Lcy08g008900 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g008900
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
LocationChr08: 18384495 .. 18384764 (+)
RNA-Seq ExpressionLcy08g008900
SyntenyLcy08g008900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGCGAAGATGAGTTGGCGAATTATTAAAAATCCTAACTCCCTGCTTTCTAAAGTGCTCAAGGGTAGCTGTTTTCTCAAAGCTCCCCTTGGATCAAACCCCTCGCTCACTTGGAGGAGCATTATTTGGGGTCAGGATCTTTTCAAGAGGGGCTATAGATGGAAGATTGGAAGTGGCAGTCACATTAGAATTGATAAGGATCCATGGATATCCAGGAAAAATTCTTGTGTGCCTTCGTGGGTTGACACCTCTTTAAAAGGGCATTAA

mRNA sequence

ATGCTGGCGAAGATGAGTTGGCGAATTATTAAAAATCCTAACTCCCTGCTTTCTAAAGTGCTCAAGGGTAGCTGTTTTCTCAAAGCTCCCCTTGGATCAAACCCCTCGCTCACTTGGAGGAGCATTATTTGGGGTCAGGATCTTTTCAAGAGGGGCTATAGATGGAAGATTGGAAGTGGCAGTCACATTAGAATTGATAAGGATCCATGGATATCCAGGAAAAATTCTTGTGTGCCTTCGTGGGTTGACACCTCTTTAAAAGGGCATTAA

Coding sequence (CDS)

ATGCTGGCGAAGATGAGTTGGCGAATTATTAAAAATCCTAACTCCCTGCTTTCTAAAGTGCTCAAGGGTAGCTGTTTTCTCAAAGCTCCCCTTGGATCAAACCCCTCGCTCACTTGGAGGAGCATTATTTGGGGTCAGGATCTTTTCAAGAGGGGCTATAGATGGAAGATTGGAAGTGGCAGTCACATTAGAATTGATAAGGATCCATGGATATCCAGGAAAAATTCTTGTGTGCCTTCGTGGGTTGACACCTCTTTAAAAGGGCATTAA

Protein sequence

MLAKMSWRIIKNPNSLLSKVLKGSCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRWKIGSGSHIRIDKDPWISRKNSCVPSWVDTSLKGH
Homology
BLAST of Lcy08g008900 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-10
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKG-----SCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           +LAK S+RII  P++LLS++L+      S  ++  +G+ PS  WRSII G++L  RG   
Sbjct: 69  LLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLR 128

Query: 61  KIGSGSHIRIDKDPWISRKNSCVP 80
            IG G H ++  D WI  +    P
Sbjct: 129 TIGDGIHTKVWLDRWIMDETPLPP 152

BLAST of Lcy08g008900 vs. ExPASy TrEMBL
Match: A0A6J1DRA0 (uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022423 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKG-----SCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           MLAK SWRI+++P+SLL+K L+G       FL+A LG+ PS  WRSI+WG+DLFK+GYRW
Sbjct: 530 MLAKQSWRILRHPDSLLAKTLRGKYFKTGSFLQAKLGARPSYAWRSILWGRDLFKKGYRW 589

Query: 61  KIGSGSHIRIDKDPWISRKNSCVP 80
           K+G+G  I +  DPW+ R  +  P
Sbjct: 590 KVGNGFSINLSSDPWLPRDGNFSP 613

BLAST of Lcy08g008900 vs. ExPASy TrEMBL
Match: A0A6J1CV63 (uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014662 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-19
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKGSC-----FLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           MLAK SW+IIKNPNSLL +VL+G       F+ A LGSNPS  WRSI+WG++LF +G RW
Sbjct: 153 MLAKQSWQIIKNPNSLLVRVLRGKYFKHGNFMTAELGSNPSFVWRSILWGKELFVKGIRW 212

Query: 61  KIGSGSHIRIDKDPWISRKNSCVP 80
           +IG+G  + I  DPWI R+ S +P
Sbjct: 213 RIGNGFSVIIGSDPWILREGSSLP 236

BLAST of Lcy08g008900 vs. ExPASy TrEMBL
Match: A0A803PQ30 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-16
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 1    MLAKMSWRIIKNPNSLLSKVLK-----GSCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
            +LAK +WRI  NP+SLLS+VLK      + FL+A LG +PSLTW+ I W ++L  +G RW
Sbjct: 1310 LLAKQAWRIYDNPDSLLSRVLKSRYFPNNTFLEASLGHSPSLTWQGIHWARELLLKGLRW 1369

Query: 61   KIGSGSHIRIDKDPWISRKNSCVP 80
            K+G G HI+ D DPWI   N+ +P
Sbjct: 1370 KVGDGRHIQSDYDPWIPGHNTFLP 1393

BLAST of Lcy08g008900 vs. ExPASy TrEMBL
Match: A0A6J1CUD6 (uncharacterized protein LOC111014663 OS=Momordica charantia OX=3673 GN=LOC111014663 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-16
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKG-----SCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           MLAK SWRI+++P S L K L+G       FLKA LG++PS  WRSI+W ++LF++GY+W
Sbjct: 154 MLAKQSWRILRHPTSPLVKTLRGKYFRTGSFLKAKLGNSPSYAWRSILWERELFEKGYQW 213

Query: 61  KIGSGSHIRIDKDPWISRKNSCVPSWVDTSLKGH 90
           ++G+G  I I  D WI R +   P +  +S+  H
Sbjct: 214 RVGNGYSISIGLDSWIHRDSPYRPVFTPSSIFEH 247

BLAST of Lcy08g008900 vs. ExPASy TrEMBL
Match: A0A803P614 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 1    MLAKMSWRIIKNPNSLLSKVLK-----GSCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
            +LAK +WR+++ P+SLL K+LK      + FL AP G +PSLTW+ IIWG+ L  +G RW
Sbjct: 1325 LLAKQAWRLLEKPDSLLGKLLKSRYFPNNDFLHAPHGHSPSLTWQGIIWGRALLLKGLRW 1384

Query: 61   KIGSGSHIRIDKDPWISRKNSCVPSW 82
            KIG G HIRI  DPWI   ++  P++
Sbjct: 1385 KIGEGRHIRIATDPWIPGCDTFTPTF 1410

BLAST of Lcy08g008900 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-19
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKG-----SCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           MLAK SWRI+++P+SLL+K L+G       FL+A LG+ PS  WRSI+WG+DLFK+GYRW
Sbjct: 530 MLAKQSWRILRHPDSLLAKTLRGKYFKTGSFLQAKLGARPSYAWRSILWGRDLFKKGYRW 589

Query: 61  KIGSGSHIRIDKDPWISRKNSCVP 80
           K+G+G  I +  DPW+ R  +  P
Sbjct: 590 KVGNGFSINLSSDPWLPRDGNFSP 613

BLAST of Lcy08g008900 vs. NCBI nr
Match: XP_022145148.1 (uncharacterized protein LOC111014662 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 3.1e-19
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKGSC-----FLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           MLAK SW+IIKNPNSLL +VL+G       F+ A LGSNPS  WRSI+WG++LF +G RW
Sbjct: 153 MLAKQSWQIIKNPNSLLVRVLRGKYFKHGNFMTAELGSNPSFVWRSILWGKELFVKGIRW 212

Query: 61  KIGSGSHIRIDKDPWISRKNSCVP 80
           +IG+G  + I  DPWI R+ S +P
Sbjct: 213 RIGNGFSVIIGSDPWILREGSSLP 236

BLAST of Lcy08g008900 vs. NCBI nr
Match: XP_030502375.1 (uncharacterized protein LOC115717530 [Cannabis sativa])

HSP 1 Score: 95.1 bits (235), Expect = 3.2e-16
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLK-----GSCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           +LAK +WRI  NP+SLLS+VLK      + FL+A LG +PSLTW+ I W ++L  +G RW
Sbjct: 289 LLAKQAWRIYDNPDSLLSRVLKSRYFPNNTFLEASLGHSPSLTWQGIHWARELLLKGLRW 348

Query: 61  KIGSGSHIRIDKDPWISRKNSCVP 80
           K+G G HI+ D DPWI   N+ +P
Sbjct: 349 KVGDGRHIQSDYDPWIPGHNTFLP 372

BLAST of Lcy08g008900 vs. NCBI nr
Match: XP_022145149.1 (uncharacterized protein LOC111014663 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 5.4e-16
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKG-----SCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           MLAK SWRI+++P S L K L+G       FLKA LG++PS  WRSI+W ++LF++GY+W
Sbjct: 154 MLAKQSWRILRHPTSPLVKTLRGKYFRTGSFLKAKLGNSPSYAWRSILWERELFEKGYQW 213

Query: 61  KIGSGSHIRIDKDPWISRKNSCVPSWVDTSLKGH 90
           ++G+G  I I  D WI R +   P +  +S+  H
Sbjct: 214 RVGNGYSISIGLDSWIHRDSPYRPVFTPSSIFEH 247

BLAST of Lcy08g008900 vs. NCBI nr
Match: XP_030479238.1 (uncharacterized protein LOC115696478 [Cannabis sativa])

HSP 1 Score: 91.3 bits (225), Expect = 4.6e-15
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKG-----SCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           MLAK +WR++ NPNSLL+ +LK      + FL+A LG  PS TW S+IWG+DL  RG  W
Sbjct: 772 MLAKQAWRVLSNPNSLLTSILKAKYFKLNNFLEAKLGHTPSYTWSSLIWGRDLLIRGLLW 831

Query: 61  KIGSGSHIRIDKDPWI 72
           K+G+G  IR  +DPWI
Sbjct: 832 KVGNGCSIRTFQDPWI 847

BLAST of Lcy08g008900 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-11
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKG-----SCFLKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           +LAK S+RII  P++LLS++L+      S  ++  +G+ PS  WRSII G++L  RG   
Sbjct: 69  LLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLR 128

Query: 61  KIGSGSHIRIDKDPWISRKNSCVP 80
            IG G H ++  D WI  +    P
Sbjct: 129 TIGDGIHTKVWLDRWIMDETPLPP 152

BLAST of Lcy08g008900 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.3e-11
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0

Query: 1   MLAKMSWRIIKNPNSLLSKVLKGSCF-----LKAPLGSNPSLTWRSIIWGQDLFKRGYRW 60
           +L K  WR++  P SL++KV K   F     L APLGS PS  W+SI   Q++ ++G R 
Sbjct: 68  LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127

Query: 61  KIGSGSHIRIDKDPWISRK 75
            +G+G  I I +  W+  K
Sbjct: 128 VVGNGEDIIIWRHKWLDSK 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P932954.6e-1039.29Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A6J1DRA01.5e-1953.57uncharacterized protein LOC111022423 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CV631.5e-1957.14uncharacterized protein LOC111014662 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A803PQ301.5e-1651.19Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1CUD62.6e-1645.74uncharacterized protein LOC111014663 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A803P6143.4e-1650.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022155286.13.1e-1953.57uncharacterized protein LOC111022423 [Momordica charantia][more]
XP_022145148.13.1e-1957.14uncharacterized protein LOC111014662 [Momordica charantia][more]
XP_030502375.13.2e-1651.19uncharacterized protein LOC115717530 [Cannabis sativa][more]
XP_022145149.15.4e-1645.74uncharacterized protein LOC111014663 [Momordica charantia][more]
XP_030479238.14.6e-1553.95uncharacterized protein LOC115696478 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
ATMG00310.13.3e-1139.29RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT4G29090.14.3e-1139.24Ribonuclease H-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g008900.1Lcy08g008900.1mRNA