Lcy08g009170 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy08g009170
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase
Location	Chr08: 21203245 .. 21204681 (+)
RNA-Seq Expression	Lcy08g009170
Synteny	Lcy08g009170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGGGCGTTTCTGGGAAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTTATGGGTATTACATTAATTTTGGTTAATTATTGAGGAAGTTATGAGTATTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTGAGTGACAAAATGAATTTTGAAAATTGTTTCCAATGGTTGTTCATGTTTAGACGTTTTATATGCTTTTCTATGAATGATACATGATTTCTATGAACGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGGTTAATGACTTTATGACAAGTAGTTGAAACGATATCTTTTAAAGTAAAGTATGTATTAGCAAGTATTATTTTTTAAAGATTTTCAGTTTTTTCACGAGCAAGCTGAGTACACTTATGTTTTAAAAAAGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTAAGATATTGAGCCCGAAGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGAGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGCACGCTAAAATGTTTGATGTACTTGATATGCCTTGCTAGATATTTAATAACGTACTTGCGAGTTATTTGAGAAAGCTTTTATCGTTACACGTTTATGTTAAACGCTTGATTGAACAGATTTATACGCTTAAAGGTTTATCACGTGTTCCGATTCGCAAATATACAGTTTTTAAAGCTAGTCACTCACTGGGCTTCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATCGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGCGATATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGAAAGTTTTTTTTCAGGGATTCCGCTGTGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAA

mRNA sequence

ATGTTCGGGGCGTTTCTGGGAAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTTCAGCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAA

Coding sequence (CDS)

ATGTTCGGGGCGTTTCTGGGAAAATCGGTTGGGAATCTCGTTTTCATTTCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTTCAGCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAA

Protein sequence

MFGAFLGKSVGNLVFISSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVQRSGGSAGIVRGGRCPLASRHLSG

Homology

[Close]

BLAST of Lcy08g009170 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.9e-14
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 11  GNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELY 70
           GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY
Sbjct: 63  GNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELY 122

[Close]

BLAST of Lcy08g009170 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.9e-14
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 11  GNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELY 70
           GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY
Sbjct: 63  GNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELY 122

[Close]

BLAST of Lcy08g009170 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.9e-14
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 22  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVQ--------R 81
           PL TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+          R
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 82  SG------GSAGIVRG 84
           +       GSAGIVRG
Sbjct: 382 AASYVCWEGSAGIVRG 397

[Close]

BLAST of Lcy08g009170 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.9e-14
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 22  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVQ--------R 81
           PL TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+          R
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 82  SG------GSAGIVRG 84
           +       GSAGIVRG
Sbjct: 382 AASYVCWEGSAGIVRG 397

[Close]

BLAST of Lcy08g009170 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 22 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVQRSGGSAGIV 81
          PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+       AGIV
Sbjct: 20 PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHV--EMFWLAGIV 78

Query: 82 R 83
          R
Sbjct: 80 R 78

[Close]

BLAST of Lcy08g009170 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 22  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVQ--------R 81
           PL TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+          R
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 82  SG------GSAGIVRG 84
           +       GSAGIVRG
Sbjct: 382 AASYVCWEGSAGIVRG 397

[Close]

BLAST of Lcy08g009170 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 22  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVQ--------R 81
           PL TLSVLRDNDAVVEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+          R
Sbjct: 322 PLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLELYFESVHVEMLFYKPSDAR 381

Query: 82  SG------GSAGIVRG 84
           +       GSAGIVRG
Sbjct: 382 AASYVCWEGSAGIVRG 397

[Close]

BLAST of Lcy08g009170 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 11  GNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELY 70
           GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY
Sbjct: 63  GNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELY 122

[Close]

BLAST of Lcy08g009170 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 11  GNLVFISSGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELY 70
           GN   + SG +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY
Sbjct: 63  GNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELY 122

[Close]

BLAST of Lcy08g009170 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.7e-13
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 22 PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVQRSGGSAGIV 81
          PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+       AGIV
Sbjct: 20 PLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLELYVEFVHV--EMFWLAGIV 78

Query: 82 R 83
          R
Sbjct: 80 R 78

The following BLAST results are available for this feature:

BLAST of Lcy08g009170 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy08g009170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9N3	5.9e-14	69.70	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]
A0A5D3DSY7	5.9e-14	69.70	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7T9P7	5.9e-14	65.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000...	[more]
A0A5D3DR18	5.9e-14	65.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032...	[more]
A0A5D3DX39	1.3e-13	75.41	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]

BLAST of Lcy08g009170 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25935.1	1.2e-13	65.79	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040194.1	1.2e-13	65.79	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062409.1	1.2e-13	69.70	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK26572.1	1.2e-13	69.70	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK27998.1	2.7e-13	75.41	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Lcy08g009170 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy08g009170.1	Lcy08g009170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding