Lcy08g009270 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g009270
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	40S ribosomal protein S13
Location	Chr08: 22677272 .. 22677459 (+)
RNA-Seq Expression	Lcy08g009270
Synteny	Lcy08g009270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTAGCTCCTAACATCCCGGAGGATCTTTACCATCTCATGAAGAAAGTTGTTTCAATCAAAAAGCATTTGGAGAGAAATAGGAAAGACAACGATTCCAAGTTCAAGATAATTTTGGTGGAGAGCATGATCCATCGCCTGGCCCGGTACTACAAGAAGACAAAGAAGTTTCCCCCTATTTGGAAGTAG

mRNA sequence

GGCTAGCTCCTAACATCCCGGAGGATCTTTACCATCTCATGAAGAAAGTTGTTTCAATCAAAAAGCATTTGGAGAGAAATAGGAAAGACAACGATTCCAAGTTCAAGATAATTTTGGTGGAGAGCATGATCCATCGCCTGGCCCGGTACTACAAGAAGACAAAGAAGTTTCCCCCTATTTGGAAGTAG

Coding sequence (CDS)

GGCTAGCTCCTAACATCCCGGAGGATCTTTACCATCTCATGAAGAAAGTTGTTTCAATCAAAAAGCATTTGGAGAGAAATAGGAAAGACAACGATTCCAAGTTCAAGATAATTTTGGTGGAGAGCATGATCCATCGCCTGGCCCGGTACTACAAGAAGACAAAGAAGTTTCCCCCTATTTGGAAGTAG

Protein sequence

LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIWK

Homology

[Close]

BLAST of Lcy08g009270 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.6e-24
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK V+I+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.6e-24
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK V+I+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.3e-23
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLER RKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy Swiss-Prot
Match: Q69UI2 (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117200 PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 6.2e-22
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLY L+KK V+I+KHLERNRKD DSKF++ILVES IHRLARYYK+TKK PP W
Sbjct: 80  LAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy TrEMBL
Match: A0A6J1HYG9 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy TrEMBL
Match: A0A1S3UTL9 (40S ribosomal protein S13 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768630 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy TrEMBL
Match: M5X0Z4 (Ribosomal_S13_N domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G144200 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. ExPASy TrEMBL
Match: M5WJE0 (Ribosomal_S13_N domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G286400 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. NCBI nr
Match: PNY08741.1 (40S ribosomal protein s13-like [Trifolium pratense] >PNY16535.1 40S ribosomal protein s13-like [Trifolium pratense] >PNY16820.1 40S ribosomal protein s13-like [Trifolium pratense])

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. NCBI nr
Match: XP_004511653.1 (40S ribosomal protein S13-like [Cicer arietinum] >GAU20718.1 hypothetical protein TSUD_231320 [Trifolium subterraneum] >GAU20719.1 hypothetical protein TSUD_231330 [Trifolium subterraneum])

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. NCBI nr
Match: KAF5453380.1 (hypothetical protein F2P56_028285, partial [Juglans regia])

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 114 LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 173

Query: 61  K 62
           K
Sbjct: 174 K 174

[Close]

BLAST of Lcy08g009270 vs. NCBI nr
Match: XP_010053902.1 (40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal protein S13 [Eucalyptus grandis] >XP_030468523.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030468524.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030529924.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030529925.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030544418.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_031376603.1 40S ribosomal protein S13 [Punica granatum] >XP_031381691.1 40S ribosomal protein S13 [Punica granatum] >KAF3439993.1 hypothetical protein FNV43_RR18271 [Rhamnella rubrinervis] >KAF8020424.1 hypothetical protein BT93_G0976 [Corymbia citriodora subsp. variegata] >PON34614.1 Ribosomal protein [Parasponia andersonii] >KAF3440239.1 hypothetical protein FNV43_RR18522 [Rhamnella rubrinervis] >KAF8020425.1 hypothetical protein BT93_G0977 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK VSI+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 110.2 bits (274), Expect = 6.1e-25
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK V+I+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

[Close]

BLAST of Lcy08g009270 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 110.2 bits (274), Expect = 6.1e-25
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 1   LAPNIPEDLYHLMKKVVSIKKHLERNRKDNDSKFKIILVESMIHRLARYYKKTKKFPPIW 60
           LAP IPEDLYHL+KK V+I+KHLERNRKD DSKF++ILVES IHRLARYYKKTKK PP+W
Sbjct: 80  LAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 139

Query: 61  K 62
           K
Sbjct: 140 K 140

The following BLAST results are available for this feature:

BLAST of Lcy08g009270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	3.9e-24	83.61	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59223	8.6e-24	81.97	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P59224	8.6e-24	81.97	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	4.3e-23	81.97	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
Q69UI2	6.2e-22	78.69	40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of Lcy08g009270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KV63	1.4e-21	83.61	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ...	[more]
A0A6J1HYG9	1.4e-21	83.61	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 ...	[more]
A0A1S3UTL9	1.4e-21	83.61	40S ribosomal protein S13 OS=Vigna radiata var. radiata OX=3916 GN=LOC106768630 ...	[more]
M5X0Z4	1.4e-21	83.61	Ribosomal_S13_N domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_2G1...	[more]
M5WJE0	1.4e-21	83.61	Ribosomal_S13_N domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G2...	[more]

BLAST of Lcy08g009270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143980.1	2.9e-21	83.61	40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom...	[more]
PNY08741.1	2.9e-21	83.61	40S ribosomal protein s13-like [Trifolium pratense] >PNY16535.1 40S ribosomal pr...	[more]
XP_004511653.1	2.9e-21	83.61	40S ribosomal protein S13-like [Cicer arietinum] >GAU20718.1 hypothetical protei...	[more]
KAF5453380.1	2.9e-21	83.61	hypothetical protein F2P56_028285, partial [Juglans regia]	[more]
XP_010053902.1	2.9e-21	83.61	40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal pro...	[more]

BLAST of Lcy08g009270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60770.1	6.1e-25	81.97	Ribosomal protein S13/S15	[more]
AT4G00100.1	6.1e-25	81.97	ribosomal protein S13A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 2..61 e-value: 0.0044 score: -2.2
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 5..55 e-value: 3.2E-12 score: 46.5
None	No IPR available	GENE3D	1.10.287.10		coord: 3..61 e-value: 7.4E-30 score: 105.1
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..61
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..61
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 4..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g009270.1	Lcy08g009270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome