Lcy08g009850 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g009850
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	photosynthetic NDH subunit of lumenal location 2, chloroplastic
Location	Chr08: 28567425 .. 28568732 (-)
RNA-Seq Expression	Lcy08g009850
Synteny	Lcy08g009850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAAGTCTGTGTGTTTCCCTTACGGAAATTAAAGGCGAGAAGCCAAAAGTTTATCCAAAGCCATGCCTCCCTTTGCCAACGCCAACGCCAACACTTTCTTCTCCACTCGCATTTCCACTCCACACAAATGCCACCGCCACCCCTTCCCCATCATCACCGCCTCCCTTTCGGTCCACCGCCGCCATATCGCGACGGCACTCGCGGCGGCGGTTGGGCTGCAGGCCGCGGCGCCGCTCGCTCTTGCCCAGAGCTGGGGCACCCACTCGTTCATTAAAGAGCGGTACTTCGAGCCAGGGCTGTCGGCGGAGGATGCGGTGGCGCGGATAAGACAGACGGCGGAGGGACTTCACAGCATCCGGGACATGCTTGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTGAAGTCAGCCTATCTCTCTCAAGACTTGAAAACTGCCATGGCCGTTCTGCCCCAAACTCGCCAAGCTGACTTCGTTAAGATTGCTAATGAGTTGGTCGATAACATGGCCGAGGTATCCACTTTTTCTGCCATTAGATTGAATTTCTGTTTGGATCAATTGGTTATAGGAATTTCTTGAATCCCATCTCAAAGTTTGAATTTTTGGAGAGATTATATGCTTTAAACAAAGGTAATTTAACACAATGACTATGAGTGACATTGAAAACTGCGTACGCTGCCCCTTTCCTAAAACTGAATATGTAAGTAAAGATATGGATTTTAGAAATTGGACTTATATGTAGCTGATGAAATTAGCAAATTAATTAAGATACAATAATCTACTTATCCATTCAAGAATCGTACTAGTCTACACGGTGATAACTTGGTTTGGACCTTTGTACTAATTTGATTTGTGTTTGTTCATTGGACATTGGCTTGGTATTTCTTCAGTTGGATTACTACGTTCGCACACCGAAGGTGTACGAGTCATATTTGTATTACGAAAAGACACTGAAATCCATCGATGATTTGGTGGCTTTATTGGCTTAGCTGCAAATAATAACTCACCAAGCTAAGTATCATCACGGATTGAATGCGTCGAAAGGGAACGCCTCTCACATGCATAGAAAGTTTCTGCACATTTGGATATGTCATGTTTTAAGAATTATTGGCCTTTTATTACAACTCCATATGTAAAAATTGTTTATTCGACAATAGTAATAATGTAGAAATCATTTCTTTCTTTTAAAAAATTTAACATTTTTGAGGTACAATTCCGACTCTTGTTCTACTTATATTTTTAATTTGTAATTACATTATTTGTGAATGAATAATGCATGATGTTTATACCAAAATTTG

mRNA sequence

AAGGAAGTCTGTGTGTTTCCCTTACGGAAATTAAAGGCGAGAAGCCAAAAGTTTATCCAAAGCCATGCCTCCCTTTGCCAACGCCAACGCCAACACTTTCTTCTCCACTCGCATTTCCACTCCACACAAATGCCACCGCCACCCCTTCCCCATCATCACCGCCTCCCTTTCGGTCCACCGCCGCCATATCGCGACGGCACTCGCGGCGGCGGTTGGGCTGCAGGCCGCGGCGCCGCTCGCTCTTGCCCAGAGCTGGGGCACCCACTCGTTCATTAAAGAGCGGTACTTCGAGCCAGGGCTGTCGGCGGAGGATGCGGTGGCGCGGATAAGACAGACGGCGGAGGGACTTCACAGCATCCGGGACATGCTTGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTGAAGTCAGCCTATCTCTCTCAAGACTTGAAAACTGCCATGGCCGTTCTGCCCCAAACTCGCCAAGCTGACTTCGTTAAGATTGCTAATGAGTTGGTCGATAACATGGCCGAGTTGGATTACTACGTTCGCACACCGAAGGTGTACGAGTCATATTTGTATTACGAAAAGACACTGAAATCCATCGATGATTTGGTGGCTTTATTGGCTTAGCTGCAAATAATAACTCACCAAGCTAAGTATCATCACGGATTGAATGCGTCGAAAGGGAACGCCTCTCACATGCATAGAAAGTTTCTGCACATTTGGATATGTCATGTTTTAAGAATTATTGGCCTTTTATTACAACTCCATATGTAAAAATTGTTTATTCGACAATAGTAATAATGTAGAAATCATTTCTTTCTTTTAAAAAATTTAACATTTTTGAGGTACAATTCCGACTCTTGTTCTACTTATATTTTTAATTTGTAATTACATTATTTGTGAATGAATAATGCATGATGTTTATACCAAAATTTG

Coding sequence (CDS)

ATGCCTCCCTTTGCCAACGCCAACGCCAACACTTTCTTCTCCACTCGCATTTCCACTCCACACAAATGCCACCGCCACCCCTTCCCCATCATCACCGCCTCCCTTTCGGTCCACCGCCGCCATATCGCGACGGCACTCGCGGCGGCGGTTGGGCTGCAGGCCGCGGCGCCGCTCGCTCTTGCCCAGAGCTGGGGCACCCACTCGTTCATTAAAGAGCGGTACTTCGAGCCAGGGCTGTCGGCGGAGGATGCGGTGGCGCGGATAAGACAGACGGCGGAGGGACTTCACAGCATCCGGGACATGCTTGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTGAAGTCAGCCTATCTCTCTCAAGACTTGAAAACTGCCATGGCCGTTCTGCCCCAAACTCGCCAAGCTGACTTCGTTAAGATTGCTAATGAGTTGGTCGATAACATGGCCGAGTTGGATTACTACGTTCGCACACCGAAGGTGTACGAGTCATATTTGTATTACGAAAAGACACTGAAATCCATCGATGATTTGGTGGCTTTATTGGCTTAG

Protein sequence

MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLALAQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA

Homology

[Close]

BLAST of Lcy08g009850 vs. ExPASy Swiss-Prot
Match: Q9XI73 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-48
Identity = 100/148 (67.57%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 39  RRHIATALAAAVGLQAAAPLALAQ-SWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHS 98
           RR   T+L     +  A   ALAQ  WGT SFIKE+YF PGLS EDA ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 99  IRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYY 158
           +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM +LP++R+ D+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 159 VRTPKVYESYLYYEKTLKSIDDLVALLA 186
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of Lcy08g009850 vs. ExPASy Swiss-Prot
Match: Q41806 (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 31/115 (26.96%), Postives = 67/115 (58.26%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +KER++   L   +AVAR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           A  P+  +    ++  +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of Lcy08g009850 vs. ExPASy Swiss-Prot
Match: Q41048 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +KER++   L   +A AR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           A  P+  +    ++  +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of Lcy08g009850 vs. ExPASy Swiss-Prot
Match: Q9XFT3 (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08
Identity = 28/115 (24.35%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +K+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           +  P+  +     +  +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Lcy08g009850 vs. ExPASy Swiss-Prot
Match: P83646 (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 39/156 (25.00%), Postives = 75/156 (48.08%), Query Frame = 0


Query: 45  ALAAAVGLQAAAPLALA----------------QSWGTHSFIKERYFEPGLSAEDAVARI 104
           ALA A   +AA P+ L                 Q+  T   ++ER++   L   +A AR 
Sbjct: 61  ALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPLRERFYLQPLPPAEAAARA 120

Query: 105 RQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELV 164
           +++A+ + +++ ++E   W +V   +RL+++YL  DLKT +   P+  +     +  +L 
Sbjct: 121 KESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLF 180

Query: 165 DNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
             +  LD+  +     E+  YY  T  ++ D++A L
Sbjct: 181 ATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216

[Close]

BLAST of Lcy08g009850 vs. ExPASy TrEMBL
Match: A0A6J1G2K7 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111450221 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.0e-83
Identity = 161/185 (87.03%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+HRRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ ++VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Lcy08g009850 vs. ExPASy TrEMBL
Match: A0A6J1I9U1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471370 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.6e-82
Identity = 159/185 (85.95%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+ RRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYF+PGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ D+VK ANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Lcy08g009850 vs. ExPASy TrEMBL
Match: A0A0A0L3W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.0e-79
Identity = 160/187 (85.56%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKC-HRHPFPIITASLSVHRRHIATALAAAVGLQAAAPL- 60
           MP  ANAN NT FS+RISTPHK  HR  FP+ITASL +HRRHIAT LA  VGLQAA PL 
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKS 120
           ALAQSWGTHSFIKERYFEPGLSAE+AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180
           AYLSQDLKTAM  LPQ R+ DFVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVALLA 186
           DLVALLA
Sbjct: 181 DLVALLA 187

[Close]

BLAST of Lcy08g009850 vs. ExPASy TrEMBL
Match: A0A5D3DC39 (Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G001130 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.3e-77
Identity = 156/182 (85.71%), Postives = 164/182 (90.11%), Query Frame = 0


Query: 5   ANANANTFFSTRISTPHK-CHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLALAQS 64
           ANAN +T FS+ ISTPHK  HR  FPIITASL +HRRHIAT LA  +GLQAA PLALAQS
Sbjct: 6   ANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQS 65

Query: 65  WGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQ 124
           WGTHSFIKERYFEPGLSA++AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQ
Sbjct: 66  WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQ 125

Query: 125 DLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 184
           DLKTAM  LPQ RQ DFVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL
Sbjct: 126 DLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 185

Query: 185 LA 186
           LA
Sbjct: 186 LA 186

[Close]

BLAST of Lcy08g009850 vs. ExPASy TrEMBL
Match: A0A1S3AVQ2 (photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483197 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.3e-77
Identity = 156/182 (85.71%), Postives = 164/182 (90.11%), Query Frame = 0


Query: 5   ANANANTFFSTRISTPHK-CHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLALAQS 64
           ANAN +T FS+ ISTPHK  HR  FPIITASL +HRRHIAT LA  +GLQAA PLALAQS
Sbjct: 6   ANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQS 65

Query: 65  WGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQ 124
           WGTHSFIKERYFEPGLSA++AVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQ
Sbjct: 66  WGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQ 125

Query: 125 DLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 184
           DLKTAM  LPQ RQ DFVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL
Sbjct: 126 DLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 185

Query: 185 LA 186
           LA
Sbjct: 186 LA 186

[Close]

BLAST of Lcy08g009850 vs. NCBI nr
Match: XP_022946003.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 6.3e-83
Identity = 161/185 (87.03%), Postives = 172/185 (92.97%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+HRRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIHRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ ++VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Lcy08g009850 vs. NCBI nr
Match: XP_038880767.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 316.2 bits (809), Expect = 1.8e-82
Identity = 163/182 (89.56%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 7   ANANTFFSTRISTPHKC---HRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLALAQS 66
           ANANT F +RISTPHKC    RH FPIITASLS+HRRHIATALAA +GLQA APLALAQS
Sbjct: 5   ANANTLFISRISTPHKCSHRRRHHFPIITASLSIHRRHIATALAAVIGLQATAPLALAQS 64

Query: 67  WGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQ 126
           WGTHSFIKERYFEPGLSAE+AVARI+QTAEGLHSIR+MLETMSWRYVIFYIRLKSAYLSQ
Sbjct: 65  WGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQ 124

Query: 127 DLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 186
           DLKTAM+VLPQ RQ DFVK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL
Sbjct: 125 DLKTAMSVLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVAL 184

[Close]

BLAST of Lcy08g009850 vs. NCBI nr
Match: XP_022972860.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 5.3e-82
Identity = 159/185 (85.95%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+ RRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYF+PGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFQPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ D+VK ANELVDNMAELDYY+RTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNDYVKTANELVDNMAELDYYIRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Lcy08g009850 vs. NCBI nr
Match: KAG6598987.1 (Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011082.1 Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.3 bits (804), Expect = 7.0e-82
Identity = 160/185 (86.49%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+ RRHIATALA  VGLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSISRRHIATALALVVGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ ++VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Lcy08g009850 vs. NCBI nr
Match: XP_023545788.1 (photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.2 bits (801), Expect = 1.6e-81
Identity = 159/185 (85.95%), Postives = 170/185 (91.89%), Query Frame = 0


Query: 1   MPPFANANANTFFSTRISTPHKCHRHPFPIITASLSVHRRHIATALAAAVGLQAAAPLAL 60
           MP F  ANA T FS+RI TPH+CHRHPFPII+ASLS+ RRHIATALA   GLQAAAP AL
Sbjct: 1   MPAF--ANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPAL 60

Query: 61  AQSWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120
           AQ+WGTHSFIKERYFEPGLS E+AVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY
Sbjct: 61  AQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAY 120

Query: 121 LSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 180
           LSQDLKTAM+VLPQ RQ ++VK ANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDL
Sbjct: 121 LSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDL 180

Query: 181 VALLA 186
           VA+LA
Sbjct: 181 VAILA 183

[Close]

BLAST of Lcy08g009850 vs. TAIR 10
Match: AT1G14150.1 (PsbQ-like 2 )

HSP 1 Score: 193.7 bits (491), Expect = 1.3e-49
Identity = 100/148 (67.57%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 39  RRHIATALAAAVGLQAAAPLALAQ-SWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHS 98
           RR   T+L     +  A   ALAQ  WGT SFIKE+YF PGLS EDA ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 99  IRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAELDYY 158
           +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM +LP++R+ D+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 159 VRTPKVYESYLYYEKTLKSIDDLVALLA 186
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of Lcy08g009850 vs. TAIR 10
Match: AT1G14150.2 (PsbQ-like 2 )

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-33
Identity = 73/117 (62.39%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 39  RRHIATALAAAVGLQAAAPLALAQ-SWGTHSFIKERYFEPGLSAEDAVARIRQTAEGLHS 98
           RR   T+L     +  A   ALAQ  WGT SFIKE+YF PGLS EDA ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 99  IRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMAVLPQTRQADFVKIANELVDNMAEL 155
           +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM +LP++R+ D+V+ ANELV+NM+E+
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSEV 159

[Close]

BLAST of Lcy08g009850 vs. TAIR 10
Match: AT4G21280.1 (photosystem II subunit QA )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 28/115 (24.35%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +K+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 108 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 167

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           +  P+  +     +  +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 168 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 222

[Close]

BLAST of Lcy08g009850 vs. TAIR 10
Match: AT4G21280.2 (photosystem II subunit QA )

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-09
Identity = 28/115 (24.35%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 70  IKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 129
           +K+R++   L   +A AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 130 AVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185
           +  P+  +     +  +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Lcy08g009850 vs. TAIR 10
Match: AT3G01440.1 (PsbQ-like 1 )

HSP 1 Score: 51.2 bits (121), Expect = 1.0e-06
Identity = 29/121 (23.97%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 65  GTHSFIKERYFEPGLSAEDAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124
           GT +FIK+  +   +  +  + R+++ A  L ++ D++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 125 LKTAMAVLPQTRQADFVKIANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
               ++      +     +AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 185 A 186
           A
Sbjct: 220 A 220

The following BLAST results are available for this feature:

BLAST of Lcy08g009850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI73	1.8e-48	67.57	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
Q41806	1.6e-09	26.96	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays OX=4577 GN=PSBQ2...	[more]
Q41048	4.8e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays OX=4577 GN=PSBQ1...	[more]
Q9XFT3	1.8e-08	24.35	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
P83646	1.3e-06	25.00	Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica ...	[more]

BLAST of Lcy08g009850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2K7	3.0e-83	87.03	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita mos...	[more]
A0A6J1I9U1	2.6e-82	85.95	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucurbita max...	[more]
A0A0A0L3W3	2.0e-79	85.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119660 PE=3 SV=1	[more]
A0A5D3DC39	3.3e-77	85.71	Photosynthetic NDH subunit of lumenal location 2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3AVQ2	3.3e-77	85.71	photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Cucumis melo ...	[more]

BLAST of Lcy08g009850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946003.1	6.3e-83	87.03	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita mosch...	[more]
XP_038880767.1	1.8e-82	89.56	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Benincasa hispi...	[more]
XP_022972860.1	5.3e-82	85.95	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita maxim...	[more]
KAG6598987.1	7.0e-82	86.49	Photosynthetic NDH subunit of lumenal location 2, chloroplastic, partial [Cucurb...	[more]
XP_023545788.1	1.6e-81	85.95	photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucurbita pepo ...	[more]

BLAST of Lcy08g009850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14150.1	1.3e-49	67.57	PsbQ-like 2	[more]
AT1G14150.2	1.3e-33	62.39	PsbQ-like 2	[more]
AT4G21280.1	1.3e-09	24.35	photosystem II subunit QA	[more]
AT4G21280.2	1.3e-09	24.35	photosystem II subunit QA	[more]
AT3G01440.1	1.0e-06	23.97	PsbQ-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023222	PsbQ-like domain superfamily	GENE3D	1.20.120.290		coord: 41..184 e-value: 1.4E-38 score: 134.3
IPR023222	PsbQ-like domain superfamily	SUPERFAMILY	101112	Oxygen-evolving enhancer protein 3,	coord: 74..185
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 60..185 e-value: 2.2E-32 score: 112.4
IPR008797	Oxygen-evolving enhancer protein 3	PANTHER	PTHR33399	OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC	coord: 28..185
None	No IPR available	PANTHER	PTHR33399:SF5	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 2, CHLOROPLASTIC	coord: 28..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g009850.1	Lcy08g009850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity