Lcy08g009960 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g009960
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionzf-RVT domain-containing protein
LocationChr08: 29136560 .. 29137486 (-)
RNA-Seq ExpressionLcy08g009960
SyntenyLcy08g009960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCGTCTGAATTTATCTCCCCCTCGGGGCAGTGGGATGTTGACAAACTGAGGCAAATACTGTGGGAGCAGGATGTTCAGGAGATTAAGAATATACCTATTAGTAGACACGCCTCTGACCGGTGGGTTTGGCATTATGACAAACACGGTGAATATACTGTCAAGAGCGGGTACAAGCTAGGAATGTTATTGAAACGAGAGGCATCTTCTTCGTGTTCTGATTTGGAGCGAAAGTGGTGGTCCAGAATGTGGAAACTAAATCTTCCGGCCAAGATTAAGCATTTTGTTTGGCGATCGTATCATAATTGCATCCTAGCCGTCATCAATCTTTGGACGCACCATGTTCCGGTCGAAGGAATTTGCTCGTTATGTTCGGAAGTCCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCTAAGGAGGTTTGGACAGGAATGAATATTGGGGTCGATGTTGGATGGAATGTTGAGATGGATATCAAGGATAAATGGTTACAATTTAGCTCTCTTGTGTCTACAGAAGTACTTGAACAGATTTGTGTTACTGCGTGGACTGTTTGGAGTGATCGAAATAAAGTTATGCATAATAAGCCAATTTCTCCTGTAGGAATCAAGTGTGAATGGATCAATGGATACTTGTCCGAGTTCAAAAGTGTGAACCAACGGAAAAGAGGTAAGGAGCAAACTGATCTGGAAGTTCGTCAGATGATTTCTCAGGGACAAAATTTGATTATGCATGTAGATGCAGCATGTGATTTTGAGATTCGTCGGTGTGGAATTGGTATAGTGCTCCGTGATCGGAATGGATGTTTGAAGTATGCGATACATCAAGGCTTGAATACTTTTAAGTTTTCGTTATGTGCTGAGGCGATGGCTGTACTTGAAGGTATAAAGATAGCAATCCAAAATGGGGTTTAG

mRNA sequence

ATGATGGCGTCTGAATTTATCTCCCCCTCGGGGCAGTGGGATGTTGACAAACTGAGGCAAATACTGTGGGAGCAGGATGTTCAGGAGATTAAGAATATACCTATTAGTAGACACGCCTCTGACCGGTGGGTTTGGCATTATGACAAACACGGTGAATATACTGTCAAGAGCGGGTACAAGCTAGGAATGTTATTGAAACGAGAGGCATCTTCTTCGTGTTCTGATTTGGAGCGAAAGTGGTGGTCCAGAATGTGGAAACTAAATCTTCCGGCCAAGATTAAGCATTTTGTTTGGCGATCGTATCATAATTGCATCCTAGCCGTCATCAATCTTTGGACGCACCATGTTCCGGTCGAAGGAATTTGCTCGTTATGTTCGGAAGTCCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCTAAGGAGGTTTGGACAGGAATGAATATTGGGGTCGATGTTGGATGGAATGTTGAGATGGATATCAAGGATAAATGGTTACAATTTAGCTCTCTTGTGTCTACAGAAGTACTTGAACAGATTTGTGTTACTGCGTGGACTGTTTGGAGTGATCGAAATAAAGTTATGCATAATAAGCCAATTTCTCCTGTAGGAATCAAGTGTGAATGGATCAATGGATACTTGTCCGAGTTCAAAAGTGTGAACCAACGGAAAAGAGGTAAGGAGCAAACTGATCTGGAAGTTCGTCAGATGATTTCTCAGGGACAAAATTTGATTATGCATGTAGATGCAGCATGTGATTTTGAGATTCGTCGGTGTGGAATTGGTATAGTGCTCCGTGATCGGAATGGATGTTTGAAGTATGCGATACATCAAGGCTTGAATACTTTTAAGTTTTCGTTATGTGCTGAGGCGATGGCTGTACTTGAAGGTATAAAGATAGCAATCCAAAATGGGGTTTAG

Coding sequence (CDS)

ATGATGGCGTCTGAATTTATCTCCCCCTCGGGGCAGTGGGATGTTGACAAACTGAGGCAAATACTGTGGGAGCAGGATGTTCAGGAGATTAAGAATATACCTATTAGTAGACACGCCTCTGACCGGTGGGTTTGGCATTATGACAAACACGGTGAATATACTGTCAAGAGCGGGTACAAGCTAGGAATGTTATTGAAACGAGAGGCATCTTCTTCGTGTTCTGATTTGGAGCGAAAGTGGTGGTCCAGAATGTGGAAACTAAATCTTCCGGCCAAGATTAAGCATTTTGTTTGGCGATCGTATCATAATTGCATCCTAGCCGTCATCAATCTTTGGACGCACCATGTTCCGGTCGAAGGAATTTGCTCGTTATGTTCGGAAGTCCCAGAAACCACAGATCATGCTCTTTTCCATTGTCATAGAGCTAAGGAGGTTTGGACAGGAATGAATATTGGGGTCGATGTTGGATGGAATGTTGAGATGGATATCAAGGATAAATGGTTACAATTTAGCTCTCTTGTGTCTACAGAAGTACTTGAACAGATTTGTGTTACTGCGTGGACTGTTTGGAGTGATCGAAATAAAGTTATGCATAATAAGCCAATTTCTCCTGTAGGAATCAAGTGTGAATGGATCAATGGATACTTGTCCGAGTTCAAAAGTGTGAACCAACGGAAAAGAGGTAAGGAGCAAACTGATCTGGAAGTTCGTCAGATGATTTCTCAGGGACAAAATTTGATTATGCATGTAGATGCAGCATGTGATTTTGAGATTCGTCGGTGTGGAATTGGTATAGTGCTCCGTGATCGGAATGGATGTTTGAAGTATGCGATACATCAAGGCTTGAATACTTTTAAGTTTTCGTTATGTGCTGAGGCGATGGCTGTACTTGAAGGTATAAAGATAGCAATCCAAAATGGGGTTTAG

Protein sequence

MMASEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRHASDRWVWHYDKHGEYTVKSGYKLGMLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGICSLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLEQICVTAWTVWSDRNKVMHNKPISPVGIKCEWINGYLSEFKSVNQRKRGKEQTDLEVRQMISQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQGLNTFKFSLCAEAMAVLEGIKIAIQNGV
Homology
BLAST of Lcy08g009960 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.7e-41
Identity = 100/307 (32.57%), Postives = 153/307 (49.84%), Query Frame = 0

Query: 4    SEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRH-ASDRWVWHYDKHGEYTVKSGYKLG 63
            + FI+  G WDV  +      +D   I ++PIS +   D W+WHYDK G Y+V+SGYKL 
Sbjct: 1054 ASFITADGNWDVTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLY 1113

Query: 64   MLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGIC 123
            M LK  A+S+ ++     W+ +WKL +P KIK F+WRS H  I    NL    +     C
Sbjct: 1114 MHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPAC 1173

Query: 124  SLCSEVPETTDHALFHCHRAKEVW-TGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLEQ 183
            ++C +  E+  HA FHC RA+++W T       +     +   + W   +  +  + L  
Sbjct: 1174 TICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNL 1233

Query: 184  ICVTAWTVWSDRNKVMHNKPISPVGIKCEWINGYLSEFKSVNQRKRGKEQTDLEVRQMI- 243
              +T W +W+DRN ++H K +SPV  KCEW+  +L +  S  Q      +T    R ++ 
Sbjct: 1234 AAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFL-DSHSQAQMSNYSPRTQSNHRPVVQ 1293

Query: 244  ----SQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQGLNTFKFSLCAEAMAV 303
                S   +L ++ DAAC         G ++RD +  L  A    +      L AE   +
Sbjct: 1294 YWRPSSSVSLKLNTDAAC--RGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCI 1353

BLAST of Lcy08g009960 vs. ExPASy TrEMBL
Match: A0A803PIB6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.1e-40
Identity = 106/311 (34.08%), Postives = 160/311 (51.45%), Query Frame = 0

Query: 2    MASEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRHAS-DRWVWHYDKHGEYTVKSGYK 61
            + +++I+ + +WD++ L       D+  I  IP+S +++ DRW WHYD  G+YTVKSGY 
Sbjct: 1432 LVADYITDTREWDLELLHNDFSPADIDRILTIPLSYNSTRDRWRWHYDSSGDYTVKSGYN 1491

Query: 62   LGMLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEG 121
            L   L+ +  SS S  +  WW   W LNLP+K++ F WR  ++ +    NL+   V    
Sbjct: 1492 LACSLENKDHSSSSTSQEAWWQLFWGLNLPSKVRIFGWRVINSALPVAQNLFHRKVITSA 1551

Query: 122  ICSLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLE 181
             CSLCS   E+  HALF C  AK VW   +  +D      M   D  L  S++++   LE
Sbjct: 1552 TCSLCSRAWESIGHALFSCCHAKSVWQHTSFQLDFTKASFMKDGDYLLFLSTILTKSELE 1611

Query: 182  QICVTAWTVWSDRNKVMHNKPIS-PVGIKCEWINGYLSEFKSVNQRKRGK----EQTDLE 241
            ++  T W +WSDRN  +H K +  P+ I  +    YL+ F SV                 
Sbjct: 1612 KLFCTMWFIWSDRNNYIHCKQLKHPMAISSQ-AEAYLANFHSVKSATAPAVSCVAADART 1671

Query: 242  VRQMISQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQG-LNTFKFSLCAEAM 301
            V+ +     NL M+VDAA D    + GIG+++RD  G +  A+ +  +  FK S   EA 
Sbjct: 1672 VKWVPPTESNLKMNVDAALDSSRNKIGIGVIIRDSTGRVIAAMSKPVVGNFK-SQEMEAK 1731

Query: 302  AVLEGIKIAIQ 306
            A+  G++ A Q
Sbjct: 1732 AMFWGLQWAKQ 1740

BLAST of Lcy08g009960 vs. ExPASy TrEMBL
Match: A0A803NN93 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.9e-40
Identity = 103/310 (33.23%), Postives = 143/310 (46.13%), Query Frame = 0

Query: 2   MASEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRHA-SDRWVWHYDKHGEYTVKSGYK 61
           + +++IS   QWD+DKL       DV+ I  IP+S +A +D WVWHY     YTV SGY 
Sbjct: 646 IVADYISADHQWDIDKLTSDFSALDVENILKIPLSHNAGTDSWVWHYTDAESYTVNSGYH 705

Query: 62  LGMLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEG 121
           L   +  +  SSCS     WW + W LNLP+K+K F WR  HN + +  NL    +    
Sbjct: 706 LACSMASQEDSSCSSASSTWWKQFWNLNLPSKVKIFAWRVMHNALPSASNLHHRRIINSS 765

Query: 122 ICSLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLE 181
            CSLC+   E+  HALF C  AK VW   +   D      M   D  +Q S L +   LE
Sbjct: 766 TCSLCTNAWESIGHALFSCKHAKAVWRCSDFSFDFTAASRMFEGDFLIQLSQLHTKSDLE 825

Query: 182 QICVTAWTVWSDRNKVMHNKPISPVGIKCEWINGYLSEFKSVNQRKRGKEQTDLEVRQMI 241
            I  T W +WSDRN ++H K              Y   F   +      +Q D  V    
Sbjct: 826 MIICTMWFIWSDRNNIIHQKQHKKPADLLASSKAYYCNFLQQSAITASLKQVDPAVAAHC 885

Query: 242 -----SQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQGLNTFKFSLCAEAMA 301
                ++G+ + ++VDAA      + G G ++RD  G +  A     N    S   EA A
Sbjct: 886 PWTPPTEGK-IKLNVDAAVLSSQNKLGYGALIRDSTGTVLAACSSPANGNFKSKHMEAKA 945

Query: 302 VLEGIKIAIQ 306
           +   ++ A Q
Sbjct: 946 LFHALRWANQ 954

BLAST of Lcy08g009960 vs. ExPASy TrEMBL
Match: A0A803PKJ2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.6e-39
Identity = 103/307 (33.55%), Postives = 161/307 (52.44%), Query Frame = 0

Query: 4   SEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRHA-SDRWVWHYDKHGEYTVKSGYKLG 63
           +++I+ + +W+ + L +     DV++I  IP+S  + +D W+WHYD  GEYTVKSGY L 
Sbjct: 471 AQYITDAREWNWELLHRDFSPVDVEKILTIPLSYSSMTDCWIWHYDCSGEYTVKSGYTLA 530

Query: 64  MLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGIC 123
             L+    +S S  +  WW R W L LP+K++ F W+  ++ +    NL+   V     C
Sbjct: 531 CSLENRDQTSSSGSQETWWKRFWGLTLPSKVRIFGWKVINSALPVATNLFHQKVITSATC 590

Query: 124 SLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLEQI 183
           SLCS   E+  HALF C  AK VW   +  +D      M   D  +  S++++   LE++
Sbjct: 591 SLCSRAWESIGHALFSCCHAKAVWQNTSFHLDFQKASYMKDGDYLMFLSTILTKSELERL 650

Query: 184 CVTAWTVWSDRNKVMHNKPI-SPVGIKCEWINGYLSEFKSVNQRKRGKE---QTDLEVRQ 243
             T W +WSDRN  +H K +  P+ I  +    YL+ FKSV             D+   +
Sbjct: 651 FCTMWFIWSDRNNFIHGKQLKQPMAISSQ-AEVYLANFKSVQLHTTPVAFCVAADVNQMK 710

Query: 244 MISQGQ-NLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQ-GLNTFKFSLCAEAMAV 303
            I   +  L M+VDAA D    + GIG+++RD +G +  A+ +  +  FK S   EA A+
Sbjct: 711 WIPPPETKLKMNVDAAIDSSRSKIGIGVIIRDSSGSVVVAMSKPTVGNFK-SQEMEAKAM 770

BLAST of Lcy08g009960 vs. ExPASy TrEMBL
Match: A0A803NM27 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 100/282 (35.46%), Postives = 138/282 (48.94%), Query Frame = 0

Query: 4    SEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRHA-SDRWVWHYDKHGEYTVKSGYKLG 63
            +++I+P  +W+V KL       DV+ I ++P+S HA SD WVWH    G+Y VKSGY + 
Sbjct: 1382 ADYITPEKEWNVSKLNADFSSADVERILSLPLSHHAHSDYWVWH-ATGGQYEVKSGYHVA 1441

Query: 64   MLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGIC 123
             LL  E   S S     WW   W+L LP K+K F W++ HN +     L+         C
Sbjct: 1442 CLLADENPVSVSSPNVSWWKSFWQLKLPPKVKLFAWKAIHNALPVASELYKRKSLTSASC 1501

Query: 124  SLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLEQI 183
            SLC    E+  HA+F C  A+ VW       +    V M I+D   Q S   +   LE I
Sbjct: 1502 SLCLNAWESVGHAMFACKHARHVWKIAGFSFNNKAAVSMKIEDFLFQISECYTKSELEMI 1561

Query: 184  CVTAWTVWSDRNKVMHNK-PISPVGIKCEWINGYLSEFKSVNQRK----RGKEQTDLEVR 243
              T W++WSDRN V+H K P  P  I  +    +LS F+S  Q           T    R
Sbjct: 1562 FCTMWSIWSDRNNVLHGKIPQQPSVISAK-AASFLSSFQSAQQLSLHAGLAPADTPTAHR 1621

Query: 244  QMISQGQNLI-MHVDAACDFEIRRCGIGIVLRDRNGCLKYAI 279
                   NL+ ++VDAA D   +R G G ++RD  G +K A+
Sbjct: 1622 AWTPPPPNLLKLNVDAAFDDTRKRIGFGAIIRDSTGNVKAAM 1661

BLAST of Lcy08g009960 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 7.6e-41
Identity = 100/307 (32.57%), Postives = 153/307 (49.84%), Query Frame = 0

Query: 4    SEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRH-ASDRWVWHYDKHGEYTVKSGYKLG 63
            + FI+  G WDV  +      +D   I ++PIS +   D W+WHYDK G Y+V+SGYKL 
Sbjct: 1054 ASFITADGNWDVTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLY 1113

Query: 64   MLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGIC 123
            M LK  A+S+ ++     W+ +WKL +P KIK F+WRS H  I    NL    +     C
Sbjct: 1114 MHLKCNATSASTNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPAC 1173

Query: 124  SLCSEVPETTDHALFHCHRAKEVW-TGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLEQ 183
            ++C +  E+  HA FHC RA+++W T       +     +   + W   +  +  + L  
Sbjct: 1174 TICGDRRESIIHAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNL 1233

Query: 184  ICVTAWTVWSDRNKVMHNKPISPVGIKCEWINGYLSEFKSVNQRKRGKEQTDLEVRQMI- 243
              +T W +W+DRN ++H K +SPV  KCEW+  +L +  S  Q      +T    R ++ 
Sbjct: 1234 AAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFL-DSHSQAQMSNYSPRTQSNHRPVVQ 1293

Query: 244  ----SQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQGLNTFKFSLCAEAMAV 303
                S   +L ++ DAAC         G ++RD +  L  A    +      L AE   +
Sbjct: 1294 YWRPSSSVSLKLNTDAAC--RGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCI 1353

BLAST of Lcy08g009960 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])

HSP 1 Score: 177.2 bits (448), Expect = 2.2e-40
Identity = 106/311 (34.08%), Postives = 160/311 (51.45%), Query Frame = 0

Query: 2    MASEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRHAS-DRWVWHYDKHGEYTVKSGYK 61
            + +++I+ + +WD++ L       D+  I  IP+S +++ DRW WHYD  G+YTVKSGY 
Sbjct: 972  LVADYITDTREWDLELLHNDFSPADIDRILTIPLSYNSTRDRWRWHYDSSGDYTVKSGYN 1031

Query: 62   LGMLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEG 121
            L   L+ +  SS S  +  WW   W LNLP+K++ F WR  ++ +    NL+   V    
Sbjct: 1032 LACSLENKDHSSSSTSQEAWWQLFWGLNLPSKVRIFGWRVINSALPVAQNLFHRKVITSA 1091

Query: 122  ICSLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLE 181
             CSLCS   E+  HALF C  AK VW   +  +D      M   D  L  S++++   LE
Sbjct: 1092 TCSLCSRAWESIGHALFSCCHAKSVWQHTSFQLDFTKASFMKDGDYLLFLSTILTKSELE 1151

Query: 182  QICVTAWTVWSDRNKVMHNKPIS-PVGIKCEWINGYLSEFKSVNQRKRGK----EQTDLE 241
            ++  T W +WSDRN  +H K +  P+ I  +    YL+ F SV                 
Sbjct: 1152 KLFCTMWFIWSDRNNYIHCKQLKHPMAISSQ-AEAYLANFHSVKSATAPAVSCVAADART 1211

Query: 242  VRQMISQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQG-LNTFKFSLCAEAM 301
            V+ +     NL M+VDAA D    + GIG+++RD  G +  A+ +  +  FK S   EA 
Sbjct: 1212 VKWVPPTESNLKMNVDAALDSSRNKIGIGVIIRDSTGRVIAAMSKPVVGNFK-SQEMEAK 1271

Query: 302  AVLEGIKIAIQ 306
            A+  G++ A Q
Sbjct: 1272 AMFWGLQWAKQ 1280

BLAST of Lcy08g009960 vs. NCBI nr
Match: XP_017250619.1 (PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus])

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-39
Identity = 100/308 (32.47%), Postives = 152/308 (49.35%), Query Frame = 0

Query: 5    EFISPSGQWDVDKLRQILWEQDVQEIKNIPISR--HASDRWVWHYDKHGEYTVKSGYKLG 64
            E+I+  G W+ + +RQ     D+Q I  IP+SR  HA D W WHY+  G YTVKSGYKL 
Sbjct: 1176 EYIT-GGTWNRELIRQTFLSPDIQLILEIPLSRFDHA-DSWFWHYNSQGNYTVKSGYKLV 1235

Query: 65   MLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGIC 124
              L ++ SSS   +  KWW   W   +P KI  F WR YH  +     L    + +   C
Sbjct: 1236 TNLNKDVSSSSEQVMGKWWKYFWANKIPRKILIFAWRGYHEILPTTKGLHIRKISLHSNC 1295

Query: 125  SLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLEQI 184
             LC    ++  HA+F C  A+EVW  M     VG   E+  KD  L  + L+  + ++ +
Sbjct: 1296 PLCGYADDSNAHAVFWCPFAQEVWELMTYPFLVGRKEEISFKDVLLYITELLEKDDVDMM 1355

Query: 185  CVTAWTVWSDRNKVMH-NKPISPVGIKCEWINGYLSEFKS--VNQRKRGKEQTDLEVRQM 244
             +T W +W++RNK++H  K  +P  IK  W++ Y  E K+  V++ +       +   Q+
Sbjct: 1356 LLTTWGIWTERNKLIHQQKRRTPSQIKV-WLSAYYEEIKNAYVSENRAISRGDPINAHQV 1415

Query: 245  ISQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQGLNTFKFSLCAEAMAVLEG 304
                    + VDAA      R G+G  +   N   +  + + L      L AEA+A++ G
Sbjct: 1416 EEVSFGSTLFVDAALSKNTERIGLGAAIIASNNKTQATLSKPLEGILSVLHAEALALVVG 1475

Query: 305  IKIAIQNG 308
            ++ A   G
Sbjct: 1476 LQWAQTTG 1480

BLAST of Lcy08g009960 vs. NCBI nr
Match: XP_030502555.1 (uncharacterized protein LOC115717715 [Cannabis sativa])

HSP 1 Score: 172.9 bits (437), Expect = 4.2e-39
Identity = 102/311 (32.80%), Postives = 163/311 (52.41%), Query Frame = 0

Query: 2    MASEFISPSGQWDVDKLRQILWEQDVQEIKNIPISRHA-SDRWVWHYDKHGEYTVKSGYK 61
            + + +I+ + +W+ + L +     DV++I  IP+S ++ SD W+WHY+  GEYTVKS Y 
Sbjct: 972  LVAHYITDAREWNWELLHRDFSPADVEKILTIPLSYNSMSDCWIWHYECSGEYTVKSRYT 1031

Query: 62   LGMLLKREASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEG 121
            L   L+    +S S  +  WW R W L LP+K++ F W+  ++ +    NL+   V    
Sbjct: 1032 LACSLENRDQTSSSGSQETWWKRFWGLTLPSKVRIFGWKVINSALPVATNLFHRKVITSA 1091

Query: 122  ICSLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLE 181
             CSLCS V E+  HALF C  AK VW      +D      M   D  +  S++++   LE
Sbjct: 1092 TCSLCSRVWESIGHALFSCCHAKAVWQNTGFQLDFQKASYMKDGDYLMFLSTILTNSELE 1151

Query: 182  QICVTAWTVWSDRNKVMHNKPI-SPVGIKCEWINGYLSEFKSVNQRKRG---KEQTDL-E 241
            ++  T W +WSDRN  +H K +  P+ I  +    YL+ F SV  +      +   D+  
Sbjct: 1152 RLFCTMWFIWSDRNNFIHGKQLKQPMAISSQ-AEAYLANFNSVQLQATPATFRVAADVNR 1211

Query: 242  VRQMISQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQ-GLNTFKFSLCAEAM 301
            V+        L M+VDAA D    + G+G+++RD +G +  A+ +  +  FK S   EA 
Sbjct: 1212 VKWTPPPETKLKMNVDAAIDSSRSKIGMGVIIRDSSGSVVAAMSKPAVGNFK-SQEMEAK 1271

Query: 302  AVLEGIKIAIQ 306
            A+  G+++A Q
Sbjct: 1272 AMFWGLQLAEQ 1280

BLAST of Lcy08g009960 vs. NCBI nr
Match: XP_030964645.1 (uncharacterized protein LOC115985893 [Quercus lobata])

HSP 1 Score: 170.2 bits (430), Expect = 2.7e-38
Identity = 97/312 (31.09%), Postives = 156/312 (50.00%), Query Frame = 0

Query: 11   GQWDVDKLRQILWEQDVQEIKNIPIS-RHASDRWVWHYDKHGEYTVKSGYKLGMLLKRE- 70
            G+WDVD L+  L  +DV+ +  I +S     D  +W     G++TVKS Y+L +  + + 
Sbjct: 726  GEWDVDALQSTLMPKDVESVLTIALSPTLPEDCLIWALTSSGKFTVKSAYRLALEERTDH 785

Query: 71   --ASSSCSDLERKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGICSLCS 130
                SS +   +K+WS +W+L +P KI+ F WR+  N +    NL+   +  + IC +C 
Sbjct: 786  GVQESSNATCMKKFWSFIWRLRVPNKIRSFTWRACRNILPTKANLFRRKITPDSICEVCG 845

Query: 131  EVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLV---------STE 190
               ETT H L+HCHRAKEVW  + +  D        + DK  +F  LV         + E
Sbjct: 846  NFEETTSHVLWHCHRAKEVWKEVGLDTD-------KVMDKCPEFIDLVWYARNVKQWTEE 905

Query: 191  VLEQICVTAWTVWSDRNKVMHNKPISPVGIKCEWINGYLSEFKSVNQRKRG-KEQTDLEV 250
             +  + +TAW +W++RN+V H K   P  +  +W   YL ++   N   R  KE T  EV
Sbjct: 906  DIGLMVMTAWGIWTNRNEVRHGKNRKPAAVLAKWTKSYLEDYLMANHSTRPYKEST--EV 965

Query: 251  RQMISQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQGLNTFKFSLCAEAMAV 309
               + +      ++D A   + +  G+G+V+RD  G +  A+ + L     +L  EA A+
Sbjct: 966  TWQLPKPPWFKANMDGAVFSQQKEAGVGVVIRDHFGAVVAAVSRKLKAPLGALEVEAKAM 1025

BLAST of Lcy08g009960 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 5.6e-18
Identity = 78/310 (25.16%), Postives = 131/310 (42.26%), Query Frame = 0

Query: 1   MMASEFISPSG-QWDVDKLRQILWEQDVQEIKNI-PISRHASDRWVWHYDKHGEYTVKSG 60
           +  S+ I  SG +W  D +  +  E + + I  + P  R   D + W Y   G+YTVKSG
Sbjct: 169 LKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSG 228

Query: 61  YKL--GMLLKREASSSCSDLE-RKWWSRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHH 120
           Y +   ++ KR +    S+      + ++WK     KI+HF+W+   N +     L   H
Sbjct: 229 YWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRH 288

Query: 121 VPVEGICSLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVG--WNVEMDIKDKW---LQF 180
           +  E  C  C    ET +H LF C  A+  W   +I + +G  W   + +   W   L  
Sbjct: 289 LSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGN 348

Query: 181 SSLVSTEVLEQICVTAWTVWSDRNKVMHNKPISPVGIKCEWINGYLSEFKSVNQRKR--G 240
            +    +  + +    W +W +RN+++                  L E++   + +    
Sbjct: 349 GNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGT 408

Query: 241 KEQTDLEV--RQMISQGQNLIMHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQGLNTFK 297
           K Q +     R      Q +  + DA  + +  RCGIG VLR+  G +K+   + L   K
Sbjct: 409 KPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLK 468

BLAST of Lcy08g009960 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-16
Identity = 52/199 (26.13%), Postives = 87/199 (43.72%), Query Frame = 0

Query: 13  WDVDKLRQILWEQDVQEIKNIPISRHAS-DRWVWHYDKHGEYTVKSGYKLGMLLKREASS 72
           WD  K+ Q + + D   I  I +++    D+ +W+Y+  GEYTV+SGY    LL  + S+
Sbjct: 88  WDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGY---WLLTHDPST 147

Query: 73  SCSDLERKWWS-----RMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGICSLCS 132
           +   +     S     R+W L +  K+KHF+WR+    +     L T  + ++  C  C 
Sbjct: 148 NIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCH 207

Query: 133 EVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKDKWLQFSSLVSTEVLEQI---- 192
              E+ +HALF C  A   W   +  +     +  D ++      + V    +       
Sbjct: 208 RENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILNFVQDTTMSDFHKLL 267

Query: 193 -CVTAWTVWSDRNKVMHNK 201
                W +W  RN V+ NK
Sbjct: 268 PVWLIWRIWKARNNVVFNK 283

BLAST of Lcy08g009960 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-11
Identity = 33/116 (28.45%), Postives = 53/116 (45.69%), Query Frame = 0

Query: 84  MWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGICSLCSEVPETTDHALFHCHRAK 143
           +WKL++  KIKHF+WR     +     L + ++  + IC  C    ET  H +F+C   +
Sbjct: 37  IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96

Query: 144 EVWTGMNIGVDVGWNVEMDIKD---KWLQFSSLVSTEVLEQICV--TAWTVWSDRN 195
            VW   NI +   W      +D   + +Q S   +T  L++       W +W  RN
Sbjct: 97  SVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRFLPFWIMWRLWKSRN 152

BLAST of Lcy08g009960 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 3.0e-11
Identity = 56/240 (23.33%), Postives = 93/240 (38.75%), Query Frame = 0

Query: 82  SRMWKLNLPAKIKHFVWRSYHNCILAVINLWTHHVPVEGICSLCSEVPETTDHALFHCHR 141
           +++WKL    KIKHF+W+     +    NL   H+     C  C +  ET+ H  F C  
Sbjct: 16  AKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFY 75

Query: 142 AKEVWTGMNIGVDV--GWNVEMDIKDKWLQFSSLVS--TEVLEQICVTAWTVWSDRNK-V 201
           A++VW    I         + M+ K + L  S L +   ++        W +W  RN+ V
Sbjct: 76  AQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLV 135

Query: 202 MHNKPISPVGI---------KCEWINGYLSEFKSVNQRKRGKEQTDLEVRQMISQGQNLI 261
              K IS             + E  N Y+          R ++ T    +        + 
Sbjct: 136 FQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPSTWIK 195

Query: 262 MHVDAACDFEIRRCGIGIVLRDRNGCLKYAIHQGLNTFKFSLCAEAMAVLEGIKIAIQNG 308
            + D A + + R    G ++RD NG    +     +T   SL +E  A++  ++ A   G
Sbjct: 196 YNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALIIAMQHAWSQG 255

BLAST of Lcy08g009960 vs. TAIR 10
Match: AT3G25720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.2e-06
Identity = 24/88 (27.27%), Postives = 44/88 (50.00%), Query Frame = 0

Query: 116 VPVEGICSLCSEVPETTDHALFHCHRAKEVWTGMNIGVDVGWNVEMDIKD--KWLQFSSL 175
           +PV  +C LCS  PET DH L  C  +K +W+ +   + +   + ++  +   W++ SS 
Sbjct: 156 LPVSPLCCLCSCAPETRDHLLLGCSFSKALWSSVQSRLRLHSLIFLNWAELLLWIRRSST 215

Query: 176 VSTEVLEQICV--TAWTVWSDRNKVMHN 200
            +   L ++      +  W  RN ++HN
Sbjct: 216 SAPSTLRKLVAHSVVYATWKQRNNMLHN 243

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX303.7e-4132.57uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803PIB61.1e-4034.08Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NN936.9e-4033.23Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PKJ22.6e-3933.55Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NM275.9e-3935.46Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022158377.17.6e-4132.57uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030497600.12.2e-4034.08uncharacterized protein LOC115713257 [Cannabis sativa][more]
XP_017250619.12.4e-3932.47PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus][more]
XP_030502555.14.2e-3932.80uncharacterized protein LOC115717715 [Cannabis sativa][more]
XP_030964645.12.7e-3831.09uncharacterized protein LOC115985893 [Quercus lobata][more]
Match NameE-valueIdentityDescription
AT4G29090.15.6e-1825.16Ribonuclease H-like superfamily protein [more]
AT3G09510.16.9e-1626.13Ribonuclease H-like superfamily protein [more]
AT2G02650.13.0e-1128.45Ribonuclease H-like superfamily protein [more]
AT3G25270.13.0e-1123.33Ribonuclease H-like superfamily protein [more]
AT3G25720.12.2e-0627.27RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 250..308
e-value: 1.8E-6
score: 27.8
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 53..146
e-value: 2.8E-16
score: 60.0
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 19..278
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 19..278

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g009960.1Lcy08g009960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity