Lcy08g008780 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g008780
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
LocationChr08: 17813743 .. 17814177 (+)
RNA-Seq ExpressionLcy08g008780
SyntenyLcy08g008780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCAGGGGCCATGGCTCTTCGACAAATTCCTGCTCGTGCTTTCGAAGCCCATTCCGATGGTGAAGCCTACAACCATGGAGTTCAAATTCGCAACTTTTTGGGTTCATTTCTGCGAACTCCCGATGGATCTCTACCATTGGTCGATGGCGGAGAGATTGGGCAATGCGATCGGCCAGTTCCAGGAGTACGACAATGGAGGTCGAGGGTACGGTTGGAAGGAAAGTCTTCGAGTTCGTGTTACCATTGATATTACGCACCCTCCGCATCACGGCATTAAGGTTCGGCTTGATGAACCATTGGGTAGTGTTTGGACTCCTATTAAATATGATAAGCTTCCTGAAATTTGTGCTTCTTGTGGCCGAATTGGGCATGGGACAAAAGATTGCAGCTCTTTCTATCTTGATGATGGTTCTTCCTCTCGACGGCCGTAA

mRNA sequence

ATGCGTCAGGGGCCATGGCTCTTCGACAAATTCCTGCTCGTGCTTTCGAAGCCCATTCCGATGGTGAAGCCTACAACCATGGAGTTCAAATTCGCAACTTTTTGGGTTCATTTCTGCGAACTCCCGATGGATCTCTACCATTGGTCGATGGCGGAGAGATTGGGCAATGCGATCGGCCAGTTCCAGGAGTACGACAATGGAGGTCGAGGGTACGGTTGGAAGGAAAGTCTTCGAGTTCGTGTTACCATTGATATTACGCACCCTCCGCATCACGGCATTAAGGTTCGGCTTGATGAACCATTGGGTAGTGTTTGGACTCCTATTAAATATGATAAGCTTCCTGAAATTTGTGCTTCTTGTGGCCGAATTGGGCATGGGACAAAAGATTGCAGCTCTTTCTATCTTGATGATGGTTCTTCCTCTCGACGGCCGTAA

Coding sequence (CDS)

ATGCGTCAGGGGCCATGGCTCTTCGACAAATTCCTGCTCGTGCTTTCGAAGCCCATTCCGATGGTGAAGCCTACAACCATGGAGTTCAAATTCGCAACTTTTTGGGTTCATTTCTGCGAACTCCCGATGGATCTCTACCATTGGTCGATGGCGGAGAGATTGGGCAATGCGATCGGCCAGTTCCAGGAGTACGACAATGGAGGTCGAGGGTACGGTTGGAAGGAAAGTCTTCGAGTTCGTGTTACCATTGATATTACGCACCCTCCGCATCACGGCATTAAGGTTCGGCTTGATGAACCATTGGGTAGTGTTTGGACTCCTATTAAATATGATAAGCTTCCTGAAATTTGTGCTTCTTGTGGCCGAATTGGGCATGGGACAAAAGATTGCAGCTCTTTCTATCTTGATGATGGTTCTTCCTCTCGACGGCCGTAA

Protein sequence

MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQFQEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASCGRIGHGTKDCSSFYLDDGSSSRRP
Homology
BLAST of Lcy08g008780 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.9e-33
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 0

Query: 1   MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQ 60
           M+ GPW FDK L+VL KP      + +EF    FW+H  +LPM   + +MA RLGNAIG 
Sbjct: 95  MKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGN 154

Query: 61  FQEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASC 120
           F + D   +G+ W  SLR+RV IDIT P   GIK+ +D P+G  W PI+Y++LP+ C  C
Sbjct: 155 FVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFC 214

Query: 121 GRIGHGTKDCSSFYLDDGSSSR 143
           G IGH + DC + YL     SR
Sbjct: 215 GVIGHSSHDCDARYLAAQDDSR 236

BLAST of Lcy08g008780 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 59/141 (41.84%), Postives = 88/141 (62.41%), Query Frame = 0

Query: 1   MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQ 60
           +R GPW FD+ L+++  P+ + KP  M+F+  + WVHF +L +   + +MA RLGNAIG 
Sbjct: 96  LRMGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGL 155

Query: 61  FQEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASC 120
           F++ ++    + W   LRVRV  D+  P H GIK+ LD P+G  W PI+Y++LP+    C
Sbjct: 156 FEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHC 215

Query: 121 GRIGHGTKDCSSFYLDDGSSS 142
           GR+ H  KDCS   +D  S +
Sbjct: 216 GRLDHILKDCSDCCVDSVSKN 236

BLAST of Lcy08g008780 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 0

Query: 2   RQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQF 61
           + GPW FD+ L++++KP+ ++ P+ ++F     WV F +LP+      MA RLGNA+G F
Sbjct: 97  KSGPWTFDRTLVLINKPVALIPPSELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGF 156

Query: 62  QEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASCG 121
           +E D       W  +LRVRV +DI+ P   GIK+ LD P+G  W PI+Y++LP+ C  CG
Sbjct: 157 EEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG 216

BLAST of Lcy08g008780 vs. ExPASy TrEMBL
Match: A0A803QFF2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 52/140 (37.14%), Postives = 71/140 (50.71%), Query Frame = 0

Query: 1   MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQ 60
           + Q PW F    +VL KP P+   T  + KF+ FW+    LP       +A  LGN IG+
Sbjct: 90  LTQEPWHFQNHHIVLYKPTPLQNVTPSDLKFSPFWIQVYRLPFLSKSRGLAVALGNIIGE 149

Query: 61  FQEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASC 120
           F E        GW   LR+RV ID+T P   G  +RL +     W   +Y++LPE C  C
Sbjct: 150 FLEVYTDSLNEGWGPFLRIRVNIDVTKPLRRGRNIRLQQVKDKFWVEFRYERLPEWCMEC 209

Query: 121 GRIGHGTKDCSSF--YLDDG 139
           G +GH  + C +F   LD+G
Sbjct: 210 GCLGHPYQKCQTFLELLDNG 229

BLAST of Lcy08g008780 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 0

Query: 1   MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQ 60
           +  GPW F+K LLVL+ P    +P  M F F  FW+    +P +     MA  LG  +G 
Sbjct: 92  LSSGPWTFNKSLLVLTSPTATNQPLDMNFNFCAFWIQIHNIPFECISTEMANILGAKLGD 151

Query: 61  FQEYDNGGRGYGWK-ESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICAS 120
            +E +  G   GW    +RVRV ID++ P   GIK++  +    +W P++Y+KLP+ C  
Sbjct: 152 VEEIEGDGAD-GWAGPFIRVRVKIDVSKPLRRGIKLKNSDG-KDIWCPLRYEKLPDFCYE 211

Query: 121 CGRIGHGTKDC 131
           CG+IGH  ++C
Sbjct: 212 CGKIGHSGREC 220

BLAST of Lcy08g008780 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 6.1e-33
Identity = 67/142 (47.18%), Postives = 88/142 (61.97%), Query Frame = 0

Query: 1   MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQ 60
           M+ GPW FDK L+VL KP      + +EF    FW+H  +LPM   + +MA RLGNAIG 
Sbjct: 95  MKTGPWFFDKALIVLQKPCSSKNISELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGN 154

Query: 61  FQEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASC 120
           F + D   +G+ W  SLR+RV IDIT P   GIK+ +D P+G  W PI+Y++LP+ C  C
Sbjct: 155 FVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFC 214

Query: 121 GRIGHGTKDCSSFYLDDGSSSR 143
           G IGH + DC + YL     SR
Sbjct: 215 GVIGHSSHDCDARYLAAQDDSR 236

BLAST of Lcy08g008780 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-30
Identity = 59/141 (41.84%), Postives = 88/141 (62.41%), Query Frame = 0

Query: 1   MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQ 60
           +R GPW FD+ L+++  P+ + KP  M+F+  + WVHF +L +   + +MA RLGNAIG 
Sbjct: 96  LRMGPWTFDRALIIIDNPVSLTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGL 155

Query: 61  FQEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASC 120
           F++ ++    + W   LRVRV  D+  P H GIK+ LD P+G  W PI+Y++LP+    C
Sbjct: 156 FEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHC 215

Query: 121 GRIGHGTKDCSSFYLDDGSSS 142
           GR+ H  KDCS   +D  S +
Sbjct: 216 GRLDHILKDCSDCCVDSVSKN 236

BLAST of Lcy08g008780 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-24
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 0

Query: 2   RQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQF 61
           + GPW FD+ L++++KP+ ++ P+ ++F     WV F +LP+      MA RLGNA+G F
Sbjct: 97  KSGPWTFDRTLVLINKPVALIPPSELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGF 156

Query: 62  QEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASCG 121
           +E D       W  +LRVRV +DI+ P   GIK+ LD P+G  W PI+Y++LP+ C  CG
Sbjct: 157 EEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG 216

BLAST of Lcy08g008780 vs. NCBI nr
Match: XP_028124075.1 (uncharacterized protein LOC114321128 [Camellia sinensis])

HSP 1 Score: 118.6 bits (296), Expect = 4.4e-23
Identity = 50/130 (38.46%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 1   MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQ 60
           +  GPW FDK LL+L +  P V+P+ ++     FWVH C LP+ L +  + + +GNA+GQ
Sbjct: 93  LSNGPWTFDKHLLMLGEMDPNVQPSDIQLTGVQFWVHVCNLPLVLMNKQVGQIVGNAVGQ 152

Query: 61  FQEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASC 120
           F + D    G  W  ++R+RV ID+  P   G+K+ L      +W   KY++LP  C  C
Sbjct: 153 FIDMDYEDGGIAWGRTMRIRVAIDVRKPLRRGMKLALSS-ADPIWVDFKYERLPIYCYFC 212

Query: 121 GRIGHGTKDC 131
           GR+GH  ++C
Sbjct: 213 GRLGHSDREC 221

BLAST of Lcy08g008780 vs. NCBI nr
Match: XP_028071384.1 (uncharacterized protein LOC114273772 [Camellia sinensis])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 48/132 (36.36%), Postives = 78/132 (59.09%), Query Frame = 0

Query: 1   MRQGPWLFDKFLLVLSKPIPMVKPTTMEFKFATFWVHFCELPMDLYHWSMAERLGNAIGQ 60
           +  GPW FDK LL+L +  P V+P+ ++  +  FWVH C LP+ L +  + + +GNA+GQ
Sbjct: 93  LSNGPWTFDKHLLMLGEMDPNVQPSDIQLTWVQFWVHVCNLPLILMNKKVGQIVGNAVGQ 152

Query: 61  FQEYDNGGRGYGWKESLRVRVTIDITHPPHHGIKVRLDEPLGSVWTPIKYDKLPEICASC 120
           F + D    G  W  ++ +RV +D+  P   G+K+ L   +  +W   KY++LP  C  C
Sbjct: 153 FIDMDYEDGGIAWGRTMLIRVALDVRKPLRRGMKLALSS-VEPIWVDFKYERLPIYCYFC 212

Query: 121 GRIGHGTKDCSS 133
           GR+GH  ++C +
Sbjct: 213 GRLGHSDRECDA 223

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU552.9e-3347.18uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1BSZ11.4e-3041.84uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DX301.1e-2442.50uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803QFF22.2e-2037.14Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1D7652.9e-2037.40uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
Match NameE-valueIdentityDescription
XP_022156185.16.1e-3347.18uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.12.8e-3041.84uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.12.3e-2442.50uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_028124075.14.4e-2338.46uncharacterized protein LOC114321128 [Camellia sinensis][more]
XP_028071384.11.3e-2236.36uncharacterized protein LOC114273772 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 1..81
e-value: 2.4E-14
score: 53.1
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 83..131
e-value: 9.4E-9
score: 34.8
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 3..134
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 3..134
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 117..130
score: 8.861545

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g008780.1Lcy08g008780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding