST of Lcy08g010190 vs. NCBI nr
Match: XP_038902336.1 (uncharacterized protein LOC120088970 [Benincasa hispida])

HSP 1 Score: 164.9 bits (416), Expect = 5.8e-37
Identity = 76/135 (56.30%), Postives = 99/135 (73.33%), Query Frame = 0

Query: 18  PLNSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRV 77
           P  SSS  DV   +IFL K DLK RL++L +N NFE++V+KS K L+TV+C+ ++CKW +
Sbjct: 36  PGTSSSETDVEVDQIFLSKSDLKMRLSILCINNNFEYKVRKSTKSLFTVKCIEDNCKWSL 95

Query: 78  RAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHII 137
           RAVK+ GC IFKI KY+  HTC I ILNHDH QA++ VVG++IKDKF G  R YK RHI+
Sbjct: 96  RAVKISGCDIFKIMKYMRSHTCFIGILNHDHRQATIVVVGELIKDKFTGIGRVYKPRHIV 155

Query: 138 EDMMKNMGLTLATTK 153
           EDM K  G+ ++  K
Sbjct: 156 EDMKKEYGINISYDK 170

BLAST of Lcy08g010190 vs. NCBI nr
Match: XP_038905828.1 (uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 uncharacterized protein LOC120091780 [Benincasa hispida])

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-34
Identity = 76/144 (52.78%), Postives = 106/144 (73.61%), Query Frame = 0

Query: 6   SFNSNQQEYDMNPLNSSSRV-DVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLY 65
           S +SN +   + P  SS  + DV  G++FL K++LK RL++L +NKNFEF+V KS K L+
Sbjct: 108 SVSSNHRTELIMPDTSSFGIEDVEVGQLFLSKKNLKMRLSILSINKNFEFKVGKSTKSLF 167

Query: 66  TVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKF 125
           T++C+ ++CKW +RAVK++G  IFKI KY S HTCSI ILNHDH Q +  VVGQ+I+DKF
Sbjct: 168 TIKCIGKTCKWSLRAVKMEGSDIFKITKYCSSHTCSIGILNHDHRQVTATVVGQLIEDKF 227

Query: 126 MGSRRTYKLRHIIEDMMKNMGLTL 149
           MG  R YK  HI+EDM ++ G+++
Sbjct: 228 MGIGRIYKPCHIVEDMRRDYGVSI 251

BLAST of Lcy08g010190 vs. NCBI nr
Match: XP_038902318.1 (uncharacterized protein LOC120088954 [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 70/132 (53.03%), Postives = 94/132 (71.21%), Query Frame = 0

Query: 21  SSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAV 80
           SSS  DV  G+IFL K DLK RL++L +  NFE++V+KS K L+TV+C+ ++CKW + AV
Sbjct: 104 SSSETDVEVGQIFLSKIDLKMRLSILYIINNFEYKVRKSTKSLFTVKCIEDNCKWILHAV 163

Query: 81  KLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDM 140
           K+  C IFKI K++  HTCSI ILNHDH QA+  VVG++IKDKF G    YK  HI++DM
Sbjct: 164 KIPECDIFKITKHIRSHTCSIGILNHDHRQATAAVVGELIKDKFTGIGCVYKPCHIVKDM 223

Query: 141 MKNMGLTLATTK 153
            K  G+ ++  K
Sbjct: 224 RKEYGVNISYDK 235

BLAST of Lcy08g010190 vs. NCBI nr
Match: KAA0060809.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 2.0e-29
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0

Query: 21  SSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAV 80
           SS+  ++  G+IF  K DL  RL+VL MNKNF+F VKKS K+++ VRC+ + C WR+RAV
Sbjct: 304 SSTSEELDVGQIFFCKRDLSMRLSVLAMNKNFQFVVKKSTKEVFFVRCIDKKCGWRLRAV 363

Query: 81  KLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIKDKFMGSRRTYKLRHIIEDM 140
           +L    IFKI KYV  H+CS+  LN DH QA   VVG++IK KF G  R YK R IIEDM
Sbjct: 364 RLKDSNIFKIKKYVKVHSCSLEFLNRDHRQAKSWVVGELIKSKFKGPGRIYKQRDIIEDM 423

Query: 141 MKNMGLTLATTK 153
            ++ G+ ++  K
Sbjct: 424 RQDYGINMSYEK 435

BLAST of Lcy08g010190 vs. NCBI nr
Match: XP_022155431.1 (uncharacterized protein LOC111022579 isoform X1 [Momordica charantia])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-28
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 0

Query: 3   NVESFNSNQQEYDMNPL---NSSSRVDVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKS 62
           N ES +  Q++Y    +    SS+  +   G+IF  K DL  +L+V+ M +NFEFRVKKS
Sbjct: 159 NYESDSVGQKKYMKKNVWSEGSSTNDEFDVGQIFFGKRDLSMKLSVMAMKRNFEFRVKKS 218

Query: 63  CKDLYTVRCVSESCKWRVRAVKLDGCKIFKINKYVSEHTCSIRILNHDHTQASVGVVGQV 122
            K+L  + CV E+CKWR+RA+KL G  IF+I+KYV+ H+CS+ ++N  H QA   VVG++
Sbjct: 219 TKELIYIVCVDENCKWRIRALKLGGSDIFRISKYVNVHSCSLDLMNRHHRQAKAWVVGEL 278

Query: 123 IKDKFMGSRRTYKLRHIIEDMMKNMGLTLATTK 153
           IK KF G R  YK R IIEDM ++ G+ ++  K
Sbjct: 279 IKSKFNGVRCQYKPREIIEDMRQDYGINMSYEK 311

BLAST of Lcy08g010190 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-07
Identity = 25/96 (26.04%), Postives = 50/96 (52.08%), Query Frame = 0

Query: 26  DVREGKIFLFKEDLKTRLAVLIMNKNFEFRVKKSCKDLYTVRCVSESCKWRVRAVKLDGC 85
           D+  G  F  +++LK  +    + +     V+++ K++YT  CV   CKW +RA +++  
Sbjct: 184 DMHLGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEH 243

Query: 86  KIFKINKYVSEHTCSIRILNHDHTQASVGVVGQVIK 122
            + +I KY   HTCS    N   ++ +   + +V++
Sbjct: 244 GLVEITKYTGPHTCSHEYPNDFESEFAADEIERVVR 279

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V5289.7e-3051.52MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A6J1DPC24.8e-2946.41uncharacterized protein LOC111022579 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DRN04.8e-2946.41uncharacterized protein LOC111022579 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5A7VNP68.2e-2950.76MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A6J1DRC31.8e-2843.79uncharacterized protein LOC111023629 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
Match NameE-valueIdentityDescription
XP_038902336.15.8e-3756.30uncharacterized protein LOC120088970 [Benincasa hispida][more]
XP_038905828.13.5e-3452.78uncharacterized protein LOC120091780 [Benincasa hispida] >XP_038905829.1 unchara... [more]
XP_038902318.12.5e-3253.03uncharacterized protein LOC120088954 [Benincasa hispida][more]
KAA0060809.12.0e-2951.52MuDRA-like transposase [Cucumis melo var. makuwa][more]
XP_022155431.11.0e-2846.41uncharacterized protein LOC111022579 isoform X1 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT1G64260.13.9e-0726.04MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004332Transposase, MuDR, plantPFAMPF03108DBD_Tnp_Mutcoord: 26..90
e-value: 4.6E-13
score: 49.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g010190.1Lcy08g010190.1mRNA