Lcy08g009410 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g009410
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	MuDR family transposase
Location	Chr08: 23418986 .. 23419486 (-)
RNA-Seq Expression	Lcy08g009410
Synteny	Lcy08g009410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGAGGTCGATACTGGTATACACAGCGGGGGGACAGGCGCAAGCTCATCTCGGGAGGAGAGAAATTTTGATTTCATCAACGCATATGAGATTGACATGGTATTAGACAATGCCCCTGTATCGAAGGGGTGCACATTTTCCTGCAAAGAACATCTGAAGAAGACAGTGTATAACATAACACTAAAAGAAAGTTTCCAATTCAAGACTGTTAAATCCAACAGCAAGCAGTTCACGACATCATGCGTAGACGACGCGTGCCCATGGTATATACGTGCATCTTCATATCCCACAGGCCAACTTTTGATTGTCAGGAAATTTATCAATGAGCACAGGTGCTCCATTAATGCAGTTCATAATAATCACAGGCAAGCAACTACGAGTGTTGCGTGTGAGTATGCGAAAGTTATTATGAGAACCACTAACAAGATGCATTGCACACCTCGAGATATAATTGAGTATGCTAAGAAAAAGCATGGAGGGGGAGAGAGAAGGCTCTAA

mRNA sequence

ATGCTGGAGGTCGATACTGGTATACACAGCGGGGGGACAGGCGCAAGCTCATCTCGGGAGGAGAGAAATTTTGATTTCATCAACGCATATGAGATTGACATGGTATTAGACAATGCCCCTGTATCGAAGGGGTGCACATTTTCCTGCAAAGAACATCTGAAGAAGACAGTGTATAACATAACACTAAAAGAAAGTTTCCAATTCAAGACTGTTAAATCCAACAGCAAGCAGTTCACGACATCATGCGTAGACGACGCGTGCCCATGGTATATACGTGCATCTTCATATCCCACAGGCCAACTTTTGATTGTCAGGAAATTTATCAATGAGCACAGGTGCTCCATTAATGCAGTTCATAATAATCACAGGCAAGCAACTACGAGTGTTGCGTGTGAGTATGCGAAAGTTATTATGAGAACCACTAACAAGATGCATTGCACACCTCGAGATATAATTGAGTATGCTAAGAAAAAGCATGGAGGGGGAGAGAGAAGGCTCTAA

Coding sequence (CDS)

ATGCTGGAGGTCGATACTGGTATACACAGCGGGGGGACAGGCGCAAGCTCATCTCGGGAGGAGAGAAATTTTGATTTCATCAACGCATATGAGATTGACATGGTATTAGACAATGCCCCTGTATCGAAGGGGTGCACATTTTCCTGCAAAGAACATCTGAAGAAGACAGTGTATAACATAACACTAAAAGAAAGTTTCCAATTCAAGACTGTTAAATCCAACAGCAAGCAGTTCACGACATCATGCGTAGACGACGCGTGCCCATGGTATATACGTGCATCTTCATATCCCACAGGCCAACTTTTGATTGTCAGGAAATTTATCAATGAGCACAGGTGCTCCATTAATGCAGTTCATAATAATCACAGGCAAGCAACTACGAGTGTTGCGTGTGAGTATGCGAAAGTTATTATGAGAACCACTAACAAGATGCATTGCACACCTCGAGATATAATTGAGTATGCTAAGAAAAAGCATGGAGGGGGAGAGAGAAGGCTCTAA

Protein sequence

MLEVDTGIHSGGTGASSSREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQFTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVIMRTTNKMHCTPRDIIEYAKKKHGGGERRL

Homology

[Close]

BLAST of Lcy08g009410 vs. ExPASy TrEMBL
Match: A0A5A7U0B5 (MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G001610 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-22
Identity = 58/143 (40.56%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 18  SREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQ 77
           SR E     +NA+E    + +  V  G  F  K  LKK +Y + L  SF+  TV+SN   
Sbjct: 40  SRTENVIIDLNAFESPNTVIHIRV--GSMFRQKSVLKKAIYMLALNSSFELVTVRSNLTS 99

Query: 78  FTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVI 137
           F   C D +CPWY+RAS +    + IVRKF + H CS++ V N+H+QAT+S+  E  K+I
Sbjct: 100 FDIRCKDPSCPWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSSIVSECTKLI 159

Query: 138 MRTTNKMHCTPRDIIEYAKKKHG 161
            +T +K  C P ++I Y K  HG
Sbjct: 160 FKTNDKASCRPSNVINYMKIHHG 180

[Close]

BLAST of Lcy08g009410 vs. ExPASy TrEMBL
Match: A0A5D3E198 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001100 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-22
Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 18  SREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQ 77
           SR E     +NA+E    + +  V  G  F  K  LKK +Y + L  SF+  TV+SN   
Sbjct: 40  SRTENVIIDLNAFESPNTVIHIRV--GSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTS 99

Query: 78  FTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVI 137
           F   C D +CPWY+RAS +    + IVRKF + H CS++ V N+H+QAT+ +  E  K+I
Sbjct: 100 FDIRCKDPSCPWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLI 159

Query: 138 MRTTNKMHCTPRDIIEYAKKKHG 161
            +T +K  C P D+I Y K  HG
Sbjct: 160 FKTNDKAPCRPSDVINYMKIHHG 180

[Close]

BLAST of Lcy08g009410 vs. ExPASy TrEMBL
Match: A0A1S3C300 (uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.5e-22
Identity = 58/142 (40.85%), Postives = 81/142 (57.04%), Query Frame = 0


Query: 18  SREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQ 77
           SR E     +NA+E    + +  V  G  F  K  LKK +Y + L  SF+  TV+SN   
Sbjct: 115 SRTENVIIDLNAFESPNTVIHIRV--GSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTS 174

Query: 78  FTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVI 137
           F   C D +CPWY+RAS +    + IVRKFI  H CS++ V N+H+QAT+ +  E  K+I
Sbjct: 175 FDIRCKDPSCPWYLRASVFKRSDIWIVRKFIYTHMCSVDVVKNDHKQATSWIVSECTKLI 234

Query: 138 MRTTNKMHCTPRDIIEYAKKKH 160
            +T +K+ C P D+I Y K  H
Sbjct: 235 FKTNDKVPCRPSDVINYMKIHH 254

[Close]

BLAST of Lcy08g009410 vs. ExPASy TrEMBL
Match: A0A5A7VGR4 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00860 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.3e-21
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 27  INAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQFTTSCVDDA 86
           +NA+E    + +  V  G  F  K  LKK +Y + L  SF+  TV+SN   F   C D +
Sbjct: 131 LNAFESPNTVIHIRV--GSMFRQKTVLKKAIYMLALNSSFELVTVRSNRTSFDIRCKDPS 190

Query: 87  CPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVIMRTTNKMHC 146
           CPWY+RAS +    + I+RKF + H CS++ V N+H+QAT+ +  E  K+I +T +K  C
Sbjct: 191 CPWYLRASVFKKSDIWIIRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFKTNDKAPC 250

Query: 147 TPRDIIEYAKKKHG 161
            P D+I Y K  HG
Sbjct: 251 RPSDVINYMKIHHG 262

[Close]

BLAST of Lcy08g009410 vs. ExPASy TrEMBL
Match: A0A5A7V1Z6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G001170 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.0e-21
Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 18  SREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQ 77
           SR E     +NA+E    + +  V  G  FS K  LKK++Y + L  SF+  TV+SN   
Sbjct: 92  SRTENVIIDLNAFESPNTVIHVRV--GSMFSQKSVLKKSIYMLALNSSFELVTVRSNRTS 151

Query: 78  FTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVI 137
           F   C D +C WY+RAS +    + IVRKF + H CS++ V N+H+QAT+ +  E  K+I
Sbjct: 152 FDIRCKDPSCLWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLI 211

Query: 138 MRTTNKMHCTPRDIIEYAKKKHG 161
            +  +K  C P D+I Y K  HG
Sbjct: 212 FKMNDKAPCRPSDVINYMKIHHG 232

[Close]

BLAST of Lcy08g009410 vs. NCBI nr
Match: KAA0047666.1 (MuDR family transposase [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-22
Identity = 58/143 (40.56%), Postives = 82/143 (57.34%), Query Frame = 0


Query: 18  SREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQ 77
           SR E     +NA+E    + +  V  G  F  K  LKK +Y + L  SF+  TV+SN   
Sbjct: 40  SRTENVIIDLNAFESPNTVIHIRV--GSMFRQKSVLKKAIYMLALNSSFELVTVRSNLTS 99

Query: 78  FTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVI 137
           F   C D +CPWY+RAS +    + IVRKF + H CS++ V N+H+QAT+S+  E  K+I
Sbjct: 100 FDIRCKDPSCPWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSSIVSECTKLI 159

Query: 138 MRTTNKMHCTPRDIIEYAKKKHG 161
            +T +K  C P ++I Y K  HG
Sbjct: 160 FKTNDKASCRPSNVINYMKIHHG 180

[Close]

BLAST of Lcy08g009410 vs. NCBI nr
Match: TYK29863.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 5.6e-22
Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 18  SREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQ 77
           SR E     +NA+E    + +  V  G  F  K  LKK +Y + L  SF+  TV+SN   
Sbjct: 40  SRTENVIIDLNAFESPNTVIHIRV--GSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTS 99

Query: 78  FTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVI 137
           F   C D +CPWY+RAS +    + IVRKF + H CS++ V N+H+QAT+ +  E  K+I
Sbjct: 100 FDIRCKDPSCPWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLI 159

Query: 138 MRTTNKMHCTPRDIIEYAKKKHG 161
            +T +K  C P D+I Y K  HG
Sbjct: 160 FKTNDKAPCRPSDVINYMKIHHG 180

[Close]

BLAST of Lcy08g009410 vs. NCBI nr
Match: XP_008455803.1 (PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-22
Identity = 58/142 (40.85%), Postives = 81/142 (57.04%), Query Frame = 0


Query: 18  SREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQ 77
           SR E     +NA+E    + +  V  G  F  K  LKK +Y + L  SF+  TV+SN   
Sbjct: 115 SRTENVIIDLNAFESPNTVIHIRV--GSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTS 174

Query: 78  FTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVI 137
           F   C D +CPWY+RAS +    + IVRKFI  H CS++ V N+H+QAT+ +  E  K+I
Sbjct: 175 FDIRCKDPSCPWYLRASVFKRSDIWIVRKFIYTHMCSVDVVKNDHKQATSWIVSECTKLI 234

Query: 138 MRTTNKMHCTPRDIIEYAKKKH 160
            +T +K+ C P D+I Y K  H
Sbjct: 235 FKTNDKVPCRPSDVINYMKIHH 254

[Close]

BLAST of Lcy08g009410 vs. NCBI nr
Match: KAA0067552.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYJ97202.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-21
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 27  INAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQFTTSCVDDA 86
           +NA+E    + +  V  G  F  K  LKK +Y + L  SF+  TV+SN   F   C D +
Sbjct: 131 LNAFESPNTVIHIRV--GSMFRQKTVLKKAIYMLALNSSFELVTVRSNRTSFDIRCKDPS 190

Query: 87  CPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVIMRTTNKMHC 146
           CPWY+RAS +    + I+RKF + H CS++ V N+H+QAT+ +  E  K+I +T +K  C
Sbjct: 191 CPWYLRASVFKKSDIWIIRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFKTNDKAPC 250

Query: 147 TPRDIIEYAKKKHG 161
            P D+I Y K  HG
Sbjct: 251 RPSDVINYMKIHHG 262

[Close]

BLAST of Lcy08g009410 vs. NCBI nr
Match: KAA0061274.1 (uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-21
Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = 0


Query: 18  SREERNFDFINAYEIDMVLDNAPVSKGCTFSCKEHLKKTVYNITLKESFQFKTVKSNSKQ 77
           SR E     +NA+E    + +  V  G  FS K  LKK++Y + L  SF+  TV+SN   
Sbjct: 92  SRTENVIIDLNAFESPNTVIHVRV--GSMFSQKSVLKKSIYMLALNSSFELVTVRSNRTS 151

Query: 78  FTTSCVDDACPWYIRASSYPTGQLLIVRKFINEHRCSINAVHNNHRQATTSVACEYAKVI 137
           F   C D +C WY+RAS +    + IVRKF + H CS++ V N+H+QAT+ +  E  K+I
Sbjct: 152 FDIRCKDPSCLWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLI 211

Query: 138 MRTTNKMHCTPRDIIEYAKKKHG 161
            +  +K  C P D+I Y K  HG
Sbjct: 212 FKMNDKAPCRPSDVINYMKIHHG 232

The following BLAST results are available for this feature:

BLAST of Lcy08g009410 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g009410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0B5	1.6e-22	40.56	MuDR family transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3E198	2.7e-22	40.56	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3C300	3.5e-22	40.85	uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=...	[more]
A0A5A7VGR4	1.3e-21	40.30	Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7V1Z6	3.0e-21	39.86	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of Lcy08g009410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047666.1	3.3e-22	40.56	MuDR family transposase [Cucumis melo var. makuwa]	[more]
TYK29863.1	5.6e-22	40.56	MuDRA-like transposase [Cucumis melo var. makuwa]	[more]
XP_008455803.1	7.3e-22	40.85	PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo]	[more]
KAA0067552.1	2.8e-21	40.30	protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYJ97202.1 prot...	[more]
KAA0061274.1	6.1e-21	39.86	uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy08g009410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 41..100 e-value: 7.8E-13 score: 48.2
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 49..160
None	No IPR available	PANTHER	PTHR31973:SF90	OS12G0597300 PROTEIN	coord: 49..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g009410.1	Lcy08g009410.1	mRNA