Lcy08g009390 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g009390
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
LocationChr08: 23352420 .. 23352992 (-)
RNA-Seq ExpressionLcy08g009390
SyntenyLcy08g009390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAGATTAACAAAGTTCTGGAGGTCTCTGATTTCTCTCGTTGGTCGAGCGAACCCATGAGAAGAGAGGGCAGTTTCATACTGCAAACGGGATCCATGAGTGATCAAAGGGAAGCAGCTGTGGCGGCGATCCCAATGGAAGAGACTATGGAGGAAGATGAGCATAGAAAGAACAGGGAGAGAATGCAAGAGGAAGCTCAGAGAGCTCAAGACGGTAAAGCTCTGATGGTGGAAACAAAAGGAAAAAACCCAGAGAAGGGAGAAAACTCCTCAGATGCAGTAGCGGTGGCAAACCAAATGGAGAGTTTGAGAATAACAGCAAGGGAAAGAGCCAAAATGGTGGCTATAGATGACGAAGACCTGGAGGAAGCTGACGAGGATCTATCAGAAGCAATTATGTGCAAAATCCTCACGCCAAAATCGATCAGCCCGGAGATGTTCAAGACCTTTATGCCAAAAATATGGAACATTGAAGGAAGAATAAGAATAAAAACCATGGGAAAAAACATATTCAGATGTAACTTCAACCAGAGGAAGGATAAAGAGAGAATCCTAAGAGGAGGGCCATGA

mRNA sequence

ATGGTTGAGATTAACAAAGTTCTGGAGGTCTCTGATTTCTCTCGTTGGTCGAGCGAACCCATGAGAAGAGAGGGCAGTTTCATACTGCAAACGGGATCCATGAGTGATCAAAGGGAAGCAGCTGTGGCGGCGATCCCAATGGAAGAGACTATGGAGGAAGATGAGCATAGAAAGAACAGGGAGAGAATGCAAGAGGAAGCTCAGAGAGCTCAAGACGGTAAAGCTCTGATGGTGGAAACAAAAGGAAAAAACCCAGAGAAGGGAGAAAACTCCTCAGATGCAGTAGCGGTGGCAAACCAAATGGAGAGTTTGAGAATAACAGCAAGGGAAAGAGCCAAAATGGTGGCTATAGATGACGAAGACCTGGAGGAAGCTGACGAGGATCTATCAGAAGCAATTATGTGCAAAATCCTCACGCCAAAATCGATCAGCCCGGAGATGTTCAAGACCTTTATGCCAAAAATATGGAACATTGAAGGAAGAATAAGAATAAAAACCATGGGAAAAAACATATTCAGATGTAACTTCAACCAGAGGAAGGATAAAGAGAGAATCCTAAGAGGAGGGCCATGA

Coding sequence (CDS)

ATGGTTGAGATTAACAAAGTTCTGGAGGTCTCTGATTTCTCTCGTTGGTCGAGCGAACCCATGAGAAGAGAGGGCAGTTTCATACTGCAAACGGGATCCATGAGTGATCAAAGGGAAGCAGCTGTGGCGGCGATCCCAATGGAAGAGACTATGGAGGAAGATGAGCATAGAAAGAACAGGGAGAGAATGCAAGAGGAAGCTCAGAGAGCTCAAGACGGTAAAGCTCTGATGGTGGAAACAAAAGGAAAAAACCCAGAGAAGGGAGAAAACTCCTCAGATGCAGTAGCGGTGGCAAACCAAATGGAGAGTTTGAGAATAACAGCAAGGGAAAGAGCCAAAATGGTGGCTATAGATGACGAAGACCTGGAGGAAGCTGACGAGGATCTATCAGAAGCAATTATGTGCAAAATCCTCACGCCAAAATCGATCAGCCCGGAGATGTTCAAGACCTTTATGCCAAAAATATGGAACATTGAAGGAAGAATAAGAATAAAAACCATGGGAAAAAACATATTCAGATGTAACTTCAACCAGAGGAAGGATAAAGAGAGAATCCTAAGAGGAGGGCCATGA

Protein sequence

MVEINKVLEVSDFSRWSSEPMRREGSFILQTGSMSDQREAAVAAIPMEETMEEDEHRKNRERMQEEAQRAQDGKALMVETKGKNPEKGENSSDAVAVANQMESLRITARERAKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFMPKIWNIEGRIRIKTMGKNIFRCNFNQRKDKERILRGGP
Homology
BLAST of Lcy08g009390 vs. ExPASy TrEMBL
Match: A0A6J1CQJ5 (uncharacterized protein LOC111013413 OS=Momordica charantia OX=3673 GN=LOC111013413 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-10
Identity = 33/94 (35.11%), Postives = 64/94 (68.09%), Query Frame = 0

Query: 97  VANQMESLRITARERAKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFMPKIW 156
           ++ Q+E L++T  E+ ++  + ++++E+ D+    +++CK+LT K+I  E+FK  MP+IW
Sbjct: 6   LSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIW 65

Query: 157 NIEGRIRIKTMGKNIFRCNFNQRKDKERILRGGP 191
            +   ++I+++GKN+F C F   +DK +IL  GP
Sbjct: 66  -VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGP 98

BLAST of Lcy08g009390 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 32/98 (32.65%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 101 MESLRITARER--------AKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFM 160
           +E L++T  E+         ++  + ++++E+ D+    +++CK+LT K+I  E+FK  M
Sbjct: 10  VERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNIPGEVFKNMM 69

Query: 161 PKIWNIEGRIRIKTMGKNIFRCNFNQRKDKERILRGGP 191
           P+IW     ++I+++GKN+F C F   +DK +IL  GP
Sbjct: 70  PRIW-ANVNVKIESVGKNLFLCKFKTVRDKSKILNNGP 106

BLAST of Lcy08g009390 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 32/98 (32.65%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 101 MESLRITARER--------AKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFM 160
           +E L++T  E+         ++  + ++++E+ D+    +++CK+LT K+I  E+FK  M
Sbjct: 10  VERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNIPGEVFKNMM 69

Query: 161 PKIWNIEGRIRIKTMGKNIFRCNFNQRKDKERILRGGP 191
           P+IW     ++I+++GKN+F C F   +DK +IL  GP
Sbjct: 70  PRIW-ANVNVKIESVGKNLFLCKFKTVRDKSKILNNGP 106

BLAST of Lcy08g009390 vs. ExPASy TrEMBL
Match: A0A5C7IP31 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_005171 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-05
Identity = 25/67 (37.31%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 124 EADEDLSEAIMCKILTPKSISPEMFKTFMPKIWNIEGRIRIKTMGKNIFRCNFNQRKDKE 183
           E  + +S +++ KIL+ + ++ E F  FM KIW ++GR+ I+T+  NIF   F+   DK 
Sbjct: 32  EGSQMMSSSLVGKILSKQQVNREAFMAFMAKIWRVKGRLNIETVSHNIFAFQFSDPGDKR 91

Query: 184 RILRGGP 191
            ++ GGP
Sbjct: 92  MVIAGGP 98

BLAST of Lcy08g009390 vs. ExPASy TrEMBL
Match: A0A2I4HS91 (uncharacterized protein LOC109020925 OS=Juglans regia OX=51240 GN=LOC109020925 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 102 ESLRITARERAKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFMPKIWNIEGR 161
           E L++T  E  ++V + D+ L+EAD      +M  + + K I+ E FKT M  +W +EG 
Sbjct: 11  EGLKLT-EEEEQVVLLSDQSLQEADLKGKHCLMSLVTSDKLINIEAFKTTMALVWRLEGW 70

Query: 162 IRIKTMGKNIFRCNFNQRKDKERILRGGP 191
           +     G N F   F    DKE++L+G P
Sbjct: 71  VEFLVTGDNSFLIEFQILVDKEKVLKGRP 98

BLAST of Lcy08g009390 vs. NCBI nr
Match: XP_022143536.1 (uncharacterized protein LOC111013413 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-10
Identity = 33/94 (35.11%), Postives = 64/94 (68.09%), Query Frame = 0

Query: 97  VANQMESLRITARERAKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFMPKIW 156
           ++ Q+E L++T  E+ ++  + ++++E+ D+    +++CK+LT K+I  E+FK  MP+IW
Sbjct: 6   LSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIW 65

Query: 157 NIEGRIRIKTMGKNIFRCNFNQRKDKERILRGGP 191
            +   ++I+++GKN+F C F   +DK +IL  GP
Sbjct: 66  -VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGP 98

BLAST of Lcy08g009390 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-07
Identity = 32/98 (32.65%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 101 MESLRITARER--------AKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFM 160
           +E L++T  E+         ++  + ++++E+ D+    +++CK+LT K+I  E+FK  M
Sbjct: 10  VERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNIPGEVFKNMM 69

Query: 161 PKIWNIEGRIRIKTMGKNIFRCNFNQRKDKERILRGGP 191
           P+IW     ++I+++GKN+F C F   +DK +IL  GP
Sbjct: 70  PRIW-ANVNVKIESVGKNLFLCKFKTVRDKSKILNNGP 106

BLAST of Lcy08g009390 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 65.9 bits (159), Expect = 4.4e-07
Identity = 32/98 (32.65%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 101 MESLRITARER--------AKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFM 160
           +E L++T  E+         ++  + ++++E+ D+    +++CK+LT K+I  E+FK  M
Sbjct: 10  VERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNIPGEVFKNMM 69

Query: 161 PKIWNIEGRIRIKTMGKNIFRCNFNQRKDKERILRGGP 191
           P+IW     ++I+++GKN+F C F   +DK +IL  GP
Sbjct: 70  PRIW-ANVNVKIESVGKNLFLCKFKTVRDKSKILNNGP 106

BLAST of Lcy08g009390 vs. NCBI nr
Match: XP_023912061.1 (uncharacterized protein LOC112023668 [Quercus suber])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-06
Identity = 30/94 (31.91%), Postives = 60/94 (63.83%), Query Frame = 0

Query: 97  VANQMESLRITARERAKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFMPKIW 156
           V + +ES+++T  E  ++++I D+  +E  E  S++++ KILT K  +  + ++ + + W
Sbjct: 5   VIHSLESMKLTTEEE-EVISISDDCRKEEIESCSQSLIGKILTCKPFNKRVAQSTLKRAW 64

Query: 157 NIEGRIRIKTMGKNIFRCNFNQRKDKERILRGGP 191
           ++E +++I  +G N+F+  F    D ER+LRGGP
Sbjct: 65  DLENKVQIVEVGANLFQFKFQTEFDMERVLRGGP 97

BLAST of Lcy08g009390 vs. NCBI nr
Match: XP_030936339.1 (uncharacterized protein LOC115961503 [Quercus lobata])

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-06
Identity = 33/93 (35.48%), Postives = 55/93 (59.14%), Query Frame = 0

Query: 97  VANQMESLRITARERAKMVAIDDEDLEEADEDLSEAIMCKILTPKSISPEMFKTFMPKIW 156
           V N ME++++T +E  ++++I DE   EA ED + ++M + LT KS + +  K  M + W
Sbjct: 5   VVNGMENMKLTTKEE-EVISISDEGRLEAIEDCTLSLMGRFLTCKSFNKQATKNTMRRAW 64

Query: 157 NIEGRIRIKTMGKNIFRCNFNQRKDKERILRGG 190
            +E  + I  +G N+F+  F    D  R+LRGG
Sbjct: 65  GLEDNLHITEVGPNLFQFKFTSEFDLNRVLRGG 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CQJ51.2e-1035.11uncharacterized protein LOC111013413 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DL642.1e-0732.65uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DQC92.1e-0732.65uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A5C7IP312.6e-0537.31Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_005171 PE=4 SV=1[more]
A0A2I4HS911.0e-0434.83uncharacterized protein LOC109020925 OS=Juglans regia OX=51240 GN=LOC109020925 P... [more]
Match NameE-valueIdentityDescription
XP_022143536.12.5e-1035.11uncharacterized protein LOC111013413 [Momordica charantia][more]
XP_022154990.14.4e-0732.65uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022154991.14.4e-0732.65uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_023912061.13.7e-0631.91uncharacterized protein LOC112023668 [Quercus suber][more]
XP_030936339.13.7e-0635.48uncharacterized protein LOC115961503 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..73
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 122..190
e-value: 3.3E-9
score: 36.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g009390.1Lcy08g009390.1mRNA